Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cpa.g.sc107.21 Carica papaya HOM05D000585 ORTHO05D001977 5.8e-66 254.2 140 100.0
CARHR275860 Cardamine hirsuta HOM05D000585 ORTHO05D001977 2.5e-21 105.9 127 59.8
Manes.06G145000 Manihot esculenta HOM05D000585 ORTHO05D001977 5.6e-21 104.8 127 61.4
AT5G62070 Arabidopsis thaliana HOM05D000585 ORTHO05D001977 7.4e-21 104.4 131 53.4
Carub.0008s2275 Capsella rubella HOM05D000585 ORTHO05D001977 1.6e-20 103.2 127 53.5
Gohir.D08G112800 Gossypium hirsutum HOM05D000585 ORTHO05D001977 4.8e-20 101.7 124 63.7
Gorai.004G121000 Gossypium raimondii HOM05D000585 ORTHO05D001977 4.8e-20 101.7 124 63.7
AL8G38850 Arabidopsis lyrata HOM05D000585 ORTHO05D001977 1.4e-19 100.1 131 56.5
COL.COLO4_14275 Corchorus olitorius HOM05D000585 ORTHO05D001977 4.0e-19 98.6 125 60.8
TWI39G0130 Tripterygium wilfordii HOM05D000585 ORTHO05D001977 9.0e-19 97.4 129 60.5
Duzib084G0926 Durio zibethinus HOM05D000585 ORTHO05D001977 2.6e-18 95.9 125 52.8
Sp6g35650 Schrenkiella parvula HOM05D000585 ORTHO05D001977 1.0e-17 94.0 129 54.3
VMungo0464G0488 Vigna mungo HOM05D000585 ORTHO05D001977 2.9e-17 92.4 139 56.1
Duzib068G0026 Durio zibethinus HOM05D000585 ORTHO05D001977 4.9e-17 91.7 124 54.0
Ca_26209_v3 Cicer arietinum L. HOM05D000585 ORTHO05D001977 8.4e-17 90.9 137 54.0
Phvul.004G120200 Phaseolus vulgaris HOM05D000585 ORTHO05D001977 1.4e-16 90.1 143 53.8
AL6G17490 Arabidopsis lyrata HOM05D000585 ORTHO05D001977 3.2e-16 89.0 125 56.8
AT5G07240 Arabidopsis thaliana HOM05D000585 ORTHO05D001977 1.2e-15 87.0 125 56.0
CANSAT21G1615 Cannabis sativa HOM05D000585 ORTHO05D001977 2.3e-14 82.8 132 51.5
CANSAT21G2530 Cannabis sativa HOM05D000585 ORTHO05D001977 2.3e-14 82.8 132 51.5
CARHR205900 Cardamine hirsuta HOM05D000585 ORTHO05D001977 2.3e-14 82.8 126 54.0
Medtr1g101330 Medicago truncatula HOM05D000585 ORTHO05D001977 2.3e-14 82.8 138 54.3
Atru.chr1.508 Acer truncatum HOM05D000585 ORTHO05D001977 3.0e-14 82.4 142 49.3
C03p03580 Brassica napus HOM05D000585 ORTHO05D001977 3.0e-14 82.4 125 53.6
BolC3t12898H Brassica oleracea HOM05D000585 ORTHO05D001977 3.0e-14 82.4 125 53.6
A03p03160 Brassica napus HOM05D000585 ORTHO05D001977 3.9e-14 82.0 125 54.4
BraA03t09672Z Brassica rapa HOM05D000585 ORTHO05D001977 3.9e-14 82.0 125 54.4
MELO3C006884.2 Cucumis melo HOM05D000585 ORTHO05D001977 3.9e-14 82.0 137 54.0
ClCG05G007880 Citrullus lanatus HOM05D000585 ORTHO05D001977 6.7e-14 81.3 137 51.1
Lalb_Chr21g0304971 Lupinus albus HOM05D000585 ORTHO05D001977 6.7e-14 81.3 126 47.6
CsaV3_3G016890 Cucumis sativus L. HOM05D000585 ORTHO05D001977 1.5e-13 80.1 137 52.6
Glyma.10G238300 Glycine max HOM05D000585 ORTHO05D001977 2.5e-13 79.3 131 49.6
Prupe.2G291100 Prunus persica HOM05D000585 ORTHO05D001977 3.3e-13 79.0 127 50.4
C09p69360 Brassica napus HOM05D000585 ORTHO05D001977 4.3e-13 78.6 129 50.4
BolC9t59680H Brassica oleracea HOM05D000585 ORTHO05D001977 4.3e-13 78.6 129 50.4
Sabra12G0104900 Salix brachista HOM05D000585 ORTHO05D001977 4.3e-13 78.6 129 57.4
BcaB01g06351 Brassica carinata HOM05D000585 ORTHO05D001977 5.7e-13 78.2 125 52.0
C03p64880 Brassica napus HOM05D000585 ORTHO05D001977 7.4e-13 77.8 129 53.5
BolC3t18750H Brassica oleracea HOM05D000585 ORTHO05D001977 7.4e-13 77.8 129 53.5
Aa31LG3G19130 Aethionema arabicum HOM05D000585 ORTHO05D001977 1.3e-12 77.0 139 51.8
A10p29000 Brassica napus HOM05D000585 ORTHO05D001977 1.3e-12 77.0 129 49.6
BraA10t44948Z Brassica rapa HOM05D000585 ORTHO05D001977 1.3e-12 77.0 129 49.6
Gohir.A09G179900 Gossypium hirsutum HOM05D000585 ORTHO05D001977 1.6e-12 76.6 125 52.8
Sed0012907 Sechium edule HOM05D000585 ORTHO05D001977 1.6e-12 76.6 135 51.9
TPR.G17390 Trifolium pratense HOM05D000585 ORTHO05D001977 1.6e-12 76.6 139 45.3
BcaC06g32459 Brassica carinata HOM05D000585 ORTHO05D001977 2.1e-12 76.3 129 48.8
Thecc.03G171900 Theobroma cacao HOM05D000585 ORTHO05D001977 2.1e-12 76.3 124 52.4
Manes.02G026600 Manihot esculenta HOM05D000585 ORTHO05D001977 2.8e-12 75.9 141 51.8
Glyma.16G196900 Glycine max HOM05D000585 ORTHO05D001977 4.8e-12 75.1 142 47.2
FAN06G0295 Fragaria x ananassa HOM05D000585 ORTHO05D001977 6.3e-12 74.7 126 52.4
LjContig00238g0013087 Lotus japonicus HOM05D000585 ORTHO05D001977 6.3e-12 74.7 132 48.5
MD07G1265200 Malus domestica HOM05D000585 ORTHO05D001977 6.3e-12 74.7 129 45.0
TWI14G0662 Tripterygium wilfordii HOM05D000585 ORTHO05D001977 1.1e-11 73.9 128 50.8
VMungo0720G1991 Vigna mungo HOM05D000585 ORTHO05D001977 1.4e-11 73.6 139 51.8
Psat6g199200 Pisum sativum HOM05D000585 ORTHO05D001977 2.4e-11 72.8 147 45.6
FAN03G0570 Fragaria x ananassa HOM05D000585 ORTHO05D001977 4.1e-11 72.0 136 50.0
Aa31LG11G1460 Aethionema arabicum HOM05D000585 ORTHO05D001977 6.9e-11 71.2 127 47.2
Haze_13741 Corylus avellana HOM05D000585 ORTHO05D001977 6.9e-11 71.2 124 52.4
Thhalv10013677m.g Eutrema salsugineum HOM05D000585 ORTHO05D001977 9.0e-11 70.9 129 48.8
AUR62021222 Chenopodium quinoa HOM05D000585 ORTHO05D001977 1.2e-10 70.5 74 73.0
Ciclev10019930m.g Citrus clementina HOM05D000585 ORTHO05D001977 1.5e-10 70.1 141 48.9
FAN10G2610 Fragaria x ananassa HOM05D000585 ORTHO05D001977 1.5e-10 70.1 125 52.0
Nitab4.5_0002107g0040 Nicotiana tabacum HOM05D000585 ORTHO05D001977 1.5e-10 70.1 138 49.3
Prupe.5G092600 Prunus persica HOM05D000585 ORTHO05D001977 2.0e-10 69.7 133 47.4
Psat0s1157g0080 Pisum sativum HOM05D000585 ORTHO05D001977 2.6e-10 69.3 162 38.9
Potri.012G139800 Populus trichocarpa HOM05D000585 ORTHO05D001977 2.6e-10 69.3 128 53.1
Sc19g0000030 Simmondsia chinensis HOM05D000585 ORTHO05D001977 2.6e-10 69.3 73 74.0
Sc19g0001650 Simmondsia chinensis HOM05D000585 ORTHO05D001977 2.6e-10 69.3 73 74.0
BraA06t25818Z Brassica rapa HOM05D000585 ORTHO05D001977 3.4e-10 68.9 130 49.2
RcHm_v2.0_Chr1g0376831 Rosa chinensis HOM05D000585 ORTHO05D001977 3.4e-10 68.9 124 52.4
AUR62016017 Chenopodium quinoa HOM05D000585 ORTHO05D001977 4.5e-10 68.6 74 71.6
Carub.0006s0620 Capsella rubella HOM05D000585 ORTHO05D001977 5.9e-10 68.2 126 50.0
Dinv35189 Davidia involucrata HOM05D000585 ORTHO05D001977 5.9e-10 68.2 142 47.9
Duzib205G1923 Durio zibethinus HOM05D000585 ORTHO05D001977 5.9e-10 68.2 161 44.7
Gohir.A03G017800 Gossypium hirsutum HOM05D000585 ORTHO05D001977 5.9e-10 68.2 133 45.9
Lj2g0021683 Lotus japonicus HOM05D000585 ORTHO05D001977 1.0e-09 67.4 147 48.3
arahy.Tifrunner.gnm1.ann1.CN8H2Q Arachis hypogaea HOM05D000585 ORTHO05D001977 2.2e-09 66.2 128 46.9
arahy.Tifrunner.gnm1.ann1.Z6JTIR Arachis hypogaea HOM05D000585 ORTHO05D001977 2.2e-09 66.2 128 46.9
Sed0025410 Sechium edule HOM05D000585 ORTHO05D001977 2.2e-09 66.2 124 52.4
HanXRQChr05g0141261 Helianthus annuus HOM05D000585 ORTHO05D001977 2.9e-09 65.9 123 52.0
Manes.01G065800 Manihot esculenta HOM05D000585 ORTHO05D001977 3.8e-09 65.5 126 42.1
Potri.001G108800 Populus trichocarpa HOM05D000585 ORTHO05D001977 3.8e-09 65.5 134 44.8
Solyc03g026110.4 Solanum lycopersicum HOM05D000585 ORTHO05D001977 5.0e-09 65.1 131 48.9
Ah.07g207400 Amaranthus hybridus HOM05D000585 ORTHO05D001977 6.5e-09 64.7 73 71.2
MSTRG.8756 Avicennia marina HOM05D000585 ORTHO05D001977 6.5e-09 64.7 116 53.4
Ca_10789_v3 Cicer arietinum L. HOM05D000585 ORTHO05D001977 6.5e-09 64.7 139 49.6
QL09p014750 Quercus lobata HOM05D000585 ORTHO05D001977 6.5e-09 64.7 129 52.7
Nitab4.5_0004843g0010 Nicotiana tabacum HOM05D000585 ORTHO05D001977 8.5e-09 64.3 138 47.8
CDE02G2005 Ceratophyllum demersum HOM05D000585 ORTHO05D001977 1.1e-08 63.9 129 39.5
FvH4_7g29094 Fragaria vesca HOM05D000585 ORTHO05D001977 1.1e-08 63.9 73 69.9
Thecc.03G272500 Theobroma cacao HOM05D000585 ORTHO05D001977 1.1e-08 63.9 79 68.4
Potri.003G122800 Populus trichocarpa HOM05D000585 ORTHO05D001977 1.4e-08 63.5 135 46.7
Actinidia32885 Actinidia chinensis HOM05D000585 ORTHO05D001977 1.9e-08 63.2 132 47.0
Glyma.20G156200 Glycine max HOM05D000585 ORTHO05D001977 1.9e-08 63.2 97 48.5
Sabra01G0082200 Salix brachista HOM05D000585 ORTHO05D001977 1.9e-08 63.2 144 45.8
SGA_v2.0_scaffold113G31765 Striga asiatica HOM05D000585 ORTHO05D001977 1.9e-08 63.2 108 54.6
GSVIVG01019823001 Vitis vinifera HOM05D000585 ORTHO05D001977 1.9e-08 63.2 140 43.6
CiPaw.04G066600 Carya illinoinensis HOM05D000585 ORTHO05D001977 2.5e-08 62.8 125 50.4
Lsat_1_v5_gn_8_6940 Lactuca sativa HOM05D000585 ORTHO05D001977 2.5e-08 62.8 121 48.8
Sopen03g004950 Solanum pennellii HOM05D000585 ORTHO05D001977 2.5e-08 62.8 131 41.2
Ah.13g068390 Amaranthus hybridus HOM05D000585 ORTHO05D001977 3.2e-08 62.4 72 69.4
Gohir.D03G153800 Gossypium hirsutum HOM05D000585 ORTHO05D001977 3.2e-08 62.4 134 45.5
Gorai.003G162000 Gossypium raimondii HOM05D000585 ORTHO05D001977 3.2e-08 62.4 134 45.5
SalBow2G2072 Salvia bowleyana HOM05D000585 ORTHO05D001977 4.2e-08 62.0 124 50.0
Actinidia02035 Actinidia chinensis HOM05D000585 ORTHO05D001977 5.5e-08 61.6 127 44.9
Duzib205G1132 Durio zibethinus HOM05D000585 ORTHO05D001977 5.5e-08 61.6 124 46.8
Oeu062767.1 Olea europaea HOM05D000585 ORTHO05D001977 5.5e-08 61.6 123 47.2
MD04G1065600 Malus domestica HOM05D000585 ORTHO05D001977 7.2e-08 61.2 113 49.6
CiPaw.03G103500 Carya illinoinensis HOM05D000585 ORTHO05D001977 9.3e-08 60.8 134 47.8
Peaxi162Scf00915g00123 Petunia axillaris HOM05D000585 ORTHO05D001977 9.3e-08 60.8 125 47.2
Actinidia34089 Actinidia chinensis HOM05D000585 ORTHO05D001977 1.6e-07 60.1 124 51.6
Glyma.09G143900 Glycine max HOM05D000585 ORTHO05D001977 1.6e-07 60.1 147 45.6
Oeu056229.1 Olea europaea HOM05D000585 ORTHO05D001977 1.6e-07 60.1 112 49.1
Sabra03G0086600 Salix brachista HOM05D000585 ORTHO05D001977 1.6e-07 60.1 135 44.4
Eucgr.E00539 Eucalyptus grandis HOM05D000585 ORTHO05D001977 3.6e-07 58.9 140 46.4
COL.COLO4_05259 Corchorus olitorius HOM05D000585 ORTHO05D001977 4.6e-07 58.5 165 38.2
Dinv28470 Davidia involucrata HOM05D000585 ORTHO05D001977 4.6e-07 58.5 142 44.4
Potri.015G142200 Populus trichocarpa HOM05D000585 ORTHO05D001977 4.6e-07 58.5 128 49.2
Actinidia03111 Actinidia chinensis HOM05D000585 ORTHO05D001977 6.1e-07 58.2 73 64.4
Duzib068G0564 Durio zibethinus HOM05D000585 ORTHO05D001977 7.9e-07 57.8 153 43.1
Glyma.09G225300 Glycine max HOM05D000156 ORTHO05D002715 7.9e-07 57.8 137 38.7
Glyma.12G011600 Glycine max HOM05D000156 ORTHO05D002715 7.9e-07 57.8 137 40.9
SalBow4G1325 Salvia bowleyana HOM05D000585 ORTHO05D001977 1.3e-06 57.0 127 49.6
Actinidia14529 Actinidia chinensis HOM05D000585 ORTHO05D001977 1.8e-06 56.6 128 46.1
BcaNung03243 Brassica carinata HOM05D000585 ORTHO05D001977 1.8e-06 56.6 130 36.9
Cc02_g03300 Coffea canephora HOM05D000585 ORTHO05D001977 1.8e-06 56.6 88 60.2
MBI04_g00309_MAGBIO Magnolia biondii HOM05D000585 ORTHO05D001977 1.8e-06 56.6 142 40.8
Sc07g0009570 Simmondsia chinensis HOM05D000585 ORTHO05D001977 1.8e-06 56.6 133 45.9
TWI73G1076 Tripterygium wilfordii HOM05D000585 ORTHO05D003019 1.8e-06 56.6 124 41.1
EL10Ac3g05721 Beta vulgaris HOM05D000585 ORTHO05D001977 2.3e-06 56.2 73 64.4
Migut.F00364 Erythranthe guttata HOM05D000585 ORTHO05D001977 2.3e-06 56.2 101 52.5
Gohir.A08G179001 Gossypium hirsutum HOM05D000585 ORTHO05D001977 2.3e-06 56.2 122 48.4
Phvul.011G014100 Phaseolus vulgaris HOM05D000156 ORTHO05D002715 3.0e-06 55.8 142 37.3
MBI12_g36509_MAGBIO Magnolia biondii HOM05D000585 ORTHO05D001977 3.9e-06 55.5 145 42.1
Rhsim03G0178200 Rhododendron simsii HOM05D000585 ORTHO05D001977 3.9e-06 55.5 104 51.9
Hund04718 Selenicereus undatus HOM05D000585 ORTHO05D001977 3.9e-06 55.5 72 65.3
PGSC0003DMG400014276 Solanum tuberosum HOM05D000585 ORTHO05D001977 5.1e-06 55.1 131 38.2
Lalb_Chr03g0034321 Lupinus albus HOM05D000585 ORTHO05D240007 8.7e-06 54.3 76 63.2
PGR042G0269 Punica granatum HOM05D000585 ORTHO05D001977 8.7e-06 54.3 112 51.8


User provided reference genes

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