Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cpa.g.sc108.66 Carica papaya HOM05D008944 ORTHO05D012260 9.7e-104 380.6 254 100.0
Cfa007371 Carpinus fangiana HOM05D018456 ORTHO05D024862 3.5e-21 106.3 115 54.8
Haze_14737 Corylus avellana HOM05D018456 ORTHO05D024862 1.0e-20 104.8 187 42.8
Dinv35105 Davidia involucrata HOM05D008944 ORTHO05D012715 1.3e-20 104.4 258 36.4
Manes.17G112400 Manihot esculenta HOM05D013434 ORTHO05D014659 3.6e-18 96.3 59 86.4
TAR622G0869 Trochodendron aralioides HOM05D008944 ORTHO05D012260 1.4e-17 94.4 121 51.2
Hma1.2p1_0999F.1_g246230 Hydrangea macrophylla HOM05D008944 ORTHO05D012260 4.0e-17 92.8 233 35.6
CiPaw.03G043400 Carya illinoinensis HOM05D018456 ORTHO05D024862 1.2e-16 91.3 184 39.1
Atru.chr6.2390 Acer truncatum HOM05D008944 ORTHO05D012260 3.4e-16 89.7 117 50.4
Ciclev10014006m.g Citrus clementina HOM05D018456 ORTHO05D012260 4.5e-16 89.4 241 36.1
COL.COLO4_29109 Corchorus olitorius HOM05D010821 ORTHO05D012260 1.3e-15 87.8 75 70.7
Lju41A41T31 Lonicera japonica HOM05D008944 ORTHO05D012260 1.7e-15 87.4 82 65.9
CSS0002578 Camellia sinensis var. sinensis HOM05D008944 ORTHO05D012715 2.2e-15 87.0 261 33.7
GSVIVG01032411001 Vitis vinifera HOM05D000662 ORTHO05D012715 2.2e-15 87.0 245 37.1
Thecc.04G017000 Theobroma cacao HOM05D010821 ORTHO05D012260 2.9e-15 86.7 265 33.6
Duzib264G0142 Durio zibethinus HOM05D010821 ORTHO05D012260 3.8e-15 86.3 262 32.8
RcHm_v2.0_Chr2g0172861 Rosa chinensis HOM05D011862 ORTHO05D014222 3.8e-15 86.3 75 72.0
Gohir.A05G355900 Gossypium hirsutum HOM05D010821 ORTHO05D012260 6.4e-15 85.5 219 35.6
MBI10_g00741_MAGBIO Magnolia biondii HOM05D012441 ORTHO05D013726 6.4e-15 85.5 57 77.2
Glyma.16G071500 Glycine max HOM05D013652 ORTHO05D016227 8.4e-15 85.1 68 70.6
Rhsim08G0050800 Rhododendron simsii HOM05D008944 ORTHO05D012715 1.4e-14 84.3 256 34.4
ECA232G4849 Erigeron canadensis HOM05D018074 ORTHO05D020589 2.4e-14 83.6 69 71.0
TWI36G0429 Tripterygium wilfordii HOM05D013434 ORTHO05D014659 2.4e-14 83.6 87 56.3
Potri.001G345300 Populus trichocarpa HOM05D013434 ORTHO05D014659 7.1e-14 82.0 61 77.0
QL02p074766 Quercus lobata HOM05D018456 ORTHO05D024862 1.6e-13 80.9 239 37.7
MSTRG.24036 Avicennia marina HOM05D025081 ORTHO05D019527 2.7e-13 80.1 60 70.0
Gohir.D04G057300 Gossypium hirsutum HOM05D010821 ORTHO05D012260 4.6e-13 79.3 247 34.0
Gorai.012G064000 Gossypium raimondii HOM05D010821 ORTHO05D012260 6.0e-13 79.0 247 34.0
PGR142G1054 Punica granatum HOM05D012441 ORTHO05D013726 1.0e-12 78.2 76 61.8
FAN02G2635 Fragaria x ananassa HOM05D011862 ORTHO05D014222 3.0e-12 76.6 75 64.0
Nitab4.5_0007124g0010 Nicotiana tabacum HOM05D012441 ORTHO05D013726 3.0e-12 76.6 167 35.9
Aqoxy5G03794 Aquilegia oxysepala HOM05D012441 ORTHO05D013726 5.1e-12 75.9 52 76.9
Phvul.008G154713 Phaseolus vulgaris HOM05D013652 ORTHO05D016227 5.1e-12 75.9 68 64.7
HanXRQChr09g0255141 Helianthus annuus HOM05D018074 ORTHO05D020589 8.7e-12 75.1 69 63.8
Migut.H00079 Erythranthe guttata HOM05D025081 ORTHO05D019527 1.5e-11 74.3 58 67.2
Lalb_Chr14g0362751 Lupinus albus HOM05D013652 ORTHO05D016227 2.5e-11 73.6 74 60.8
Prupe.3G291300 Prunus persica HOM05D011862 ORTHO05D014222 3.3e-11 73.2 60 68.3
SalBow1G1948 Salvia bowleyana HOM05D025081 ORTHO05D019527 3.3e-11 73.2 60 68.3
Dinv33443 Davidia involucrata HOM05D008944 ORTHO05D012715 5.6e-11 72.4 57 68.4
Duzib187G0380 Durio zibethinus HOM05D010821 ORTHO05D012260 5.6e-11 72.4 266 32.3
FAN14G4966 Fragaria x ananassa HOM05D011862 ORTHO05D014222 9.6e-11 71.6 239 34.3
SalBow1G7921 Salvia bowleyana HOM05D025081 ORTHO05D019527 1.6e-10 70.9 60 66.7
Actinidia36113 Actinidia chinensis HOM05D008944 ORTHO05D017205 3.6e-10 69.7 55 72.7
Oeu054621.3 Olea europaea HOM05D039831 ORTHO05D036970 4.8e-10 69.3 239 31.4
FvH4_6g51240 Fragaria vesca HOM05D011862 ORTHO05D014222 6.2e-10 68.9 262 31.3
FAN09G0781 Fragaria x ananassa HOM05D011862 ORTHO05D014222 6.2e-10 68.9 262 31.3
MD17G1027400 Malus domestica HOM05D011862 ORTHO05D014222 6.2e-10 68.9 74 58.1
Cc07_g01740 Coffea canephora HOM05D008944 ORTHO05D012260 8.1e-10 68.6 248 32.3
Lsat_1_v5_gn_4_183881 Lactuca sativa HOM05D018074 ORTHO05D020589 8.1e-10 68.6 93 49.5
CDE07G1283 Ceratophyllum demersum HOM05D012441 ORTHO05D013726 1.1e-09 68.2 75 56.0
TAR374G0422 Trochodendron aralioides HOM05D003163 ORTHO05D003504 1.1e-09 68.2 215 38.1
PGSC0003DMG400012631 Solanum tuberosum HOM05D012441 ORTHO05D013726 1.4e-09 67.8 240 32.5
THA.LOC104805961 Tarenaya hassleriana HOM05D011342 ORTHO05D013726 1.8e-09 67.4 267 31.8
Nitab4.5_0002468g0060 Nicotiana tabacum HOM05D012441 ORTHO05D013726 1.2e-08 64.7 246 28.5
EL10Ac6g13401 Beta vulgaris HOM05D036575 ORTHO05D031691 2.6e-08 63.5 72 55.6
BcaB02g07948 Brassica carinata HOM05D011342 ORTHO05D013682 3.4e-08 63.2 72 56.9
Gohir.D07G229800 Gossypium hirsutum HOM05D010821 ORTHO05D029264 3.4e-08 63.2 240 30.0
Lj1g0010976 Lotus japonicus HOM05D013652 ORTHO05D016227 3.4e-08 63.2 77 58.4
Sp7g01470 Schrenkiella parvula HOM05D011342 ORTHO05D013682 3.4e-08 63.2 71 53.5
AL7G49380 Arabidopsis lyrata HOM05D011342 ORTHO05D013682 4.5e-08 62.8 56 62.5
HPP92_003080 Vanilla planifolia HOM05D008944 ORTHO05D012260 9.9e-08 61.6 81 49.4
CARHR261570 Cardamine hirsuta HOM05D011342 ORTHO05D013682 1.3e-07 61.2 67 59.7
Sc03g0007480 Simmondsia chinensis HOM05D008944 ORTHO05D019527 1.3e-07 61.2 57 57.9
vmacro05865 Vaccinium macrocarpon HOM05D008944 ORTHO05D017205 1.3e-07 61.2 65 61.5
Gorai.001G264900 Gossypium raimondii HOM05D010821 ORTHO05D029264 2.9e-07 60.1 240 29.6
Peaxi162Scf00129g01541 Petunia axillaris HOM05D012441 ORTHO05D013726 2.9e-07 60.1 42 73.8
Rhsim10G0017100 Rhododendron simsii HOM05D008944 ORTHO05D017205 2.9e-07 60.1 63 61.9
Sopen02g031170 Solanum pennellii HOM05D012441 ORTHO05D013726 2.9e-07 60.1 239 30.1
Gohir.A07G223100 Gossypium hirsutum HOM05D010821 ORTHO05D029264 4.9e-07 59.3 240 29.2
Hund12983 Selenicereus undatus HOM05D008944 ORTHO05D012260 4.9e-07 59.3 69 53.6
CAN.G473.9 Capsicum annuum HOM05D012441 ORTHO05D013726 8.4e-07 58.5 246 30.5
AT5G40450 Arabidopsis thaliana HOM05D011342 ORTHO05D013682 1.1e-06 58.2 204 30.9
Sabra16G0224300 Salix brachista HOM05D013434 ORTHO05D014659 2.4e-06 57.0 251 28.3
Aa31LG9G1170 Aethionema arabicum HOM05D011342 ORTHO05D013682 3.2e-06 56.6 257 31.5
Duzib147G0652 Durio zibethinus HOM05D010821 ORTHO05D029264 4.2e-06 56.2 271 31.0
BraA07t29728Z Brassica rapa HOM05D011342 ORTHO05D013682 5.5e-06 55.8 246 30.9
PSO782G2207 Papaver somniferum HOM05D034920 ORTHO05D037276 5.5e-06 55.8 255 30.6
VMungo1383G0030 Vigna mungo HOM05D013652 ORTHO05D016227 5.5e-06 55.8 253 30.4
Ah.16g107600 Amaranthus hybridus HOM05D008944 ORTHO05D019527 7.1e-06 55.5 71 54.9
BcaC08g44455 Brassica carinata HOM05D011342 ORTHO05D013682 7.1e-06 55.5 246 28.9
BolC6t37106H Brassica oleracea HOM05D011342 ORTHO05D013682 7.1e-06 55.5 246 28.9
Thhalv10027617m.g Eutrema salsugineum HOM05D011342 ORTHO05D013682 7.1e-06 55.5 75 49.3


User provided reference genes

Program Settings