Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cpa.g.sc108.59 Carica papaya HOM05D004010 ORTHO05D004995 0.0e+00 1414.4 733 100.0
Thecc.04G015900 Theobroma cacao HOM05D004010 ORTHO05D004995 1.7e-265 919.5 729 66.5
Duzib187G0443 Durio zibethinus HOM05D004010 ORTHO05D004995 2.0e-263 912.5 730 66.2
COL.COLO4_29097 Corchorus olitorius HOM05D004010 ORTHO05D004995 7.7e-263 910.6 729 65.8
Cfa007379 Carpinus fangiana HOM05D004010 ORTHO05D004995 8.3e-257 890.6 730 64.7
QL02p075066 Quercus lobata HOM05D004010 ORTHO05D004995 5.9e-255 884.4 738 63.7
Gorai.006G032700 Gossypium raimondii HOM05D004010 ORTHO05D004995 1.1e-253 880.2 729 64.7
CiPaw.03G042500 Carya illinoinensis HOM05D004010 ORTHO05D004995 1.3e-249 866.7 729 63.5
Dinv33448 Davidia involucrata HOM05D004010 ORTHO05D004995 2.9e-249 865.5 731 63.5
Prupe.3G290300 Prunus persica HOM05D004010 ORTHO05D004995 2.9e-249 865.5 729 63.4
MD09G1028200 Malus domestica HOM05D004010 ORTHO05D004995 4.0e-243 845.1 729 62.3
GSVIVG01032418001 Vitis vinifera HOM05D004010 ORTHO05D004995 2.2e-241 839.3 729 60.9
CANSAT64G1980 Cannabis sativa HOM05D004010 ORTHO05D004995 9.2e-240 833.9 729 60.8
RcHm_v2.0_Chr2g0173001 Rosa chinensis HOM05D004010 ORTHO05D004995 3.5e-239 832.0 731 61.3
FAN05G5546 Fragaria x ananassa HOM05D004010 ORTHO05D004995 1.0e-238 830.5 731 60.7
MD17G1029800 Malus domestica HOM05D004010 ORTHO05D004995 2.3e-238 829.3 730 61.2
FAN14G1482 Fragaria x ananassa HOM05D004010 ORTHO05D004995 5.1e-238 828.2 731 60.5
TWI36G0979 Tripterygium wilfordii HOM05D004010 ORTHO05D004995 4.3e-237 825.1 729 60.8
Potri.001G346000 Populus trichocarpa HOM05D004010 ORTHO05D004995 7.3e-237 824.3 729 61.2
FvH4_6g51330 Fragaria vesca HOM05D004010 ORTHO05D004995 1.2e-236 823.5 731 60.3
Manes.17G113000 Manihot esculenta HOM05D004010 ORTHO05D004995 2.8e-236 822.4 720 60.8
TAR371G0622 Trochodendron aralioides HOM05D004010 ORTHO05D004995 2.6e-234 815.8 729 59.9
Haze_14730 Corylus avellana HOM05D004010 ORTHO05D004995 3.8e-233 812.0 732 61.2
FAN09G4321 Fragaria x ananassa HOM05D004010 ORTHO05D004995 1.4e-232 810.1 731 59.4
THA.LOC104825324 Tarenaya hassleriana HOM05D004010 ORTHO05D004995 5.8e-226 788.1 723 57.7
Thhalv10003508m.g Eutrema salsugineum HOM05D004010 ORTHO05D004995 2.9e-225 785.8 724 58.6
Sp2g16800 Schrenkiella parvula HOM05D004010 ORTHO05D004995 2.7e-223 779.2 724 58.0
PGR142G3424 Punica granatum HOM05D004010 ORTHO05D004995 7.8e-223 777.7 729 55.1
Carub.0005s0611 Capsella rubella HOM05D004010 ORTHO05D004995 1.6e-220 770.0 724 57.2
Lj2g0015656 Lotus japonicus HOM05D004010 ORTHO05D004995 2.8e-220 769.2 734 56.1
Nn4g22648 Nelumbo nucifera HOM05D004010 ORTHO05D004995 6.9e-219 764.6 728 55.8
BcaC06g30965 Brassica carinata HOM05D004010 ORTHO05D004995 9.0e-219 764.2 724 57.3
AL5G17090 Arabidopsis lyrata HOM05D004010 ORTHO05D004995 1.2e-218 763.8 724 57.3
BcaC06g33789 Brassica carinata HOM05D004010 ORTHO05D004995 2.0e-218 763.1 724 57.5
C07p36860 Brassica napus HOM05D004010 ORTHO05D004995 2.0e-218 763.1 724 57.5
BolC7t44198H Brassica oleracea HOM05D004010 ORTHO05D004995 2.0e-218 763.1 724 57.5
A06p40990 Brassica napus HOM05D004010 ORTHO05D004995 2.6e-218 762.7 723 57.3
Rhsim10G0018100 Rhododendron simsii HOM05D004010 ORTHO05D004995 2.6e-218 762.7 810 52.8
BraA06t27018Z Brassica rapa HOM05D004010 ORTHO05D004995 4.5e-218 761.9 723 57.3
TPR.G14085 Trifolium pratense HOM05D004010 ORTHO05D004995 8.4e-217 757.7 728 55.8
Eucgr.I01751 Eucalyptus grandis HOM05D004010 ORTHO05D004995 3.2e-216 755.7 729 56.4
vmacro05856 Vaccinium macrocarpon HOM05D004010 ORTHO05D004995 1.0e-214 750.7 778 53.7
CARHR149120 Cardamine hirsuta HOM05D004010 ORTHO05D004995 2.3e-214 749.6 724 56.8
Lalb_Chr24g0397171 Lupinus albus HOM05D004010 ORTHO05D004995 3.0e-214 749.2 729 55.0
AT3G27670 Arabidopsis thaliana HOM05D004010 ORTHO05D004995 5.1e-214 748.4 724 56.8
CsaV3_3G042730 Cucumis sativus L. HOM05D004010 ORTHO05D004995 3.3e-213 745.7 725 56.4
Ca_04154_v3 Cicer arietinum L. HOM05D004010 ORTHO05D004995 2.1e-212 743.0 728 54.4
Glyma.19G004700 Glycine max HOM05D004010 ORTHO05D004995 2.6e-210 736.1 733 55.0
ClCG10G013960 Citrullus lanatus HOM05D004010 ORTHO05D004995 9.9e-210 734.2 731 55.3
Sed0022234 Sechium edule HOM05D004010 ORTHO05D004995 2.9e-209 732.6 726 55.6
MELO3C009985.2 Cucumis melo HOM05D004010 ORTHO05D004995 4.9e-209 731.9 735 55.1
Phvul.004G009818 Phaseolus vulgaris HOM05D004010 ORTHO05D004995 1.1e-208 730.7 730 54.4
Solyc02g086500.3 Solanum lycopersicum HOM05D004010 ORTHO05D004995 4.2e-208 728.8 728 53.6
arahy.Tifrunner.gnm1.ann1.TK4K1F Arachis hypogaea HOM05D004010 ORTHO05D004995 1.2e-207 727.2 751 52.7
Sopen02g031220 Solanum pennellii HOM05D004010 ORTHO05D004995 3.5e-207 725.7 728 53.3
arahy.Tifrunner.gnm1.ann1.8M6LVM Arachis hypogaea HOM05D004010 ORTHO05D004995 1.3e-206 723.8 729 53.4
Aqoxy3G01154 Aquilegia oxysepala HOM05D004010 ORTHO05D004995 3.0e-206 722.6 721 54.0
Aa31LG2G5000 Aethionema arabicum HOM05D004010 ORTHO05D004995 3.9e-206 722.2 726 55.4
Medtr6g005010 Medicago truncatula HOM05D004010 ORTHO05D004995 8.7e-206 721.1 728 53.8
VMungo0464G1595 Vigna mungo HOM05D004010 ORTHO05D004995 1.5e-205 720.3 736 53.9
Lsat_1_v5_gn_4_183480 Lactuca sativa HOM05D004010 ORTHO05D004995 2.5e-205 719.5 742 53.9
Sabra16G0225000 Salix brachista HOM05D004010 ORTHO05D004995 1.8e-203 713.4 859 50.4
PSO478G2834 Papaver somniferum HOM05D004010 ORTHO05D004995 4.9e-201 705.3 732 53.4
Cc07_g01800 Coffea canephora HOM05D004010 ORTHO05D004995 2.5e-200 703.0 731 52.5
Sabra16G0225700 Salix brachista HOM05D004010 ORTHO05D004995 2.5e-200 703.0 900 48.3
Sc03g0007550 Simmondsia chinensis HOM05D004010 ORTHO05D004995 3.5e-199 699.1 722 53.5
PSO017G0470 Papaver somniferum HOM05D004010 ORTHO05D004995 2.5e-197 693.0 734 52.7
HanXRQChr09g0255111 Helianthus annuus HOM05D004010 ORTHO05D004995 4.3e-197 692.2 735 53.1
Gohir.D09G028100 Gossypium hirsutum HOM05D004010 ORTHO05D004995 6.9e-195 684.9 579 63.7
Actinidia36110 Actinidia chinensis HOM05D004010 ORTHO05D004995 2.0e-194 683.3 725 52.7
DCAR_001437 Daucus carota HOM05D004010 ORTHO05D004995 1.9e-192 676.8 730 52.5
Migut.H00083 Erythranthe guttata HOM05D004010 ORTHO05D004995 4.6e-191 672.2 746 50.1
ECA232G4079 Erigeron canadensis HOM05D004010 ORTHO05D004995 1.2e-183 647.5 728 50.0
FAN05G3555 Fragaria x ananassa HOM05D004010 ORTHO05D004995 1.8e-179 633.6 603 57.7
Hund06717 Selenicereus undatus HOM05D004010 ORTHO05D004995 2.9e-177 626.3 731 49.2
SalBow6G2090 Salvia bowleyana HOM05D004010 ORTHO05D004995 4.7e-175 619.0 816 44.9
Psat1g055320 Pisum sativum HOM05D004010 ORTHO05D004995 2.6e-165 586.6 597 53.1
ATR1158G023 Amborella trichopoda HOM05D004010 ORTHO05D004995 1.8e-163 580.5 727 44.6
AUR62034752 Chenopodium quinoa HOM05D004010 ORTHO05D004995 2.5e-160 570.1 734 45.9
EL10Ac4g08587 Beta vulgaris HOM05D004010 ORTHO05D004995 1.2e-159 567.8 732 46.4
SGA_v2.0_scaffold135G34899 Striga asiatica HOM05D004010 ORTHO05D004995 2.7e-154 550.1 798 41.5
AUR62043055 Chenopodium quinoa HOM05D004010 ORTHO05D004995 4.5e-154 549.3 724 45.4
Nitab4.5_0006802g0030 Nicotiana tabacum HOM05D004010 ORTHO05D004995 1.4e-147 527.7 754 41.9
Lju41A39G70 Lonicera japonica HOM05D004010 ORTHO05D004995 4.3e-144 516.2 576 52.8
Peaxi162Scf00129g01535 Petunia axillaris HOM05D004010 ORTHO05D004995 6.4e-140 502.3 613 49.4
Gohir.A09G028500 Gossypium hirsutum HOM05D004010 ORTHO05D004995 8.3e-140 501.9 470 59.4
CDE05G2835 Ceratophyllum demersum HOM05D004010 ORTHO05D004995 5.8e-125 452.6 632 42.4
Ciclev10017517m.g Citrus clementina HOM05D004010 ORTHO05D004995 4.9e-124 449.5 346 66.8
Ciclev10014033m.g Citrus clementina HOM05D004010 ORTHO05D004995 2.7e-122 443.7 376 62.2
CSS0029677 Camellia sinensis var. sinensis HOM05D004010 ORTHO05D004995 1.2e-117 428.3 362 61.6
Oeu006812.1 Olea europaea HOM05D004010 ORTHO05D004995 3.8e-116 423.3 444 52.7
Os01g0169500 Oryza sativa ssp. japonica HOM05D004010 ORTHO05D004995 3.1e-110 403.7 734 38.0
CSS0006564 Camellia sinensis var. sinensis HOM05D004010 ORTHO05D004995 2.1e-103 380.9 308 62.0
Zm00001eb123050 Zea mays HOM05D004010 ORTHO05D004995 4.8e-103 379.8 730 36.4
Phvul.004G009118 Phaseolus vulgaris HOM05D004010 ORTHO05D004995 1.3e-100 371.7 345 55.9
Hma1.2p1_1291F.1_g273520 Hydrangea macrophylla HOM05D004010 ORTHO05D004995 2.7e-90 337.4 409 49.6
Nitab4.5_0002682g0110 Nicotiana tabacum HOM05D004010 ORTHO05D004995 5.5e-83 313.2 377 48.3
Mapoly0001s0420 Marchantia polymorpha HOM05D004010 ORTHO05D004995 1.3e-81 308.5 737 31.2
MBI10_g32033_MAGBIO Magnolia biondii HOM05D004010 ORTHO05D004995 1.1e-78 298.9 237 63.3
SEGI_19034 Sequoiadendron giganteum HOM05D004010 ORTHO05D004995 1.5e-77 295.0 631 33.3
Atru.chr6.2368 Acer truncatum HOM05D004010 ORTHO05D004995 1.3e-76 292.0 211 68.2
Atru.chr6.2275 Acer truncatum HOM05D004010 ORTHO05D004995 2.9e-68 264.2 194 68.0
CAN.G473.4 Capsicum annuum HOM05D004010 ORTHO05D004995 1.0e-65 255.8 224 57.6
CSS0021155 Camellia sinensis var. sinensis HOM05D004010 ORTHO05D004995 3.3e-64 250.8 228 57.9
SMO361G0448 Selaginella moellendorffii HOM05D004010 ORTHO05D004995 2.2e-55 221.5 745 29.1
FAN05G1652 Fragaria x ananassa HOM05D004010 ORTHO05D004995 5.5e-51 206.8 210 54.3
MBI10_g38112_MAGBIO Magnolia biondii HOM05D004010 ORTHO05D004995 2.0e-48 198.4 285 45.6
MBI10_g46391_MAGBIO Magnolia biondii HOM05D004010 ORTHO05D004995 8.2e-47 193.0 282 41.5
Oeu006813.1 Olea europaea HOM05D004010 ORTHO05D004995 2.7e-45 188.0 120 70.0
Atru.chr6.2370 Acer truncatum HOM05D004010 ORTHO05D004995 1.3e-44 185.7 120 73.3
CAN.G473.5 Capsicum annuum HOM05D004010 ORTHO05D004995 2.7e-42 177.9 150 62.0
Actinidia15574 Actinidia chinensis HOM05D004010 ORTHO05D004995 1.0e-41 176.0 199 49.2
MBI10_g39276_MAGBIO Magnolia biondii HOM05D004010 ORTHO05D004995 5.2e-41 173.7 248 41.5
FvH4_6g51551 Fragaria vesca HOM05D004010 ORTHO05D004995 1.2e-40 172.6 132 62.9
FvH4_6g51542 Fragaria vesca HOM05D004010 ORTHO05D004995 4.8e-39 167.2 176 52.3
FAN14G2166 Fragaria x ananassa HOM05D004010 ORTHO05D004995 2.4e-38 164.9 152 57.9
FAN02G4182 Fragaria x ananassa HOM05D004010 ORTHO05D004995 2.9e-36 157.9 179 50.3
BcaB05g24178 Brassica carinata HOM05D004010 ORTHO05D027244 8.9e-33 146.4 178 45.5
Phvul.004G009127 Phaseolus vulgaris HOM05D004010 ORTHO05D004995 1.2e-32 146.0 134 59.7
CBR_g19447 Chara braunii HOM05D004010 ORTHO05D004995 1.2e-29 136.0 797 23.8
Ah.06g187170 Amaranthus hybridus HOM05D004010 ORTHO05D004995 2.7e-29 134.8 137 55.5
CDE05G1902 Ceratophyllum demersum HOM05D004010 ORTHO05D004995 1.2e-24 119.4 74 71.6
PGSC0003DMG400012627 Solanum tuberosum HOM05D004010 ORTHO05D004995 6.4e-23 113.6 81 60.5
Atru.chr6.2369 Acer truncatum HOM05D004010 ORTHO05D004995 1.4e-22 112.5 127 49.6
SEGI_32252 Sequoiadendron giganteum HOM05D004010 ORTHO05D004995 6.6e-20 103.6 81 59.3
BcaC02g11087 Brassica carinata HOM05D004010 ORTHO05D006095 8.3e-15 86.7 95 48.4
FvH4_6g51541 Fragaria vesca HOM05D004010 ORTHO05D004995 2.4e-14 85.1 53 79.2
TPR.G14087 Trifolium pratense HOM05D004010 ORTHO05D004995 5.4e-14 84.0 52 76.9
HPP92_004913 Vanilla planifolia HOM05D004010 ORTHO05D004995 1.7e-12 79.0 87 54.0
BcaB07g33347 Brassica carinata HOM05D004010 ORTHO05D004995 3.9e-12 77.8 76 57.9
C05p30190 Brassica napus HOM05D015522 ORTHO05D027244 1.1e-09 69.7 112 41.1
C05p30200 Brassica napus HOM05D015522 ORTHO05D027244 1.1e-09 69.7 110 41.8
TPR.G14699 Trifolium pratense HOM05D000127 ORTHO05D000243 1.2e-08 66.2 81 48.1
Hma1.2p1_1397F.1_g280710 Hydrangea macrophylla HOM05D004010 ORTHO05D036419 4.4e-08 64.3 54 53.7
Hma1.2p1_2269F.1_g318480 Hydrangea macrophylla HOM05D004010 ORTHO05D036419 4.4e-08 64.3 54 55.6
TPR.G14702 Trifolium pratense HOM05D000127 ORTHO05D000243 9.9e-08 63.2 76 50.0
Hma1.2p1_0078F.1_g040220 Hydrangea macrophylla HOM05D004010 ORTHO05D036419 4.9e-07 60.8 55 49.1


User provided reference genes

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