Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cpa.g.sc11.103 Carica papaya HOM05D000002 ORTHO05D004433 3.2e-65 251.5 121 100.0
Nn4g25779 Nelumbo nucifera HOM05D000002 ORTHO05D004433 3.7e-37 158.3 104 73.1
Nn8g40511 Nelumbo nucifera HOM05D000002 ORTHO05D000001 4.9e-37 157.9 104 73.1
Nn1g09492 Nelumbo nucifera HOM05D000002 ORTHO05D004433 1.0e-34 150.2 104 68.3
Nn8g39416 Nelumbo nucifera HOM05D000002 ORTHO05D000001 2.9e-34 148.7 104 69.2
Nn3g20324 Nelumbo nucifera HOM05D000002 ORTHO05D004433 8.6e-34 147.1 104 70.2
Nn4g23986 Nelumbo nucifera HOM05D000002 ORTHO05D000001 1.9e-33 146.0 104 67.3
Sopen09g027930 Solanum pennellii HOM05D000002 ORTHO05D004433 2.8e-32 142.1 108 64.8
Nn1g02075 Nelumbo nucifera HOM05D000002 ORTHO05D004433 6.1e-32 141.0 104 65.4
PSO675G3339 Papaver somniferum HOM05D000002 ORTHO05D004433 1.2e-27 126.7 105 56.2
Sopen03g007650 Solanum pennellii HOM05D000002 ORTHO05D004433 2.0e-27 125.9 104 59.6
Nn5g27722 Nelumbo nucifera HOM05D000002 ORTHO05D004433 8.6e-26 120.6 78 70.5
Thecc.03G106900 Theobroma cacao HOM05D000002 ORTHO05D004433 2.8e-24 115.5 78 69.2
Glyma.01G070601 Glycine max HOM05D000002 ORTHO05D004433 4.7e-24 114.8 105 51.4
Nn4g24889 Nelumbo nucifera HOM05D000002 ORTHO05D004433 1.5e-22 109.8 92 59.8
Nn8g40101 Nelumbo nucifera HOM05D000002 ORTHO05D004433 2.0e-22 109.4 108 53.7
CAN.G350.7 Capsicum annuum HOM05D000002 ORTHO05D004433 7.5e-22 107.5 69 69.6
MD01G1096700 Malus domestica HOM05D000002 ORTHO05D000001 1.7e-21 106.3 106 48.1
SHI10489 Sapria himalayana HOM05D000002 ORTHO05D004433 1.4e-20 103.2 108 44.4
SHI14609 Sapria himalayana HOM05D000002 ORTHO05D000001 1.4e-20 103.2 110 44.5
SHI45609 Sapria himalayana HOM05D000002 ORTHO05D000001 1.4e-20 103.2 106 43.4
SHI44323 Sapria himalayana HOM05D000002 ORTHO05D000001 2.4e-20 102.4 110 43.6
SHI18328 Sapria himalayana HOM05D000002 ORTHO05D000001 5.4e-20 101.3 106 43.4
ECA248G0687 Erigeron canadensis HOM05D000002 ORTHO05D000001 7.0e-20 100.9 106 43.4
SHI43060 Sapria himalayana HOM05D000002 ORTHO05D004433 2.7e-19 99.0 97 47.4
Nn1g02545 Nelumbo nucifera HOM05D000002 ORTHO05D004433 3.5e-19 98.6 107 48.6
SHI38827 Sapria himalayana HOM05D000002 ORTHO05D004433 3.5e-19 98.6 106 42.5
SHI32919 Sapria himalayana HOM05D000002 ORTHO05D004433 4.6e-19 98.2 97 47.4
SHI04168 Sapria himalayana HOM05D000002 ORTHO05D004433 6.0e-19 97.8 110 42.7
SHI32313 Sapria himalayana HOM05D000002 ORTHO05D004433 7.8e-19 97.4 97 47.4
ECA238G3349 Erigeron canadensis HOM05D000002 ORTHO05D000001 1.0e-18 97.1 106 39.6
ECA238G4719 Erigeron canadensis HOM05D000002 ORTHO05D000001 1.3e-18 96.7 106 39.6
SHI05549 Sapria himalayana HOM05D000002 ORTHO05D004433 3.0e-18 95.5 106 41.5
TAR610G0003 Trochodendron aralioides HOM05D000002 ORTHO05D000001 3.0e-18 95.5 91 46.2
ECA236G5067 Erigeron canadensis HOM05D000002 ORTHO05D000001 8.6e-18 94.0 106 38.7
SHI21269 Sapria himalayana HOM05D000002 ORTHO05D004433 1.5e-17 93.2 110 41.8
ECA246G5102 Erigeron canadensis HOM05D000002 ORTHO05D000001 1.9e-17 92.8 106 38.7
ECA233G1874 Erigeron canadensis HOM05D000002 ORTHO05D000001 2.5e-17 92.4 107 39.3
ECA240G4274 Erigeron canadensis HOM05D000002 ORTHO05D000001 2.5e-17 92.4 107 39.3
ECA247G3536 Erigeron canadensis HOM05D000002 ORTHO05D000001 2.5e-17 92.4 106 38.7
SHI45691 Sapria himalayana HOM05D000002 ORTHO05D004433 2.5e-17 92.4 106 40.6
ECA234G3440 Erigeron canadensis HOM05D000002 ORTHO05D000001 3.3e-17 92.0 106 36.8
MD14G1034300 Malus domestica HOM05D000038 ORTHO05D004433 4.3e-17 91.7 95 47.4
ECA238G4301 Erigeron canadensis HOM05D000002 ORTHO05D000001 7.3e-17 90.9 107 39.3
ECA246G2496 Erigeron canadensis HOM05D000002 ORTHO05D000001 1.2e-16 90.1 107 38.3
ECA246G3093 Erigeron canadensis HOM05D001467 ORTHO05D001214 1.2e-16 90.1 93 40.9
SHI04823 Sapria himalayana HOM05D000002 ORTHO05D004433 1.2e-16 90.1 95 45.3
SHI18425 Sapria himalayana HOM05D000002 ORTHO05D004433 1.2e-16 90.1 85 50.6
ECA234G1536 Erigeron canadensis HOM05D000002 ORTHO05D000001 1.6e-16 89.7 107 38.3
ECA240G0479 Erigeron canadensis HOM05D000002 ORTHO05D000001 1.6e-16 89.7 106 38.7
Nn5g30038 Nelumbo nucifera HOM05D000002 ORTHO05D004433 1.6e-16 89.7 104 47.1
SHI49936 Sapria himalayana HOM05D000002 ORTHO05D000001 1.6e-16 89.7 95 44.2
Cc04_g10140 Coffea canephora HOM05D000002 ORTHO05D004433 2.1e-16 89.4 93 41.9
ECA246G0537 Erigeron canadensis HOM05D000002 ORTHO05D000001 2.1e-16 89.4 93 41.9
SHI51732 Sapria himalayana HOM05D000002 ORTHO05D000001 2.8e-16 89.0 92 43.5
Nn2g15808 Nelumbo nucifera HOM05D000006 ORTHO05D004433 4.7e-16 88.2 78 59.0
SHI00406 Sapria himalayana HOM05D000002 ORTHO05D004433 6.2e-16 87.8 85 48.2
SHI10029 Sapria himalayana HOM05D000002 ORTHO05D004433 1.1e-15 87.0 85 48.2
Nn2g15606 Nelumbo nucifera HOM05D000006 ORTHO05D004433 1.8e-15 86.3 78 57.7
Ah.16g106880 Amaranthus hybridus HOM05D000002 ORTHO05D004433 2.3e-15 85.9 97 38.1
Nn2g13681 Nelumbo nucifera HOM05D000002 ORTHO05D004433 4.0e-15 85.1 84 42.9
Oeu035997.1 Olea europaea HOM05D000002 ORTHO05D004433 5.2e-15 84.7 91 40.7
SHI07649 Sapria himalayana HOM05D000002 ORTHO05D004433 6.8e-15 84.3 79 51.9
SHI16256 Sapria himalayana HOM05D000002 ORTHO05D004433 6.8e-15 84.3 79 51.9
Ah.04g159010 Amaranthus hybridus HOM05D000002 ORTHO05D004433 8.9e-15 84.0 93 39.8
ECA248G3794 Erigeron canadensis HOM05D000002 ORTHO05D000001 2.0e-14 82.8 106 34.0
Nn5g30039 Nelumbo nucifera HOM05D000002 ORTHO05D004433 2.0e-14 82.8 98 45.9
Ah.01g008310 Amaranthus hybridus HOM05D000002 ORTHO05D004433 2.6e-14 82.4 97 37.1
Ah.13g069620 Amaranthus hybridus HOM05D000002 ORTHO05D004433 2.6e-14 82.4 97 37.1
ECA233G2071 Erigeron canadensis HOM05D000002 ORTHO05D000001 2.6e-14 82.4 93 35.5
Sopen03g008290 Solanum pennellii HOM05D000002 ORTHO05D004433 3.4e-14 82.0 91 48.4
Ah.16g108610 Amaranthus hybridus HOM05D000002 ORTHO05D004433 4.4e-14 81.6 110 33.6
Glyma.07G117100 Glycine max HOM05D000002 ORTHO05D004433 7.5e-14 80.9 84 44.0
Gohir.D08G274150 Gossypium hirsutum HOM05D000002 ORTHO05D004433 7.5e-14 80.9 95 41.1
Gorai.004G292700 Gossypium raimondii HOM05D000002 ORTHO05D004433 7.5e-14 80.9 95 41.1
Oeu012846.1 Olea europaea HOM05D003971 ORTHO05D004433 7.5e-14 80.9 91 41.8
Ah.13g077590 Amaranthus hybridus HOM05D000002 ORTHO05D000001 1.3e-13 80.1 97 36.1
Prupe.7G032100 Prunus persica HOM05D000002 ORTHO05D004433 1.3e-13 80.1 81 44.4
Oeu001115.1 Olea europaea HOM05D000002 ORTHO05D004433 1.7e-13 79.7 91 40.7
Oeu034209.1 Olea europaea HOM05D000002 ORTHO05D004433 1.7e-13 79.7 91 38.5
Sopen00g007880 Solanum pennellii HOM05D000002 ORTHO05D004433 1.7e-13 79.7 93 38.7
MD01G1222200 Malus domestica HOM05D000002 ORTHO05D004433 2.2e-13 79.3 114 36.0
ECA233G2777 Erigeron canadensis HOM05D000002 ORTHO05D000001 4.9e-13 78.2 75 45.3
Gohir.D10G094150 Gossypium hirsutum HOM05D000002 ORTHO05D004433 4.9e-13 78.2 88 38.6
Ah.03g145180 Amaranthus hybridus HOM05D000002 ORTHO05D004433 1.1e-12 77.0 97 35.1
Dinv02026 Davidia involucrata HOM05D028709 ORTHO05D004433 1.1e-12 77.0 91 34.1
SHI06746 Sapria himalayana HOM05D000002 ORTHO05D004433 1.9e-12 76.3 106 34.0
FvH4_5g31431 Fragaria vesca HOM05D000002 ORTHO05D004433 3.2e-12 75.5 104 34.6
Sopen11g022850 Solanum pennellii HOM05D000002 ORTHO05D004433 1.2e-11 73.6 98 31.6
ECA248G0669 Erigeron canadensis HOM05D000002 ORTHO05D000001 1.6e-11 73.2 100 33.0
Sopen09g011970 Solanum pennellii HOM05D008571 ORTHO05D011280 1.6e-11 73.2 111 32.4
Nn1g06847 Nelumbo nucifera HOM05D000002 ORTHO05D004433 2.1e-11 72.8 93 35.5
Oeu055579.1 Olea europaea HOM05D000002 ORTHO05D004433 4.6e-11 71.6 91 36.3
SHI12756 Sapria himalayana HOM05D000002 ORTHO05D004433 4.6e-11 71.6 110 38.2
BolC8t49584H Brassica oleracea HOM05D000002 ORTHO05D004433 6.0e-11 71.2 95 35.8
RcHm_v2.0_Chr3g0481931 Rosa chinensis HOM05D000002 ORTHO05D000001 7.8e-11 70.9 104 33.7
SHI03937 Sapria himalayana HOM05D000002 ORTHO05D004433 7.8e-11 70.9 68 52.9
ECA234G3041 Erigeron canadensis HOM05D001549 ORTHO05D003098 1.0e-10 70.5 75 40.0
Nn1g03239 Nelumbo nucifera HOM05D000002 ORTHO05D004433 1.3e-10 70.1 107 39.3
Cc05_g05430 Coffea canephora HOM05D000002 ORTHO05D004433 1.7e-10 69.7 78 37.2
Sopen09g028980 Solanum pennellii HOM05D000002 ORTHO05D004433 1.7e-10 69.7 107 29.0
Sopen11g022370 Solanum pennellii HOM05D000036 ORTHO05D005472 3.0e-10 68.9 111 29.7
Oeu022773.1 Olea europaea HOM05D000002 ORTHO05D004433 5.1e-10 68.2 91 34.1
CAN.G401.9 Capsicum annuum HOM05D000002 ORTHO05D004433 1.1e-09 67.0 72 38.9
SHI22389 Sapria himalayana HOM05D000002 ORTHO05D004433 1.1e-09 67.0 78 39.7
Oeu050054.1 Olea europaea HOM05D000002 ORTHO05D004433 1.5e-09 66.6 91 35.2
CiPaw.08G098800 Carya illinoinensis HOM05D000002 ORTHO05D004433 1.9e-09 66.2 93 34.4
PGR044G1025 Punica granatum HOM05D000097 ORTHO05D000041 1.9e-09 66.2 89 36.0
Oeu003015.1 Olea europaea HOM05D000002 ORTHO05D004433 3.3e-09 65.5 82 32.9
PGR044G0355 Punica granatum HOM05D000097 ORTHO05D000041 7.3e-09 64.3 95 34.7
TWI15G0201 Tripterygium wilfordii HOM05D000097 ORTHO05D000041 9.5e-09 63.9 106 32.1
PGSC0003DMG400033163 Solanum tuberosum HOM05D000002 ORTHO05D004433 1.2e-08 63.5 78 32.1
Prupe.2G033500 Prunus persica HOM05D000002 ORTHO05D004433 2.8e-08 62.4 95 34.7
PGR044G2365 Punica granatum HOM05D000097 ORTHO05D000041 2.8e-08 62.4 98 32.7
QL05p063530 Quercus lobata HOM05D000002 ORTHO05D004433 2.8e-08 62.4 71 36.6
GSVIVG01011219001 Vitis vinifera HOM05D000097 ORTHO05D000041 2.8e-08 62.4 107 31.8
Oeu051241.1 Olea europaea HOM05D000002 ORTHO05D004433 4.7e-08 61.6 72 41.7
ECA233G2147 Erigeron canadensis HOM05D000509 ORTHO05D004433 6.2e-08 61.2 60 38.3
Sopen03g027090 Solanum pennellii HOM05D000002 ORTHO05D002065 6.2e-08 61.2 91 29.7
Oeu033717.1 Olea europaea HOM05D000002 ORTHO05D004433 8.1e-08 60.8 53 45.3
ATR0049G043 Amborella trichopoda HOM05D000097 ORTHO05D000041 1.1e-07 60.5 83 32.5
PGR044G1153 Punica granatum HOM05D000097 ORTHO05D000041 1.1e-07 60.5 95 31.6
RcHm_v2.0_Chr7g0242551 Rosa chinensis HOM05D000097 ORTHO05D000041 1.1e-07 60.5 105 31.4
AagrBONN_evm.TU.Sc2ySwM_340.2074 Anthoceros agrestis HOM05D000002 ORTHO05D000001 2.3e-07 59.3 103 33.0
Dinv41109 Davidia involucrata HOM05D000097 ORTHO05D009232 2.3e-07 59.3 91 33.0
PGR044G1072 Punica granatum HOM05D000097 ORTHO05D000041 2.3e-07 59.3 95 31.6
Gorai.012G076500 Gossypium raimondii HOM05D000002 ORTHO05D004433 5.2e-07 58.2 79 36.7
Nn1g01470 Nelumbo nucifera HOM05D000002 ORTHO05D004433 5.2e-07 58.2 93 31.2
GSVIVG01026533001 Vitis vinifera HOM05D000097 ORTHO05D000041 5.2e-07 58.2 99 33.3
FvH4_5g37090 Fragaria vesca HOM05D000097 ORTHO05D009232 6.8e-07 57.8 89 31.5
FAN18G4446 Fragaria x ananassa HOM05D000097 ORTHO05D000041 6.8e-07 57.8 107 33.6
TAR625G1425 Trochodendron aralioides HOM05D000097 ORTHO05D000041 6.8e-07 57.8 83 32.5
FAN08G0420 Fragaria x ananassa HOM05D000097 ORTHO05D009232 8.9e-07 57.4 89 31.5
Nn8g39618 Nelumbo nucifera HOM05D000002 ORTHO05D004433 8.9e-07 57.4 107 30.8
FAN18G2502 Fragaria x ananassa HOM05D000097 ORTHO05D000041 1.2e-06 57.0 106 34.9
Lsat_1_v5_gn_4_123500 Lactuca sativa HOM05D000002 ORTHO05D004433 1.2e-06 57.0 61 37.7
FvH4_1g02950 Fragaria vesca HOM05D000097 ORTHO05D000041 1.5e-06 56.6 97 33.0
FAN13G1601 Fragaria x ananassa HOM05D000097 ORTHO05D000041 1.5e-06 56.6 94 31.9
FAN28G0864 Fragaria x ananassa HOM05D000097 ORTHO05D000041 1.5e-06 56.6 97 33.0
ATR0736G044 Amborella trichopoda HOM05D000097 ORTHO05D009673 2.0e-06 56.2 82 36.6
CiPaw.13G052500 Carya illinoinensis HOM05D000097 ORTHO05D000041 2.0e-06 56.2 95 32.6
PGSC0003DMG400023646 Solanum tuberosum HOM05D000002 ORTHO05D004433 2.0e-06 56.2 104 29.8
vmacro12855 Vaccinium macrocarpon HOM05D000097 ORTHO05D000041 2.0e-06 56.2 85 31.8
Sabra08G0015500 Salix brachista HOM05D000097 ORTHO05D000041 2.6e-06 55.8 108 29.6
Sabra08G0015800 Salix brachista HOM05D000097 ORTHO05D000041 2.6e-06 55.8 108 29.6
FAN04G1606 Fragaria x ananassa HOM05D000097 ORTHO05D000041 3.4e-06 55.5 102 30.4
FAN04G1975 Fragaria x ananassa HOM05D001790 ORTHO05D007425 3.4e-06 55.5 102 30.4
SHI09919 Sapria himalayana HOM05D000002 ORTHO05D004433 3.4e-06 55.5 42 52.4
CSS0046925 Camellia sinensis var. sinensis HOM05D000002 ORTHO05D004433 4.4e-06 55.1 59 35.6
Haze_02587 Corylus avellana HOM05D000097 ORTHO05D000041 5.8e-06 54.7 102 32.4
FAN13G3280 Fragaria x ananassa HOM05D000097 ORTHO05D000041 7.6e-06 54.3 93 28.0
Rhsim10G0149800 Rhododendron simsii HOM05D000097 ORTHO05D000041 7.6e-06 54.3 94 30.9
TAR625G0793 Trochodendron aralioides HOM05D000097 ORTHO05D000041 7.6e-06 54.3 83 30.1
TWI15G0307 Tripterygium wilfordii HOM05D000097 ORTHO05D000041 9.9e-06 53.9 104 26.0


User provided reference genes

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