Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cpa.g.sc107.111 Carica papaya HOM05D004727 ORTHO05D005788 3.1e-187 658.3 323 100.0
Prupe.2G301200 Prunus persica HOM05D004727 ORTHO05D005788 1.6e-103 380.2 343 59.2
MD01G1208600 Malus domestica HOM05D004727 ORTHO05D005788 2.6e-101 372.9 314 60.2
Manes.06G152500 Manihot esculenta HOM05D004727 ORTHO05D005788 3.1e-99 365.9 344 55.5
vmacro09814 Vaccinium macrocarpon HOM05D004727 ORTHO05D005788 4.5e-98 362.1 364 53.3
RcHm_v2.0_Chr1g0378381 Rosa chinensis HOM05D004727 ORTHO05D005788 3.8e-97 359.0 345 56.8
Duzib205G1763 Durio zibethinus HOM05D004727 ORTHO05D005788 6.5e-97 358.2 341 56.0
Potri.004G073700 Populus trichocarpa HOM05D004727 ORTHO05D005788 6.5e-97 358.2 339 55.8
CSS0032352 Camellia sinensis var. sinensis HOM05D004727 ORTHO05D005788 8.5e-97 357.8 339 55.8
FAN06G0456 Fragaria x ananassa HOM05D004727 ORTHO05D005788 2.5e-96 356.3 318 55.7
FAN06G4134 Fragaria x ananassa HOM05D004727 ORTHO05D005788 3.2e-96 355.9 318 55.7
Cc02_g02360 Coffea canephora HOM05D004727 ORTHO05D005788 1.2e-95 354.0 344 54.7
Potri.017G146200 Populus trichocarpa HOM05D004727 ORTHO05D005788 1.6e-95 353.6 343 53.6
Cfa016290 Carpinus fangiana HOM05D002238 ORTHO05D007272 4.7e-95 352.1 341 54.0
Oeu061663.1 Olea europaea HOM05D004727 ORTHO05D005788 8.0e-95 351.3 321 58.6
Atru.chr1.354 Acer truncatum HOM05D004727 ORTHO05D005788 1.0e-94 350.9 348 54.3
COL.COLO4_30213 Corchorus olitorius HOM05D004727 ORTHO05D005788 1.4e-94 350.5 342 54.7
FAN03G1377 Fragaria x ananassa HOM05D004727 ORTHO05D005788 6.8e-94 348.2 345 53.6
FvH4_7g30250 Fragaria vesca HOM05D004727 ORTHO05D005788 8.8e-94 347.8 314 55.4
Gohir.A08G085600 Gossypium hirsutum HOM05D004727 ORTHO05D005788 2.0e-93 346.7 311 57.6
Gohir.D08G109400 Gossypium hirsutum HOM05D004727 ORTHO05D005788 2.6e-93 346.3 311 57.2
GSVIVG01028857001 Vitis vinifera HOM05D004727 ORTHO05D005788 2.6e-93 346.3 311 58.5
FAN10G3700 Fragaria x ananassa HOM05D004727 ORTHO05D005788 2.8e-92 342.8 314 55.7
Gorai.004G117100 Gossypium raimondii HOM05D004727 ORTHO05D005788 2.8e-92 342.8 311 56.6
Thecc.03G184500 Theobroma cacao HOM05D004727 ORTHO05D005788 2.8e-92 342.8 342 54.1
Eucgr.A02736 Eucalyptus grandis HOM05D004727 ORTHO05D005788 6.3e-92 341.7 312 55.1
FAN10G1092 Fragaria x ananassa HOM05D004727 ORTHO05D005788 1.1e-91 340.9 345 52.5
PGR042G1629 Punica granatum HOM05D004727 ORTHO05D005788 1.1e-91 340.9 354 53.1
Rhsim09G0200700 Rhododendron simsii HOM05D004727 ORTHO05D005788 1.1e-91 340.9 400 49.2
Sabra04G0048400 Salix brachista HOM05D004727 ORTHO05D005788 2.4e-91 339.7 339 53.1
Hund11719 Selenicereus undatus HOM05D004727 ORTHO05D005788 1.2e-90 337.4 298 57.0
CsaV3_3G017470 Cucumis sativus L. HOM05D004727 ORTHO05D005788 2.0e-90 336.7 347 52.4
Lsat_1_v5_gn_9_56621 Lactuca sativa HOM05D004727 ORTHO05D005788 5.9e-90 335.1 319 56.7
Aqoxy7G00234 Aquilegia oxysepala HOM05D004727 ORTHO05D005788 1.0e-89 334.3 324 56.8
Phvul.004G107900 Phaseolus vulgaris HOM05D004727 ORTHO05D005788 1.7e-89 333.6 314 55.4
Haze_00047 Corylus avellana HOM05D004727 ORTHO05D005788 2.3e-89 333.2 370 48.9
Sopen03g003850 Solanum pennellii HOM05D004727 ORTHO05D005788 2.9e-89 332.8 346 53.8
Peaxi162Scf00444g00244 Petunia axillaris HOM05D004727 ORTHO05D005788 6.5e-89 331.6 343 54.2
Solyc03g007900.3 Solanum lycopersicum HOM05D004727 ORTHO05D005788 6.5e-89 331.6 346 53.8
Aa31sc163G30 Aethionema arabicum HOM05D004727 ORTHO05D005788 1.5e-88 330.5 316 55.4
Glyma.09G131600 Glycine max HOM05D004727 ORTHO05D005788 1.5e-88 330.5 314 55.4
Nn1g01641 Nelumbo nucifera HOM05D004727 ORTHO05D005788 2.5e-88 329.7 313 56.2
Sed0015096 Sechium edule HOM05D004727 ORTHO05D005788 3.2e-88 329.3 347 50.1
HanXRQChr12g0381081 Helianthus annuus HOM05D004727 ORTHO05D005788 4.2e-88 328.9 341 52.8
CARHR233170 Cardamine hirsuta HOM05D004727 ORTHO05D005788 5.5e-88 328.6 343 54.2
VMungo0464G1912 Vigna mungo HOM05D004727 ORTHO05D005788 7.2e-88 328.2 314 54.1
Sc25g0000700 Simmondsia chinensis HOM05D004727 ORTHO05D005788 1.2e-87 327.4 294 57.1
Gorai.007G013000 Gossypium raimondii HOM05D004727 ORTHO05D005788 2.1e-87 326.6 314 54.1
Gohir.D11G011600 Gossypium hirsutum HOM05D004727 ORTHO05D005788 2.8e-87 326.2 314 54.1
TPR.G33517 Trifolium pratense HOM05D004727 ORTHO05D005788 3.6e-87 325.9 310 54.2
Psat0ss29864g0280 Pisum sativum HOM05D004727 ORTHO05D005788 8.0e-87 324.7 349 51.6
Ca_23692_v3 Cicer arietinum L. HOM05D004727 ORTHO05D005788 1.0e-86 324.3 349 50.4
Lalb_Chr03g0034881 Lupinus albus HOM05D004727 ORTHO05D005788 1.8e-86 323.6 313 53.7
Gohir.A11G012400 Gossypium hirsutum HOM05D004727 ORTHO05D005788 4.0e-86 322.4 349 51.9
Nitab4.5_0008522g0010 Nicotiana tabacum HOM05D004727 ORTHO05D005788 4.0e-86 322.4 316 56.0
CAN.G126.29 Capsicum annuum HOM05D004727 ORTHO05D005788 5.2e-86 322.0 312 55.8
MSTRG.8711 Avicennia marina HOM05D004727 ORTHO05D005788 6.8e-86 321.6 344 51.2
Migut.F00289 Erythranthe guttata HOM05D004727 ORTHO05D005788 6.8e-86 321.6 296 56.4
Medtr0057s0080 Medicago truncatula HOM05D004727 ORTHO05D005788 1.5e-85 320.5 310 52.9
Sp7g23750 Schrenkiella parvula HOM05D004727 ORTHO05D005788 2.0e-85 320.1 335 52.2
Glyma.16G178900 Glycine max HOM05D004727 ORTHO05D005788 2.6e-85 319.7 314 54.1
Actinidia03138 Actinidia chinensis HOM05D004727 ORTHO05D005788 3.4e-85 319.3 323 53.9
Thhalv10025771m.g Eutrema salsugineum HOM05D004727 ORTHO05D005788 3.4e-85 319.3 330 52.4
Carub.0007s1524 Capsella rubella HOM05D004727 ORTHO05D005788 5.7e-85 318.5 345 52.8
ECA232G4896 Erigeron canadensis HOM05D004727 ORTHO05D005788 9.8e-85 317.8 309 56.6
AL7G27320 Arabidopsis lyrata HOM05D004727 ORTHO05D005788 1.7e-84 317.0 325 53.2
CDE11G0547 Ceratophyllum demersum HOM05D004727 ORTHO05D005788 3.7e-84 315.8 302 56.6
CANSAT21G0167 Cannabis sativa HOM05D004727 ORTHO05D005788 4.9e-84 315.5 336 50.6
CANSAT21G2173 Cannabis sativa HOM05D004727 ORTHO05D005788 4.9e-84 315.5 336 50.6
SGA_v2.0_scaffold60G21112 Striga asiatica HOM05D004727 ORTHO05D005788 6.3e-84 315.1 366 49.5
CiPaw.05G262100 Carya illinoinensis HOM05D004727 ORTHO05D005788 8.3e-84 314.7 257 62.3
Manes.06G152600 Manihot esculenta HOM05D004727 ORTHO05D005788 1.4e-83 313.9 333 52.3
ClCG05G008410 Citrullus lanatus HOM05D004727 ORTHO05D005788 1.8e-83 313.5 380 47.1
EL10Ac3g05418 Beta vulgaris HOM05D004727 ORTHO05D005788 2.4e-83 313.2 341 51.0
ATR0661G169 Amborella trichopoda HOM05D004727 ORTHO05D005788 3.1e-83 312.8 327 52.0
unitig_0.g2469 Utricularia gibba HOM05D004727 ORTHO05D005788 4.1e-83 312.4 310 52.9
Lalb_Chr19g0130641 Lupinus albus HOM05D004727 ORTHO05D005788 5.4e-83 312.0 305 56.4
AUR62021119 Chenopodium quinoa HOM05D004727 ORTHO05D005788 1.2e-82 310.8 334 49.7
BolC1t02052H Brassica oleracea HOM05D004727 ORTHO05D005788 2.7e-82 309.7 331 53.2
AUR62031423 Chenopodium quinoa HOM05D004727 ORTHO05D005788 2.7e-82 309.7 330 49.7
Nitab4.5_0000084g0450 Nicotiana tabacum HOM05D004727 ORTHO05D005788 3.5e-82 309.3 365 48.5
C01p21250 Brassica napus HOM05D004727 ORTHO05D005788 4.5e-82 308.9 330 53.3
Lj2g0018940 Lotus japonicus HOM05D004727 ORTHO05D005788 7.8e-82 308.1 307 53.1
PSO782G5178 Papaver somniferum HOM05D004727 ORTHO05D005788 6.6e-81 305.1 276 55.1
BraA01t01653Z Brassica rapa HOM05D004727 ORTHO05D005788 1.5e-80 303.9 327 52.6
PSO478G4818 Papaver somniferum HOM05D004727 ORTHO05D005788 1.9e-80 303.5 343 47.2
A01p16970 Brassica napus HOM05D004727 ORTHO05D005788 2.5e-80 303.1 324 52.5
HPP92_025470 Vanilla planifolia HOM05D004727 ORTHO05D005788 2.5e-80 303.1 298 54.4
Nitab4.5_0000084g0460 Nicotiana tabacum HOM05D004727 ORTHO05D005788 4.3e-80 302.4 310 52.9
Phvul.004G108600 Phaseolus vulgaris HOM05D004727 ORTHO05D005788 1.6e-79 300.4 301 54.8
Glyma.09G131900 Glycine max HOM05D004727 ORTHO05D005788 2.8e-79 299.7 304 54.3
unitig_52.g17730 Utricularia gibba HOM05D004727 ORTHO05D005788 2.8e-79 299.7 310 50.6
Hund04788 Selenicereus undatus HOM05D004727 ORTHO05D005788 3.6e-79 299.3 303 51.8
VMungo0464G2071 Vigna mungo HOM05D004727 ORTHO05D005788 3.6e-79 299.3 270 57.4
HanXRQChr05g0130171 Helianthus annuus HOM05D004727 ORTHO05D005788 6.1e-79 298.5 283 54.4
Medtr0057s0130 Medicago truncatula HOM05D004727 ORTHO05D005788 6.1e-79 298.5 303 53.5
CAN.G126.24 Capsicum annuum HOM05D004727 ORTHO05D005788 1.0e-78 297.7 301 52.5
SalBow4G1885 Salvia bowleyana HOM05D004727 ORTHO05D005788 1.4e-78 297.4 389 45.0
Glyma.09G131800 Glycine max HOM05D004727 ORTHO05D005788 4.0e-78 295.8 305 52.5
Nitab4.5_0008522g0030 Nicotiana tabacum HOM05D004727 ORTHO05D005788 4.0e-78 295.8 310 51.6
MELO3C006936.2 Cucumis melo HOM05D004727 ORTHO05D005788 8.9e-78 294.7 347 48.7
Duzib068G1006 Durio zibethinus HOM05D004727 ORTHO05D005788 7.5e-77 291.6 311 51.4
PGSC0003DMG400009500 Solanum tuberosum HOM05D004727 ORTHO05D005788 8.3e-76 288.1 301 51.8
AT4G25720 Arabidopsis thaliana HOM05D004727 ORTHO05D005788 1.1e-75 287.7 316 51.3
Solyc03g007920.4 Solanum lycopersicum HOM05D004727 ORTHO05D005788 2.0e-74 283.5 287 52.6
Lalb_Chr19g0130651 Lupinus albus HOM05D004727 ORTHO05D005788 1.0e-73 281.2 288 51.7
Sopen03g003870 Solanum pennellii HOM05D004727 ORTHO05D005788 1.3e-73 280.8 296 52.0
Os06g0103700 Oryza sativa ssp. japonica HOM05D004727 ORTHO05D005788 1.7e-73 280.4 284 51.8
Ah.06g181400 Amaranthus hybridus HOM05D004727 ORTHO05D005788 1.5e-72 277.3 308 49.0
Dinv35254 Davidia involucrata HOM05D004727 ORTHO05D005788 6.2e-71 271.9 224 61.6
SEGI_23205 Sequoiadendron giganteum HOM05D004727 ORTHO05D005788 1.2e-69 267.7 351 44.2
arahy.Tifrunner.gnm1.ann1.G1I5XM Arachis hypogaea HOM05D004727 ORTHO05D005788 8.3e-68 261.5 316 48.7
MSTRG.27085 Avicennia marina HOM05D004727 ORTHO05D005788 1.1e-67 261.2 253 55.7
HPP92_025401 Vanilla planifolia HOM05D004727 ORTHO05D005788 1.1e-67 261.2 253 55.7
EL10Ac4g07582 Beta vulgaris HOM05D004727 ORTHO05D005788 7.0e-67 258.5 388 40.2
QL09p012782 Quercus lobata HOM05D004727 ORTHO05D005788 2.1e-63 246.9 166 70.5
Pp3c10_5500 Physcomitrium patens HOM05D004727 ORTHO05D005788 3.7e-60 236.1 302 42.4
arahy.Tifrunner.gnm1.ann1.NE53A1 Arachis hypogaea HOM05D004727 ORTHO05D005788 4.1e-59 232.6 316 44.9
AUR62036451 Chenopodium quinoa HOM05D004727 ORTHO05D005788 9.2e-59 231.5 258 48.8
Mapoly0062s0028 Marchantia polymorpha HOM05D004727 ORTHO05D005788 2.3e-57 226.9 272 47.1
SMO351G0007 Selaginella moellendorffii HOM05D004727 ORTHO05D005788 6.6e-57 225.3 273 46.5
Ciclev10005858m.g Citrus clementina HOM05D004727 ORTHO05D005788 1.5e-56 224.2 211 55.5
CBR_g3311 Chara braunii HOM05D004727 ORTHO05D005788 5.6e-56 222.2 281 42.7
CBR_g3313 Chara braunii HOM05D004727 ORTHO05D005788 5.6e-56 222.2 281 42.7
AUR62017096 Chenopodium quinoa HOM05D004727 ORTHO05D005788 8.1e-55 218.4 221 50.7
FAN03G2629 Fragaria x ananassa HOM05D004727 ORTHO05D005788 3.1e-54 216.5 199 57.8
CBR_g727 Chara braunii HOM05D004727 ORTHO05D005788 6.8e-54 215.3 259 45.9
Actinidia31840 Actinidia chinensis HOM05D004727 ORTHO05D005788 2.6e-53 213.4 149 65.1
Ah.13g069160 Amaranthus hybridus HOM05D004727 ORTHO05D005788 9.2e-51 204.9 161 62.1
MBI12_g08716_MAGBIO Magnolia biondii HOM05D004727 ORTHO05D005788 2.3e-49 200.3 204 53.9
DCAR_024607 Daucus carota HOM05D004727 ORTHO05D005788 7.3e-48 195.3 169 59.8
Cre11.g476150 Chlamydomonas reinhardtii HOM05D004727 ORTHO05D005788 6.9e-46 188.7 270 39.3
Peaxi162Scf00444g00021 Petunia axillaris HOM05D004727 ORTHO05D005788 1.2e-45 188.0 230 46.5
Zm00001eb268480 Zea mays HOM05D004727 ORTHO05D005788 3.2e-43 179.9 221 46.6
DCAR_008880 Daucus carota HOM05D001628 ORTHO05D001568 1.0e-41 174.9 126 66.7
SMO231G0015 Selaginella moellendorffii HOM05D004727 ORTHO05D005788 2.5e-40 170.2 198 48.5
AUR62036407 Chenopodium quinoa HOM05D004727 ORTHO05D005788 1.8e-38 164.1 221 43.9
PRCOL_00002776 Prasinoderma coloniale HOM05D004727 ORTHO05D005788 7.6e-37 158.7 291 35.1
MCO01G501 Micromonas commoda HOM05D004727 ORTHO05D005788 1.7e-36 157.5 274 35.8
arahy.Tifrunner.gnm1.ann1.FZN7A9 Arachis hypogaea HOM05D004727 ORTHO05D005788 1.9e-32 144.1 123 55.3
SEGI_30519 Sequoiadendron giganteum HOM05D004727 ORTHO05D005788 5.6e-32 142.5 97 67.0
AagrBONN_evm.TU.Sc2ySwM_344.2696 Anthoceros agrestis HOM05D004727 ORTHO05D005788 1.2e-26 124.8 184 41.8
Actinidia31841 Actinidia chinensis HOM05D004727 ORTHO05D005788 8.7e-25 118.6 162 46.9
FAN01G2810 Fragaria x ananassa HOM05D000427 ORTHO05D000386 5.3e-22 109.4 181 38.1
EL10Ac4g07580 Beta vulgaris HOM05D004727 ORTHO05D005788 7.6e-21 105.5 140 44.3
SEGI_06548 Sequoiadendron giganteum HOM05D004727 ORTHO05D005788 7.6e-21 105.5 73 64.4
ECA233G3504 Erigeron canadensis HOM05D004727 ORTHO05D005788 2.9e-20 103.6 135 43.0
SHI13754 Sapria himalayana HOM05D004727 ORTHO05D005788 8.4e-20 102.1 102 47.1
QL09p012777 Quercus lobata HOM05D004727 ORTHO05D005788 1.4e-19 101.3 170 40.6
Ciclev10006767m.g Citrus clementina HOM05D004727 ORTHO05D005788 3.5e-18 96.7 86 57.0
Mapoly1114s0001 Marchantia polymorpha HOM05D004727 ORTHO05D005788 8.7e-17 92.0 97 48.5
MD14G1086700 Malus domestica HOM05D004727 ORTHO05D005788 1.6e-15 87.8 81 55.6
Ah.13g069170 Amaranthus hybridus HOM05D004727 ORTHO05D005788 8.2e-15 85.5 84 53.6
TWI39G0716 Tripterygium wilfordii HOM05D001943 ORTHO05D001969 1.8e-14 84.3 82 51.2
Medtr4g012780 Medicago truncatula HOM05D004727 ORTHO05D005788 7.9e-10 68.9 36 80.6
Hund04787 Selenicereus undatus HOM05D021542 ORTHO05D383482 3.9e-09 66.6 199 27.1


User provided reference genes

Program Settings