Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cpa.g.sc109.43 Carica papaya HOM05D004680 ORTHO05D005939 7.6e-266 919.8 434 100.0
Carub.0003s1595 Capsella rubella HOM05D004680 ORTHO05D005939 3.2e-224 781.6 437 81.9
THA.LOC104817975 Tarenaya hassleriana HOM05D004680 ORTHO05D005939 5.5e-224 780.8 444 81.3
Sp3g14570 Schrenkiella parvula HOM05D004680 ORTHO05D005939 9.4e-224 780.0 437 81.7
Thhalv10020703m.g Eutrema salsugineum HOM05D004680 ORTHO05D005939 1.2e-223 779.6 437 81.7
THA.LOC104815523 Tarenaya hassleriana HOM05D004680 ORTHO05D005939 3.9e-222 774.6 444 80.9
AL3G28890 Arabidopsis lyrata HOM05D004680 ORTHO05D005939 8.8e-222 773.5 437 80.8
AT3G16200 Arabidopsis thaliana HOM05D004680 ORTHO05D005939 1.3e-220 769.6 437 80.1
CARHR091390 Cardamine hirsuta HOM05D004680 ORTHO05D005939 1.3e-220 769.6 437 80.3
C05p50300 Brassica napus HOM05D004680 ORTHO05D005939 2.6e-218 761.9 438 79.9
A05p33300 Brassica napus HOM05D004680 ORTHO05D005939 3.4e-218 761.5 438 79.9
BraA05t22155Z Brassica rapa HOM05D004680 ORTHO05D005939 7.7e-218 760.4 438 79.5
Manes.11G036700 Manihot esculenta HOM05D004680 ORTHO05D005939 7.7e-218 760.4 442 80.8
BraA01t03850Z Brassica rapa HOM05D004680 ORTHO05D005939 1.4e-216 756.1 438 79.0
A01p37900 Brassica napus HOM05D004680 ORTHO05D005939 2.5e-216 755.4 438 79.0
BcaC09g48589 Brassica carinata HOM05D004680 ORTHO05D005939 4.2e-216 754.6 437 78.7
BolC5t33780H Brassica oleracea HOM05D004680 ORTHO05D005939 6.7e-214 747.3 433 79.0
C01p48080 Brassica napus HOM05D004680 ORTHO05D005939 2.0e-213 745.7 438 78.3
BolC1t04776H Brassica oleracea HOM05D004680 ORTHO05D005939 2.0e-213 745.7 438 78.1
Duzib192G0285 Durio zibethinus HOM05D004680 ORTHO05D005939 4.8e-212 741.1 450 77.1
TWI75G1773 Tripterygium wilfordii HOM05D004680 ORTHO05D005939 1.8e-211 739.2 440 80.0
Sabra01G0153900 Salix brachista HOM05D004680 ORTHO05D005939 7.0e-211 737.3 437 79.4
Potri.003G051200 Populus trichocarpa HOM05D004680 ORTHO05D005939 1.0e-209 733.4 437 78.3
Thecc.06G095100 Theobroma cacao HOM05D004680 ORTHO05D005939 1.3e-209 733.0 450 75.8
Aa31LG8G3340 Aethionema arabicum HOM05D004680 ORTHO05D005939 3.8e-209 731.5 426 77.2
Dinv30468 Davidia involucrata HOM05D004680 ORTHO05D005939 1.4e-208 729.6 436 80.0
Gorai.009G136000 Gossypium raimondii HOM05D004680 ORTHO05D005939 2.1e-207 725.7 450 74.4
Duzib235G0372 Durio zibethinus HOM05D004680 ORTHO05D005939 4.7e-207 724.5 450 75.1
Hma1.2p1_1262F.1_g271230 Hydrangea macrophylla HOM05D004680 ORTHO05D005939 4.7e-207 724.5 438 79.7
Gorai.011G073000 Gossypium raimondii HOM05D004680 ORTHO05D005939 6.1e-207 724.2 450 75.3
Potri.001G186200 Populus trichocarpa HOM05D004680 ORTHO05D005939 6.1e-207 724.2 436 78.2
Gohir.A05G127800 Gossypium hirsutum HOM05D004680 ORTHO05D005939 1.4e-206 723.0 450 74.2
Gohir.D10G069100 Gossypium hirsutum HOM05D004680 ORTHO05D005939 1.4e-206 723.0 450 75.6
Nitab4.5_0000351g0010 Nicotiana tabacum HOM05D004680 ORTHO05D005939 3.0e-206 721.8 434 76.3
RcHm_v2.0_Chr2g0139361 Rosa chinensis HOM05D004680 ORTHO05D005939 3.0e-206 721.8 434 77.2
Sabra03G0027900 Salix brachista HOM05D004680 ORTHO05D005939 3.9e-206 721.5 436 77.5
Nitab4.5_0009963g0010 Nicotiana tabacum HOM05D004680 ORTHO05D005939 6.7e-206 720.7 432 77.3
ClCG07G013200 Citrullus lanatus HOM05D004680 ORTHO05D005939 1.1e-205 719.9 435 77.2
TWI12G0154 Tripterygium wilfordii HOM05D004680 ORTHO05D005939 1.1e-205 719.9 439 78.4
Cfa002107 Carpinus fangiana HOM05D004680 ORTHO05D005939 1.5e-205 719.5 438 77.4
Peaxi162Scf00015g00135 Petunia axillaris HOM05D004680 ORTHO05D005939 1.5e-205 719.5 434 77.2
Gohir.A10G067300 Gossypium hirsutum HOM05D004680 ORTHO05D005939 2.0e-205 719.2 449 75.9
PGR102G2014 Punica granatum HOM05D004680 ORTHO05D005939 2.6e-205 718.8 437 76.7
Ciclev10025565m.g Citrus clementina HOM05D004680 ORTHO05D005939 3.3e-205 718.4 442 76.7
CANSAT56G3143 Cannabis sativa HOM05D004680 ORTHO05D005939 5.7e-205 717.6 437 77.3
Solyc03g120490.3 Solanum lycopersicum HOM05D004680 ORTHO05D005939 5.7e-205 717.6 434 77.4
FvH4_6g31940 Fragaria vesca HOM05D004680 ORTHO05D005939 7.4e-205 717.2 436 78.0
Sopen03g039370 Solanum pennellii HOM05D004680 ORTHO05D005939 1.3e-204 716.5 434 77.2
TAR383G0102 Trochodendron aralioides HOM05D004680 ORTHO05D005939 1.3e-204 716.5 435 77.0
Sc12g0009530 Simmondsia chinensis HOM05D004680 ORTHO05D005939 1.7e-204 716.1 433 76.9
GSVIVG01017045001 Vitis vinifera HOM05D004680 ORTHO05D005939 2.8e-204 715.3 436 78.2
MSTRG.22656 Avicennia marina HOM05D004680 ORTHO05D005939 3.7e-204 714.9 444 74.5
EL10Ac9g22049 Beta vulgaris HOM05D004680 ORTHO05D005939 3.7e-204 714.9 439 75.9
MD09G1207900 Malus domestica HOM05D004680 ORTHO05D005939 3.7e-204 714.9 436 76.1
PGSC0003DMG400002632 Solanum tuberosum HOM05D004680 ORTHO05D005939 3.7e-204 714.9 434 77.2
FAN09G3354 Fragaria x ananassa HOM05D004680 ORTHO05D005939 6.3e-204 714.1 436 77.1
CSS0039709 Camellia sinensis var. sinensis HOM05D004680 ORTHO05D005939 2.4e-203 712.2 436 76.8
Migut.I00930 Erythranthe guttata HOM05D004680 ORTHO05D005939 9.1e-203 710.3 444 74.5
Eucgr.F03051 Eucalyptus grandis HOM05D004680 ORTHO05D005939 9.1e-203 710.3 448 75.4
SalBow2G2497 Salvia bowleyana HOM05D004680 ORTHO05D005939 9.1e-203 710.3 441 76.4
AUR62031868 Chenopodium quinoa HOM05D004680 ORTHO05D005939 1.2e-202 709.9 438 75.3
CsaV3_3G023810 Cucumis sativus L. HOM05D004680 ORTHO05D005939 1.2e-202 709.9 433 75.8
Prupe.3G064100 Prunus persica HOM05D004680 ORTHO05D005939 1.2e-202 709.9 437 75.7
Medtr2g101480 Medicago truncatula HOM05D004680 ORTHO05D005939 1.6e-202 709.5 438 77.4
MELO3C012983.2 Cucumis melo HOM05D004680 ORTHO05D005939 3.5e-202 708.4 435 76.3
Nitab4.5_0006985g0040 Nicotiana tabacum HOM05D004680 ORTHO05D005939 4.5e-202 708.0 443 75.4
AUR62016515 Chenopodium quinoa HOM05D004680 ORTHO05D005939 1.3e-201 706.4 438 74.9
QL05p021321 Quercus lobata HOM05D004680 ORTHO05D005939 3.8e-201 704.9 453 75.3
Rhsim08G0225100 Rhododendron simsii HOM05D004680 ORTHO05D005939 3.8e-201 704.9 444 76.8
Cc04_g02880 Coffea canephora HOM05D004680 ORTHO05D005939 8.5e-201 703.7 443 76.1
Ah.01g021760 Amaranthus hybridus HOM05D004680 ORTHO05D005939 1.5e-200 703.0 433 75.5
Migut.D01009 Erythranthe guttata HOM05D004680 ORTHO05D005939 1.9e-200 702.6 440 76.4
TPR.G37217 Trifolium pratense HOM05D004680 ORTHO05D005939 2.5e-200 702.2 437 76.9
CiPaw.02G147900 Carya illinoinensis HOM05D004680 ORTHO05D005939 4.2e-200 701.4 439 76.8
Nn3g18134 Nelumbo nucifera HOM05D004680 ORTHO05D005939 4.2e-200 701.4 436 76.6
vmacro18875 Vaccinium macrocarpon HOM05D004680 ORTHO05D005939 4.2e-200 701.4 440 75.9
Ca_01140_v3 Cicer arietinum L. HOM05D004680 ORTHO05D005939 5.5e-200 701.0 442 75.8
Phvul.005G169700 Phaseolus vulgaris HOM05D004680 ORTHO05D005939 5.5e-200 701.0 440 74.8
Aqoxy7G01528 Aquilegia oxysepala HOM05D004680 ORTHO05D005939 7.2e-200 700.7 435 75.6
Glyma.15G017600 Glycine max HOM05D004680 ORTHO05D005939 9.4e-200 700.3 439 76.3
Sed0009248 Sechium edule HOM05D004680 ORTHO05D005939 1.2e-199 699.9 432 75.5
MD17G1189000 Malus domestica HOM05D004680 ORTHO05D005939 2.1e-199 699.1 435 74.7
Nn2g11656 Nelumbo nucifera HOM05D004680 ORTHO05D005939 3.6e-199 698.4 401 79.6
Hund06644 Selenicereus undatus HOM05D004680 ORTHO05D005939 3.6e-199 698.4 433 75.1
Lj3g0026249 Lotus japonicus HOM05D004680 ORTHO05D005939 6.1e-199 697.6 436 75.2
Glyma.13G356500 Glycine max HOM05D004680 ORTHO05D005939 5.2e-198 694.5 436 75.0
SGA_v2.0_scaffold69G23355 Striga asiatica HOM05D004680 ORTHO05D005939 1.2e-197 693.3 445 73.5
Lalb_Chr22g0351431 Lupinus albus HOM05D004680 ORTHO05D005939 1.5e-197 693.0 439 73.8
HanXRQChr02g0032341 Helianthus annuus HOM05D004680 ORTHO05D005939 4.4e-197 691.4 439 73.3
FAN14G5860 Fragaria x ananassa HOM05D004680 ORTHO05D005939 5.7e-197 691.0 452 73.9
Sed0024237 Sechium edule HOM05D004680 ORTHO05D005939 2.2e-196 689.1 433 75.5
CSS0028346 Camellia sinensis var. sinensis HOM05D004680 ORTHO05D005939 3.7e-196 688.3 431 75.6
MSTRG.9470 Avicennia marina HOM05D004680 ORTHO05D005939 7.0e-195 684.1 445 74.2
Lalb_Chr24g0395991 Lupinus albus HOM05D004680 ORTHO05D005939 2.0e-194 682.6 442 72.6
Lalb_Chr14g0373141 Lupinus albus HOM05D004680 ORTHO05D005939 4.5e-194 681.4 435 74.0
PSO566G0328 Papaver somniferum HOM05D004680 ORTHO05D005939 4.5e-194 681.4 443 72.2
PSO782G2876 Papaver somniferum HOM05D004680 ORTHO05D005939 1.3e-193 679.9 407 76.7
arahy.Tifrunner.gnm1.ann1.0TRA3C Arachis hypogaea HOM05D004680 ORTHO05D005939 1.7e-193 679.5 364 83.0
arahy.Tifrunner.gnm1.ann1.I8Y04W Arachis hypogaea HOM05D004680 ORTHO05D005939 1.7e-193 679.5 364 83.0
Manes.04G131400 Manihot esculenta HOM05D004680 ORTHO05D005939 3.8e-193 678.3 443 73.4
Oeu050619.1 Olea europaea HOM05D004680 ORTHO05D005939 7.2e-192 674.1 514 65.6
Nitab4.5_0011578g0010 Nicotiana tabacum HOM05D004680 ORTHO05D005939 1.6e-191 672.9 433 74.6
Peaxi162Scf00207g01238 Petunia axillaris HOM05D004680 ORTHO05D005939 1.8e-190 669.5 433 74.6
VMungo1080G0622 Vigna mungo HOM05D004680 ORTHO05D005939 1.8e-190 669.5 476 68.3
SalBow7G2677 Salvia bowleyana HOM05D004680 ORTHO05D005939 6.8e-190 667.5 429 73.2
MBI04_g14933_MAGBIO Magnolia biondii HOM05D004680 ORTHO05D005939 1.2e-189 666.8 440 73.6
SGA_v2.0_scaffold4G02014 Striga asiatica HOM05D004680 ORTHO05D005939 1.2e-189 666.8 440 73.6
ECA247G0440 Erigeron canadensis HOM05D004680 ORTHO05D005939 9.8e-189 663.7 430 73.5
Lsat_1_v5_gn_1_34800 Lactuca sativa HOM05D004680 ORTHO05D005939 1.3e-188 663.3 428 73.8
ATR0315G163 Amborella trichopoda HOM05D004680 ORTHO05D005939 9.1e-187 657.1 385 78.2
CDE02G3046 Ceratophyllum demersum HOM05D004680 ORTHO05D005939 1.6e-186 656.4 434 71.0
DCAR_023071 Daucus carota HOM05D004680 ORTHO05D005939 1.6e-183 646.4 435 70.1
unitig_899.g14773 Utricularia gibba HOM05D004680 ORTHO05D005939 1.4e-179 633.3 438 67.8
Atru.BG.177.p Acer truncatum HOM05D004680 ORTHO05D005939 4.1e-179 631.7 322 89.4
Actinidia32715 Actinidia chinensis HOM05D004680 ORTHO05D005939 2.9e-177 625.5 426 71.6
SGA_v2.0_scaffold5G02541 Striga asiatica HOM05D004680 ORTHO05D005939 5.6e-176 621.3 442 68.8
HPP92_021671 Vanilla planifolia HOM05D004680 ORTHO05D005939 2.3e-174 615.9 452 65.5
QL11p016400 Quercus lobata HOM05D004680 ORTHO05D005939 6.4e-172 607.8 326 85.0
Actinidia21693 Actinidia chinensis HOM05D004680 ORTHO05D005939 6.0e-170 601.3 347 79.8
Lsat_1_v5_gn_4_101400 Lactuca sativa HOM05D004680 ORTHO05D005939 8.3e-164 580.9 425 65.4
SEGI_20570 Sequoiadendron giganteum HOM05D004680 ORTHO05D005939 3.5e-162 575.5 358 70.9
Zm00001eb270670 Zea mays HOM05D004680 ORTHO05D005939 7.8e-162 574.3 410 67.1
Psat5g297320 Pisum sativum HOM05D004680 ORTHO05D005939 1.2e-157 560.5 289 86.5
CiPaw.01G234300 Carya illinoinensis HOM05D004680 ORTHO05D005939 2.0e-157 559.7 291 85.9
FAN05G4921 Fragaria x ananassa HOM05D004680 ORTHO05D005939 2.9e-156 555.8 289 85.8
SHI25904 Sapria himalayana HOM05D004680 ORTHO05D005939 2.8e-151 539.3 290 82.8
Dinv38006 Davidia involucrata HOM05D004680 ORTHO05D005939 4.9e-148 528.5 340 75.0
SMO147G0400 Selaginella moellendorffii HOM05D004680 ORTHO05D005939 9.2e-147 524.2 334 68.3
COL.COLO4_30464 Corchorus olitorius HOM05D004680 ORTHO05D005939 1.0e-145 520.8 270 86.7
Hma1.2p1_1617F.1_g293780 Hydrangea macrophylla HOM05D004680 ORTHO05D005939 2.0e-141 506.5 393 66.9
Haze_16340 Corylus avellana HOM05D004680 ORTHO05D005939 6.0e-130 468.4 302 75.5
Gohir.D05G132300 Gossypium hirsutum HOM05D004680 ORTHO05D005939 6.0e-130 468.4 309 70.6
Sc12g0009700 Simmondsia chinensis HOM05D004680 ORTHO05D005939 1.1e-126 457.6 296 73.3
Pp3c17_20690 Physcomitrium patens HOM05D004680 ORTHO05D005939 4.9e-124 448.7 380 52.9
AagrBONN_evm.TU.Sc2ySwM_369.193 Anthoceros agrestis HOM05D004680 ORTHO05D005939 6.0e-122 441.8 285 69.1
SMO358G0106 Selaginella moellendorffii HOM05D004680 ORTHO05D005939 1.3e-108 397.5 342 50.9
HPP92_008141 Vanilla planifolia HOM05D004680 ORTHO05D005939 4.1e-94 349.4 271 63.5
SMO077G0005 Selaginella moellendorffii HOM05D004680 ORTHO05D005939 1.1e-91 341.3 318 49.1
SMO114G0076 Selaginella moellendorffii HOM05D004680 ORTHO05D005939 2.4e-86 323.6 332 45.5
Haze_11589 Corylus avellana HOM05D004680 ORTHO05D005939 2.3e-68 263.8 139 84.2
Oeu063940.2 Olea europaea HOM05D004680 ORTHO05D007319 3.0e-65 253.4 179 66.5
TWI75G1313 Tripterygium wilfordii HOM05D004680 ORTHO05D005939 4.1e-54 216.5 109 88.1
PGSC0003DMG400007734 Solanum tuberosum HOM05D004680 ORTHO05D005939 9.2e-54 215.3 119 79.8
HPP92_008142 Vanilla planifolia HOM05D004680 ORTHO05D005939 1.1e-51 208.4 124 74.2
SEGI_33813 Sequoiadendron giganteum HOM05D004680 ORTHO05D005939 1.1e-49 201.8 137 66.4
Oeu040360.1 Olea europaea HOM05D004680 ORTHO05D011268 3.2e-46 190.3 127 68.5
Hma1.2p1_1576F.1_g291660 Hydrangea macrophylla HOM05D004680 ORTHO05D005939 4.4e-32 143.3 85 78.8
Hma1.2p1_0033F.1_g020650 Hydrangea macrophylla HOM05D004680 ORTHO05D005939 1.3e-31 141.7 85 77.6
Zm00001eb389580 Zea mays HOM05D004680 ORTHO05D000383 2.1e-29 134.4 80 76.2
Atru.chr1.3422 Acer truncatum HOM05D004680 ORTHO05D005939 7.3e-27 125.9 101 60.4
Solyc07g014600.2 Solanum lycopersicum HOM05D004680 ORTHO05D005939 4.2e-14 83.6 52 71.2
QL11p016407 Quercus lobata HOM05D004680 ORTHO05D039099 2.6e-08 64.3 126 38.9
BcaB01g02088 Brassica carinata HOM05D004680 ORTHO05D039099 2.9e-07 60.8 30 80.0
HanXRQChr10g0311001 Helianthus annuus HOM05D004680 ORTHO05D005939 3.8e-07 60.5 113 33.6
SHI25903 Sapria himalayana HOM05D004680 ORTHO05D365905 9.3e-06 55.8 118 33.9


User provided reference genes

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