Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cpa.g.sc11.141 Carica papaya HOM05D003907 ORTHO05D004819 1.3e-205 719.5 380 100.0
GSVIVG01033959001 Vitis vinifera HOM05D003907 ORTHO05D004819 1.0e-189 666.8 375 91.2
Lj3g0026649 Lotus japonicus HOM05D003907 ORTHO05D004819 4.2e-188 661.4 375 90.7
Potri.006G100200 Populus trichocarpa HOM05D003907 ORTHO05D004819 5.5e-188 661.0 375 91.2
Glyma.18G200800 Glycine max HOM05D003907 ORTHO05D004819 7.2e-188 660.6 375 91.2
Manes.09G104800 Manihot esculenta HOM05D003907 ORTHO05D004819 1.2e-187 659.8 375 89.1
TWI53G0466 Tripterygium wilfordii HOM05D003907 ORTHO05D004819 1.2e-187 659.8 375 90.4
Glyma.07G149900 Glycine max HOM05D003907 ORTHO05D004819 4.7e-187 657.9 375 90.7
COL.COLO4_14536 Corchorus olitorius HOM05D003907 ORTHO05D004819 6.1e-187 657.5 375 90.1
Duzib106G0096 Durio zibethinus HOM05D003907 ORTHO05D004819 6.1e-187 657.5 376 90.2
THA.LOC104823300 Tarenaya hassleriana HOM05D003907 ORTHO05D004819 6.1e-187 657.5 375 90.7
Thecc.05G016000 Theobroma cacao HOM05D003907 ORTHO05D004819 1.4e-186 656.4 376 91.8
Dinv23105 Davidia involucrata HOM05D003907 ORTHO05D004819 4.0e-186 654.8 375 89.6
TWI74G1106 Tripterygium wilfordii HOM05D003907 ORTHO05D004819 5.2e-186 654.4 375 89.6
Manes.09G105700 Manihot esculenta HOM05D003907 ORTHO05D004819 6.8e-186 654.1 375 88.3
Prupe.6G277300 Prunus persica HOM05D003907 ORTHO05D004819 8.9e-186 653.7 375 89.3
Gohir.D09G160800 Gossypium hirsutum HOM05D003907 ORTHO05D004819 2.0e-185 652.5 376 89.9
Potri.016G116200 Populus trichocarpa HOM05D003907 ORTHO05D004819 2.0e-185 652.5 375 89.6
Gohir.A09G165200 Gossypium hirsutum HOM05D003907 ORTHO05D004819 2.6e-185 652.1 376 89.6
Ciclev10011517m.g Citrus clementina HOM05D003907 ORTHO05D004819 3.4e-185 651.7 376 89.6
Gorai.006G182500 Gossypium raimondii HOM05D003907 ORTHO05D004819 5.7e-185 651.0 376 89.6
ClCG04G006990 Citrullus lanatus HOM05D003907 ORTHO05D004819 9.8e-185 650.2 375 88.5
CANSAT35G0110 Cannabis sativa HOM05D003907 ORTHO05D004819 1.7e-184 649.4 375 89.9
CiPaw.09G209200 Carya illinoinensis HOM05D003907 ORTHO05D004819 1.7e-184 649.4 375 89.6
MSTRG.26811 Avicennia marina HOM05D003907 ORTHO05D004819 2.8e-184 648.7 375 88.5
Haze_21003 Corylus avellana HOM05D003907 ORTHO05D004819 3.7e-184 648.3 375 89.3
Psat3g128200 Pisum sativum HOM05D003907 ORTHO05D004819 3.7e-184 648.3 375 88.5
CsaV3_4G026280 Cucumis sativus L. HOM05D003907 ORTHO05D004819 4.9e-184 647.9 375 88.0
MSTRG.10218 Avicennia marina HOM05D003907 ORTHO05D004819 1.1e-183 646.7 375 88.0
Sabra16G0111700 Salix brachista HOM05D003907 ORTHO05D004819 1.1e-183 646.7 375 89.1
Sp6g40750 Schrenkiella parvula HOM05D003907 ORTHO05D004819 1.4e-183 646.4 375 88.5
Actinidia05367 Actinidia chinensis HOM05D003907 ORTHO05D004819 1.8e-183 646.0 377 88.3
Cfa017208 Carpinus fangiana HOM05D003907 ORTHO05D004819 1.8e-183 646.0 375 89.3
TAR636G2600 Trochodendron aralioides HOM05D003907 ORTHO05D004819 3.1e-183 645.2 375 87.2
Medtr7g068440 Medicago truncatula HOM05D003907 ORTHO05D004819 5.4e-183 644.4 375 87.7
Carub.0006s0037 Capsella rubella HOM05D003907 ORTHO05D004819 7.0e-183 644.0 375 87.7
Cc06_g01360 Coffea canephora HOM05D003907 ORTHO05D004819 7.0e-183 644.0 375 87.7
Thhalv10013023m.g Eutrema salsugineum HOM05D003907 ORTHO05D004819 7.0e-183 644.0 375 88.3
AT3G08930 Arabidopsis thaliana HOM05D003907 ORTHO05D004819 9.2e-183 643.7 375 87.2
TAR633G0126 Trochodendron aralioides HOM05D003907 ORTHO05D004819 9.2e-183 643.7 375 87.5
TPR.G13353 Trifolium pratense HOM05D003907 ORTHO05D004819 1.2e-182 643.3 376 88.0
Sed0026155 Sechium edule HOM05D003907 ORTHO05D004819 2.0e-182 642.5 375 87.7
Carub.0003s0804 Capsella rubella HOM05D003907 ORTHO05D004819 2.7e-182 642.1 375 87.5
CARHR211830 Cardamine hirsuta HOM05D003907 ORTHO05D004819 2.7e-182 642.1 375 87.7
AL3G19930 Arabidopsis lyrata HOM05D003907 ORTHO05D004819 3.5e-182 641.7 375 87.2
QL07p019755 Quercus lobata HOM05D003907 ORTHO05D004819 3.5e-182 641.7 375 88.0
Sed0027660 Sechium edule HOM05D003907 ORTHO05D004819 3.5e-182 641.7 375 86.9
SGA_v2.0_scaffold240G44095 Striga asiatica HOM05D003907 ORTHO05D004819 3.5e-182 641.7 375 86.9
Lsat_1_v5_gn_9_34621 Lactuca sativa HOM05D003907 ORTHO05D004819 4.5e-182 641.3 375 86.1
Lj2A75G35 Lonicera japonica HOM05D003907 ORTHO05D004819 4.5e-182 641.3 375 86.9
MD12G1166000 Malus domestica HOM05D003907 ORTHO05D004819 4.5e-182 641.3 375 88.0
Atru.chr8.2242 Acer truncatum HOM05D003907 ORTHO05D004819 5.9e-182 641.0 376 88.0
AT5G01460 Arabidopsis thaliana HOM05D003907 ORTHO05D004819 7.8e-182 640.6 375 87.7
arahy.Tifrunner.gnm1.ann1.NAY5W3 Arachis hypogaea HOM05D003907 ORTHO05D004819 1.0e-181 640.2 375 87.7
arahy.Tifrunner.gnm1.ann1.S2G015 Arachis hypogaea HOM05D003907 ORTHO05D004819 1.0e-181 640.2 375 87.7
Rhsim03G0144200 Rhododendron simsii HOM05D003907 ORTHO05D004819 1.7e-181 639.4 386 86.0
Eucgr.B02811 Eucalyptus grandis HOM05D003907 ORTHO05D004819 2.3e-181 639.0 375 88.3
Nn2g11497 Nelumbo nucifera HOM05D003907 ORTHO05D004819 2.3e-181 639.0 375 86.7
Sp3g07320 Schrenkiella parvula HOM05D003907 ORTHO05D004819 2.3e-181 639.0 375 86.9
MD04G1152700 Malus domestica HOM05D003907 ORTHO05D004819 3.8e-181 638.3 375 87.5
AL6G10610 Arabidopsis lyrata HOM05D003907 ORTHO05D004819 5.0e-181 637.9 375 86.9
CARHR083260 Cardamine hirsuta HOM05D003907 ORTHO05D004819 5.0e-181 637.9 375 87.2
Thhalv10020541m.g Eutrema salsugineum HOM05D003907 ORTHO05D004819 5.0e-181 637.9 375 86.7
CSS0040367 Camellia sinensis var. sinensis HOM05D003907 ORTHO05D004819 6.6e-181 637.5 376 87.8
HanXRQChr10g0299881 Helianthus annuus HOM05D003907 ORTHO05D004819 1.9e-180 636.0 375 86.1
CAN.G5.12 Capsicum annuum HOM05D003907 ORTHO05D004819 5.6e-180 634.4 375 85.9
Oeu041306.1 Olea europaea HOM05D003907 ORTHO05D004819 5.6e-180 634.4 375 85.9
SGA_v2.0_scaffold110G31215 Striga asiatica HOM05D003907 ORTHO05D004819 7.3e-180 634.0 375 85.6
Glyma.03G058100 Glycine max HOM05D003907 ORTHO05D004819 1.2e-179 633.3 375 88.5
Aqoxy4G02574 Aquilegia oxysepala HOM05D003907 ORTHO05D004819 2.1e-179 632.5 376 85.4
Migut.L02013 Erythranthe guttata HOM05D003907 ORTHO05D004819 2.1e-179 632.5 375 84.5
Glyma.01G122100 Glycine max HOM05D003907 ORTHO05D004819 2.1e-179 632.5 375 88.3
CSS0038026 Camellia sinensis var. sinensis HOM05D003907 ORTHO05D004819 2.8e-179 632.1 375 85.3
BolC5t34549H Brassica oleracea HOM05D003907 ORTHO05D004819 3.6e-179 631.7 375 86.7
Aa31LG1G23090 Aethionema arabicum HOM05D003907 ORTHO05D004819 4.7e-179 631.3 375 86.1
C05p58960 Brassica napus HOM05D003907 ORTHO05D004819 4.7e-179 631.3 375 86.7
Ca_20232_v3 Cicer arietinum L. HOM05D003907 ORTHO05D004819 6.1e-179 630.9 375 85.9
A05p39920 Brassica napus HOM05D003907 ORTHO05D004819 1.0e-178 630.2 375 86.4
BraSC256t45932Z Brassica rapa HOM05D003907 ORTHO05D004819 1.0e-178 630.2 375 86.4
Nitab4.5_0000335g0010 Nicotiana tabacum HOM05D003907 ORTHO05D004819 1.0e-178 630.2 375 86.4
Nitab4.5_0000511g0010 Nicotiana tabacum HOM05D003907 ORTHO05D004819 1.0e-178 630.2 375 86.7
BcaB04g18559 Brassica carinata HOM05D003907 ORTHO05D004819 1.4e-178 629.8 375 86.1
Lj3g0019592 Lotus japonicus HOM05D003907 ORTHO05D004819 4.0e-178 628.2 375 86.4
VMungo0331G1185 Vigna mungo HOM05D003907 ORTHO05D004819 7.5e-177 624.0 375 87.5
vmacro11169 Vaccinium macrocarpon HOM05D003907 ORTHO05D004819 9.8e-177 623.6 414 79.2
PGSC0003DMG400023084 Solanum tuberosum HOM05D003907 ORTHO05D004819 1.3e-176 623.2 375 83.7
Ca_07641_v3 Cicer arietinum L. HOM05D003907 ORTHO05D004819 1.7e-176 622.9 427 78.2
Ca_30080_v3 Cicer arietinum L. HOM05D003907 ORTHO05D004819 1.7e-176 622.9 427 78.2
Sopen09g001280 Solanum pennellii HOM05D003907 ORTHO05D004819 2.9e-176 622.1 375 83.5
Solyc09g005310.3 Solanum lycopersicum HOM05D003907 ORTHO05D004819 3.7e-176 621.7 375 83.5
CiPaw.10G156600 Carya illinoinensis HOM05D003907 ORTHO05D004819 1.1e-175 620.2 375 85.1
Migut.J00170 Erythranthe guttata HOM05D003907 ORTHO05D004819 1.1e-175 620.2 375 84.3
Phvul.008G104400 Phaseolus vulgaris HOM05D003907 ORTHO05D004819 1.1e-175 620.2 375 84.8
PGR004G0735 Punica granatum HOM05D003907 ORTHO05D004819 2.4e-175 619.0 375 85.3
RcHm_v2.0_Chr3g0463141 Rosa chinensis HOM05D003907 ORTHO05D004819 2.4e-175 619.0 375 84.5
Sabra06G0077000 Salix brachista HOM05D003907 ORTHO05D004819 7.0e-175 617.5 437 77.1
Hund14296 Selenicereus undatus HOM05D003907 ORTHO05D004819 1.2e-174 616.7 376 84.8
Ah.12g058610 Amaranthus hybridus HOM05D003907 ORTHO05D004819 1.6e-174 616.3 375 84.0
FAN09G4250 Fragaria x ananassa HOM05D003907 ORTHO05D004819 2.7e-174 615.5 375 84.5
unitig_8.g3229 Utricularia gibba HOM05D003907 ORTHO05D004819 4.6e-174 614.8 375 83.7
FvH4_6g11450 Fragaria vesca HOM05D003907 ORTHO05D004819 1.0e-173 613.6 375 84.0
FAN14G1433 Fragaria x ananassa HOM05D003907 ORTHO05D004819 1.0e-173 613.6 375 84.0
FAN14G5854 Fragaria x ananassa HOM05D003907 ORTHO05D004819 1.0e-173 613.6 375 84.0
Aqoxy2G00900 Aquilegia oxysepala HOM05D003907 ORTHO05D004819 1.3e-173 613.2 376 83.8
FAN05G4390 Fragaria x ananassa HOM05D003907 ORTHO05D004819 5.0e-173 611.3 375 83.7
FAN02G2014 Fragaria x ananassa HOM05D003907 ORTHO05D004819 8.6e-173 610.5 375 84.0
DCAR_018702 Daucus carota HOM05D003907 ORTHO05D004819 1.1e-172 610.1 376 82.2
Lalb_Chr03g0043281 Lupinus albus HOM05D003907 ORTHO05D004819 1.5e-172 609.8 377 84.9
SalBow5G2920 Salvia bowleyana HOM05D003907 ORTHO05D004819 1.9e-172 609.4 375 81.6
Lalb_Chr01g0023081 Lupinus albus HOM05D003907 ORTHO05D004819 5.6e-172 607.8 377 85.1
EL10Ac5g12561 Beta vulgaris HOM05D003907 ORTHO05D004819 1.6e-171 606.3 375 81.3
A03p36270 Brassica napus HOM05D003907 ORTHO05D004819 3.6e-171 605.1 375 83.5
C03p43910 Brassica napus HOM05D003907 ORTHO05D004819 3.6e-171 605.1 375 83.5
BraA03t12798Z Brassica rapa HOM05D003907 ORTHO05D004819 3.6e-171 605.1 375 83.5
ATR0618G011 Amborella trichopoda HOM05D003907 ORTHO05D004819 4.7e-171 604.7 376 82.7
BolC3t16659H Brassica oleracea HOM05D003907 ORTHO05D004819 4.7e-171 604.7 375 83.2
PSO801G0155 Papaver somniferum HOM05D003907 ORTHO05D004819 6.2e-171 604.4 376 84.0
PSO339G6136 Papaver somniferum HOM05D003907 ORTHO05D004819 8.0e-171 604.0 376 84.0
Lj3A953T53 Lonicera japonica HOM05D003907 ORTHO05D004819 1.4e-170 603.2 389 80.2
AUR62010458 Chenopodium quinoa HOM05D003907 ORTHO05D004819 5.2e-170 601.3 376 80.9
ECA247G1720 Erigeron canadensis HOM05D003907 ORTHO05D004819 4.9e-168 594.7 347 85.3
Duzib093G1828 Durio zibethinus HOM05D003907 ORTHO05D004819 1.3e-165 586.6 339 90.0
Duzib128G0387 Durio zibethinus HOM05D003907 ORTHO05D004819 6.6e-165 584.3 339 89.7
MELO3C003291.2 Cucumis melo HOM05D003907 ORTHO05D004819 9.5e-164 580.5 343 87.8
CDE05G1648 Ceratophyllum demersum HOM05D003907 ORTHO05D004819 2.3e-162 575.9 376 77.9
Zm00001eb269470 Zea mays HOM05D003907 ORTHO05D004819 5.8e-161 571.2 376 77.7
CDE05G1838 Ceratophyllum demersum HOM05D003907 ORTHO05D004819 9.2e-159 563.9 376 76.6
Oeu064499.2 Olea europaea HOM05D003907 ORTHO05D004819 1.7e-157 559.7 412 72.8
BcaC05g29627 Brassica carinata HOM05D003907 ORTHO05D004819 6.6e-157 557.8 321 88.2
Zm00001eb378570 Zea mays HOM05D003907 ORTHO05D004819 1.6e-155 553.1 376 76.1
AUR62030453 Chenopodium quinoa HOM05D003907 ORTHO05D004819 3.6e-155 552.0 377 75.9
Lalb_Chr19g0124541 Lupinus albus HOM05D003907 ORTHO05D004819 1.4e-154 550.1 377 78.8
Phvul.010G001200 Phaseolus vulgaris HOM05D003907 ORTHO05D004819 6.8e-154 547.7 375 78.4
Peaxi162Scf00141g01026 Petunia axillaris HOM05D003907 ORTHO05D004819 2.7e-150 535.8 375 75.7
DCAR_015417 Daucus carota HOM05D003907 ORTHO05D004819 4.8e-139 498.4 339 75.5
Mapoly0058s0053 Marchantia polymorpha HOM05D003907 ORTHO05D004819 2.6e-137 492.7 382 63.1
SMO367G0485 Selaginella moellendorffii HOM05D003907 ORTHO05D004819 3.2e-135 485.7 378 66.9
AagrBONN_evm.TU.Sc2ySwM_368.1024 Anthoceros agrestis HOM05D003907 ORTHO05D004819 6.2e-131 471.5 381 62.2
Pp3c13_15020 Physcomitrium patens HOM05D003907 ORTHO05D004819 5.8e-129 464.9 382 60.2
Actinidia20733 Actinidia chinensis HOM05D003907 ORTHO05D004819 2.1e-126 456.4 375 66.4
Actinidia29101 Actinidia chinensis HOM05D003907 ORTHO05D004819 3.7e-123 445.7 254 88.6
SMO146G0061 Selaginella moellendorffii HOM05D003907 ORTHO05D004819 4.6e-118 428.7 380 58.4
CBR_g40208 Chara braunii HOM05D003907 ORTHO05D004819 8.7e-117 424.5 387 57.4
CBR_g53729 Chara braunii HOM05D003907 ORTHO05D004819 7.4e-116 421.4 386 56.7
HPP92_003698 Vanilla planifolia HOM05D003907 ORTHO05D004819 1.0e-112 411.0 260 81.9
unitig_22.g6592 Utricularia gibba HOM05D003907 ORTHO05D004819 2.9e-112 409.5 333 66.1
Pp3c23_4110 Physcomitrium patens HOM05D003907 ORTHO05D004819 1.3e-107 394.0 374 52.9
SEGI_00285 Sequoiadendron giganteum HOM05D003907 ORTHO05D004819 1.3e-104 384.0 267 75.7
Sc01g0006450 Simmondsia chinensis HOM05D003907 ORTHO05D004819 3.0e-101 372.9 230 84.8
TPR.G7076 Trifolium pratense HOM05D003907 ORTHO05D004819 2.8e-99 366.3 229 83.4
Actinidia11586 Actinidia chinensis HOM05D003907 ORTHO05D004819 3.7e-99 365.9 317 64.7
Ah.02g115900 Amaranthus hybridus HOM05D003907 ORTHO05D004819 7.0e-98 361.7 229 82.1
SMO015G0001 Selaginella moellendorffii HOM05D003907 ORTHO05D004819 1.8e-90 337.0 348 54.6
Hma1.2p1_0362F.1_g136250 Hydrangea macrophylla HOM05D003907 ORTHO05D004819 6.7e-85 318.5 191 87.4
PRCOL_00002088 Prasinoderma coloniale HOM05D003907 ORTHO05D004819 8.2e-83 311.6 395 45.1
CSS0040994 Camellia sinensis var. sinensis HOM05D003907 ORTHO05D004819 2.0e-81 307.0 199 83.4
MCO03G500 Micromonas commoda HOM05D003907 ORTHO05D004819 9.4e-79 298.1 372 44.9
Glyma.16G099300 Glycine max HOM05D003907 ORTHO05D004819 4.0e-77 292.7 172 90.7
Actinidia27153 Actinidia chinensis HOM05D003907 ORTHO05D004819 2.6e-68 263.5 149 91.3
Cre01.g023400 Chlamydomonas reinhardtii HOM05D003907 ORTHO05D004819 2.4e-66 256.9 383 38.1
TPR.G8133 Trifolium pratense HOM05D003907 ORTHO05D038338 2.3e-61 240.4 145 83.4
SMO173G0027 Selaginella moellendorffii HOM05D003907 ORTHO05D004819 7.3e-55 218.8 302 45.7
ATR0759G042 Amborella trichopoda HOM05D003907 ORTHO05D038338 1.1e-47 194.9 117 78.6
SMO023G0001 Selaginella moellendorffii HOM05D003907 ORTHO05D376622 4.4e-44 183.0 323 40.6
SMO173G0021 Selaginella moellendorffii HOM05D003907 ORTHO05D004819 2.9e-43 180.3 251 43.8
ATR0759G047 Amborella trichopoda HOM05D003907 ORTHO05D004819 3.7e-43 179.9 149 68.5
Actinidia29102 Actinidia chinensis HOM05D003907 ORTHO05D004819 3.9e-40 169.9 110 80.0
Ca_20230_v3 Cicer arietinum L. HOM05D003907 ORTHO05D148210 2.9e-35 153.7 106 74.5
SMO173G0002 Selaginella moellendorffii HOM05D003907 ORTHO05D004819 1.2e-33 148.3 159 52.8
SMO146G0194 Selaginella moellendorffii HOM05D003907 ORTHO05D004819 2.2e-27 127.5 153 50.3
VMungo1080G1595 Vigna mungo HOM05D003907 ORTHO05D004819 1.5e-23 114.8 156 49.4
SMO146G0334 Selaginella moellendorffii HOM05D003907 ORTHO05D004819 5.3e-21 106.3 81 61.7
SMO173G0093 Selaginella moellendorffii HOM05D003907 ORTHO05D378519 3.8e-11 73.6 63 58.7
SEGI_07345 Sequoiadendron giganteum HOM05D003907 ORTHO05D004819 4.6e-09 66.6 45 66.7
PSO541G6111 Papaver somniferum HOM05D003907 ORTHO05D305003 2.8e-06 57.4 38 76.3


User provided reference genes

Program Settings