Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cpa.g.sc11.14 Carica papaya HOM05D010740 ORTHO05D010953 2.3e-133 478.8 223 100.0
Cpa.g.sc1.70 Carica papaya HOM05D010740 ORTHO05D010953 1.1e-23 114.4 113 46.0
Cpa.g.sc18.124 Carica papaya HOM05D010740 ORTHO05D010953 7.6e-20 101.7 97 47.4
Cpa.g.sc0.199 Carica papaya HOM05D010740 ORTHO05D000022 1.5e-15 87.4 69 56.5
Cpa.g.sc203.8 Carica papaya HOM05D011316 ORTHO05D010953 4.3e-15 85.9 127 35.4
Thecc.06G025800 Theobroma cacao HOM05D000003 ORTHO05D000022 9.6e-15 84.7 90 41.1
Cpa.g.sc0.187 Carica papaya HOM05D010740 ORTHO05D010953 1.6e-14 84.0 65 58.5
Cpa.g.c34877 Carica papaya HOM05D011316 ORTHO05D010953 2.1e-14 83.6 140 33.6
Cpa.g.sc12.71 Carica papaya HOM05D010740 ORTHO05D010953 3.7e-14 82.8 89 44.9
Thecc.06G023800 Theobroma cacao HOM05D000003 ORTHO05D000006 8.1e-14 81.6 90 38.9
Cpa.g.sc190.22 Carica papaya HOM05D010740 ORTHO05D010953 3.1e-13 79.7 89 40.4
TWI38G0333 Tripterygium wilfordii HOM05D000003 ORTHO05D000004 5.3e-13 79.0 104 33.7
SGA_v2.0_scaffold147G36377 Striga asiatica HOM05D000003 ORTHO05D000022 1.2e-12 77.8 71 45.1
Atru.chr5.2276 Acer truncatum HOM05D000003 ORTHO05D000004 3.4e-12 76.3 180 27.2
Cpa.g.c38141 Carica papaya HOM05D010740 ORTHO05D010953 6.5e-11 72.0 59 49.2
PGR031G0166 Punica granatum HOM05D000155 ORTHO05D000022 1.4e-10 70.9 83 38.6
Atru.chr10.857 Acer truncatum HOM05D000003 ORTHO05D000004 1.9e-10 70.5 82 36.6
Cpa.g.sc51.27 Carica papaya HOM05D016823 ORTHO05D043531 1.9e-10 70.5 49 61.2
Cpa.g.sc161.21 Carica papaya HOM05D011316 ORTHO05D010953 2.5e-10 70.1 68 44.1
TWI81G0242 Tripterygium wilfordii HOM05D000003 ORTHO05D000004 2.5e-10 70.1 77 37.7
Cpa.g.sc280.8 Carica papaya HOM05D011316 ORTHO05D010953 3.2e-10 69.7 84 34.5
TWI63G0844 Tripterygium wilfordii HOM05D000013 ORTHO05D000011 3.2e-10 69.7 66 48.5
Manes.07G103102 Manihot esculenta HOM05D000003 ORTHO05D000004 4.2e-10 69.3 77 35.1
Prupe.1G291700 Prunus persica HOM05D000061 ORTHO05D000050 4.2e-10 69.3 168 27.4
Cpa.g.sc15.128 Carica papaya HOM05D021171 ORTHO05D017373 5.5e-10 68.9 138 29.7
PGR119G2417 Punica granatum HOM05D000003 ORTHO05D000004 5.5e-10 68.9 85 36.5
Atru.chr8.1687 Acer truncatum HOM05D000003 ORTHO05D000022 7.1e-10 68.6 82 32.9
Cpa.g.sc42.33 Carica papaya HOM05D013899 ORTHO05D017373 2.1e-09 67.0 90 35.6
Atru.chr11.757 Acer truncatum HOM05D000003 ORTHO05D000004 2.7e-09 66.6 103 30.1
Atru.chr12.1989 Acer truncatum HOM05D000003 ORTHO05D000022 2.7e-09 66.6 77 36.4
Prupe.4G223300 Prunus persica HOM05D000279 ORTHO05D000022 2.7e-09 66.6 77 35.1
Atru.chr1.956 Acer truncatum HOM05D000003 ORTHO05D000006 4.6e-09 65.9 229 22.7
FvH4_3g33091 Fragaria vesca HOM05D000003 ORTHO05D000022 6.0e-09 65.5 73 32.9
Atru.chr10.897 Acer truncatum HOM05D000003 ORTHO05D000004 7.9e-09 65.1 77 39.0
Atru.chr8.1057 Acer truncatum HOM05D000003 ORTHO05D000022 7.9e-09 65.1 82 31.7
CARHR121910 Cardamine hirsuta HOM05D000155 ORTHO05D000022 7.9e-09 65.1 90 32.2
Atru.chr4.136 Acer truncatum HOM05D000003 ORTHO05D000022 1.0e-08 64.7 78 38.5
Atru.chr7.668 Acer truncatum HOM05D000003 ORTHO05D000004 1.0e-08 64.7 82 32.9
Cpa.g.sc81.77 Carica papaya HOM05D015157 ORTHO05D011148 1.0e-08 64.7 68 45.6
Atru.chr7.622 Acer truncatum HOM05D000003 ORTHO05D000004 1.3e-08 64.3 72 38.9
Atru.chr6.1170 Acer truncatum HOM05D000003 ORTHO05D000022 1.8e-08 63.9 77 36.4
Atru.chr2.53 Acer truncatum HOM05D000003 ORTHO05D000022 2.3e-08 63.5 77 37.7
COL.COLO4_27635 Corchorus olitorius HOM05D000003 ORTHO05D000022 2.3e-08 63.5 76 35.5
COL.COLO4_36152 Corchorus olitorius HOM05D000003 ORTHO05D000022 2.3e-08 63.5 74 39.2
FvH4_2g15861 Fragaria vesca HOM05D000003 ORTHO05D000022 2.3e-08 63.5 73 32.9
Atru.chr7.259 Acer truncatum HOM05D000003 ORTHO05D000022 3.0e-08 63.2 108 31.5
Psat5g143280 Pisum sativum HOM05D000003 ORTHO05D011085 3.0e-08 63.2 92 33.7
Atru.chr2.3435 Acer truncatum HOM05D000003 ORTHO05D000022 3.9e-08 62.8 78 35.9
Atru.chr4.29 Acer truncatum HOM05D000003 ORTHO05D000022 3.9e-08 62.8 82 36.6
Lj4g0025065 Lotus japonicus HOM05D000155 ORTHO05D000022 3.9e-08 62.8 81 33.3
QL03p058466 Quercus lobata HOM05D000003 ORTHO05D000022 3.9e-08 62.8 77 36.4
Atru.chr1.2428 Acer truncatum HOM05D000003 ORTHO05D000004 5.1e-08 62.4 77 36.4
Atru.chr2.669 Acer truncatum HOM05D000003 ORTHO05D000004 5.1e-08 62.4 77 35.1
Atru.chr4.1844 Acer truncatum HOM05D000003 ORTHO05D000022 5.1e-08 62.4 77 33.8
Cpa.g.sc4.196 Carica papaya HOM05D013899 ORTHO05D010953 5.1e-08 62.4 193 27.5
Solyc06g082170.2 Solanum lycopersicum HOM05D000314 ORTHO05D000189 5.1e-08 62.4 83 41.0
Atru.chr11.82 Acer truncatum HOM05D000003 ORTHO05D000022 6.7e-08 62.0 82 31.7
Atru.chr2.2394 Acer truncatum HOM05D000003 ORTHO05D000022 6.7e-08 62.0 76 34.2
COL.COLO4_10353 Corchorus olitorius HOM05D000003 ORTHO05D000006 6.7e-08 62.0 150 26.0
Prupe.7G199700 Prunus persica HOM05D000003 ORTHO05D000022 6.7e-08 62.0 104 27.9
Psat7g059240 Pisum sativum HOM05D000003 ORTHO05D000022 8.7e-08 61.6 79 36.7
Atru.chr10.557 Acer truncatum HOM05D000003 ORTHO05D000022 1.1e-07 61.2 77 32.5
CARHR035340 Cardamine hirsuta HOM05D000003 ORTHO05D000022 1.1e-07 61.2 82 34.1
Lj4g0002379 Lotus japonicus HOM05D000003 ORTHO05D000022 1.1e-07 61.2 67 35.8
Atru.chr1.1701 Acer truncatum HOM05D000003 ORTHO05D000022 1.5e-07 60.8 82 32.9
Atru.chr3.2393 Acer truncatum HOM05D000003 ORTHO05D000022 1.5e-07 60.8 84 34.5
Lj3g0015119 Lotus japonicus HOM05D000003 ORTHO05D000022 1.5e-07 60.8 79 34.2
Nitab4.5_0007388g0080 Nicotiana tabacum HOM05D000003 ORTHO05D000022 1.5e-07 60.8 79 39.2
Peaxi162Scf00129g00613 Petunia axillaris HOM05D000003 ORTHO05D026350 1.5e-07 60.8 87 37.9
Atru.chr4.1146 Acer truncatum HOM05D000003 ORTHO05D000022 1.9e-07 60.5 77 33.8
COL.COLO4_12315 Corchorus olitorius HOM05D000003 ORTHO05D000022 1.9e-07 60.5 81 33.3
SHI41809 Sapria himalayana HOM05D000003 ORTHO05D000004 1.9e-07 60.5 146 23.3
Atru.chr10.890 Acer truncatum HOM05D000003 ORTHO05D000022 2.5e-07 60.1 218 23.4
Sopen10g006600 Solanum pennellii HOM05D000003 ORTHO05D001349 2.5e-07 60.1 79 41.8
Psat3g207120 Pisum sativum HOM05D000003 ORTHO05D000022 3.3e-07 59.7 80 37.5
Sabra04G0049100 Salix brachista HOM05D000003 ORTHO05D000007 3.3e-07 59.7 75 34.7
Sabra08G0134900 Salix brachista HOM05D000003 ORTHO05D000006 3.3e-07 59.7 75 34.7
Sabra09G0015300 Salix brachista HOM05D000003 ORTHO05D000006 3.3e-07 59.7 75 34.7
THA.LOC104801226 Tarenaya hassleriana HOM05D007909 ORTHO05D000743 3.3e-07 59.7 77 32.5
Atru.chr10.713 Acer truncatum HOM05D000003 ORTHO05D000022 4.3e-07 59.3 76 31.6
Ciclev10021474m.g Citrus clementina HOM05D000003 ORTHO05D000022 4.3e-07 59.3 77 31.2
Prupe.6G118100 Prunus persica HOM05D000003 ORTHO05D000022 4.3e-07 59.3 75 32.0
Prupe.6G201000 Prunus persica HOM05D000003 ORTHO05D000022 4.3e-07 59.3 75 32.0
RcHm_v2.0_Chr7g0181271 Rosa chinensis HOM05D000003 ORTHO05D000022 4.3e-07 59.3 69 31.9
Atru.chr13.1101 Acer truncatum HOM05D000003 ORTHO05D000022 5.7e-07 58.9 77 33.8
CSS0029354 Camellia sinensis var. sinensis HOM05D000003 ORTHO05D000004 5.7e-07 58.9 112 25.9
Atru.chr11.1243 Acer truncatum HOM05D000003 ORTHO05D000022 7.4e-07 58.5 107 29.9
Atru.chr12.663 Acer truncatum HOM05D000003 ORTHO05D000022 7.4e-07 58.5 78 28.2
Atru.chr7.120 Acer truncatum HOM05D000003 ORTHO05D000004 7.4e-07 58.5 78 33.3
Atru.chr9.1441 Acer truncatum HOM05D000003 ORTHO05D000022 7.4e-07 58.5 78 28.2
CSS0032736 Camellia sinensis var. sinensis HOM05D000003 ORTHO05D000022 7.4e-07 58.5 179 22.9
Peaxi162Scf00015g00940 Petunia axillaris HOM05D000145 ORTHO05D000115 7.4e-07 58.5 87 35.6
Cpa.g.sc117.20 Carica papaya HOM05D010740 ORTHO05D010953 9.6e-07 58.2 62 41.9
Nitab4.5_0007388g0070 Nicotiana tabacum HOM05D000003 ORTHO05D000022 9.6e-07 58.2 79 38.0
QL10p064615 Quercus lobata HOM05D000155 ORTHO05D000022 9.6e-07 58.2 75 36.0
RcHm_v2.0_Chr5g0041361 Rosa chinensis HOM05D000279 ORTHO05D000022 9.6e-07 58.2 76 36.8
Atru.chr11.1190 Acer truncatum HOM05D000003 ORTHO05D000022 1.3e-06 57.8 77 32.5
Atru.chr10.629 Acer truncatum HOM05D000003 ORTHO05D000004 1.6e-06 57.4 77 32.5
Atru.chr2.2708 Acer truncatum HOM05D000003 ORTHO05D000022 1.6e-06 57.4 77 28.6
SGA_v2.0_scaffold245G44469 Striga asiatica HOM05D000003 ORTHO05D000022 1.6e-06 57.4 92 33.7
Atru.chr1.1905 Acer truncatum HOM05D000003 ORTHO05D000022 2.1e-06 57.0 76 32.9
Lj6g0023576 Lotus japonicus HOM05D000003 ORTHO05D000022 2.1e-06 57.0 75 33.3
Psat2g039320 Pisum sativum HOM05D000024 ORTHO05D000006 2.1e-06 57.0 109 30.3
Psat7g156400 Pisum sativum HOM05D000003 ORTHO05D017882 2.1e-06 57.0 83 36.1
RcHm_v2.0_Chr6g0291741 Rosa chinensis HOM05D000003 ORTHO05D000004 2.1e-06 57.0 255 22.7
Atru.chr1.776 Acer truncatum HOM05D000003 ORTHO05D000004 2.8e-06 56.6 77 32.5
Atru.chr2.284 Acer truncatum HOM05D000003 ORTHO05D000022 2.8e-06 56.6 77 29.9
CARHR145030 Cardamine hirsuta HOM05D000003 ORTHO05D000022 2.8e-06 56.6 73 37.0
Actinidia35690 Actinidia chinensis HOM05D000003 ORTHO05D000022 3.7e-06 56.2 80 30.0
CSS0009143 Camellia sinensis var. sinensis HOM05D000155 ORTHO05D000022 3.7e-06 56.2 75 37.3
Prupe.4G161900 Prunus persica HOM05D000003 ORTHO05D000022 3.7e-06 56.2 68 33.8
THA.LOC104804652 Tarenaya hassleriana HOM05D000003 ORTHO05D000022 3.7e-06 56.2 71 39.4
Atru.chr10.394 Acer truncatum HOM05D000003 ORTHO05D000022 4.8e-06 55.8 76 34.2
Atru.chr3.2067 Acer truncatum HOM05D000003 ORTHO05D000022 4.8e-06 55.8 90 32.2
Atru.chr7.713 Acer truncatum HOM05D000003 ORTHO05D000004 4.8e-06 55.8 77 32.5
Psat0s2485g0320 Pisum sativum HOM05D000224 ORTHO05D000337 4.8e-06 55.8 58 41.4
RcHm_v2.0_Chr2g0146161 Rosa chinensis HOM05D000003 ORTHO05D000022 4.8e-06 55.8 145 25.5
Atru.chr2.971 Acer truncatum HOM05D000003 ORTHO05D000022 6.3e-06 55.5 164 25.6
Cpa.g.sc15.25 Carica papaya HOM05D000003 ORTHO05D000004 6.3e-06 55.5 36 69.4
Lj4g0003656 Lotus japonicus HOM05D000003 ORTHO05D000007 6.3e-06 55.5 52 46.2
Sabra07G0074300 Salix brachista HOM05D000609 ORTHO05D000462 6.3e-06 55.5 75 33.3
Atru.chr2.1762 Acer truncatum HOM05D000003 ORTHO05D000022 8.2e-06 55.1 72 30.6


User provided reference genes

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