Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cpa.g.sc1068.2 Carica papaya HOM05D003076 ORTHO05D004355 7.3e-56 220.3 111 100.0
Actinidia39966 Actinidia chinensis HOM05D003076 ORTHO05D004355 1.0e-25 120.2 94 62.8
Ciclev10004416m.g Citrus clementina HOM05D003076 ORTHO05D004355 1.8e-25 119.4 86 72.1
Atru.chr4.1704 Acer truncatum HOM05D003076 ORTHO05D004355 1.1e-24 116.7 88 69.3
Dinv38235 Davidia involucrata HOM05D003076 ORTHO05D004355 1.9e-24 115.9 94 67.0
Prupe.1G008000 Prunus persica HOM05D003076 ORTHO05D004355 2.5e-24 115.5 94 66.0
Duzib212G0641 Durio zibethinus HOM05D003076 ORTHO05D004355 2.8e-23 112.1 94 63.8
Thecc.04G204200 Theobroma cacao HOM05D003076 ORTHO05D004355 2.8e-23 112.1 94 63.8
Peaxi162Scf00652g00217 Petunia axillaris HOM05D003076 ORTHO05D004355 1.4e-22 109.8 91 63.7
MD04G1008700 Malus domestica HOM05D003076 ORTHO05D004355 2.4e-22 109.0 94 62.8
EL10Ac3g07486 Beta vulgaris HOM05D003076 ORTHO05D004355 3.1e-22 108.6 86 64.0
TAR362G0760 Trochodendron aralioides HOM05D003076 ORTHO05D004355 3.1e-22 108.6 94 60.6
TAR633G0799 Trochodendron aralioides HOM05D003076 ORTHO05D004355 5.3e-22 107.8 94 60.6
Manes.03G147800 Manihot esculenta HOM05D003076 ORTHO05D004355 1.2e-21 106.7 91 61.5
Ah.13g078140 Amaranthus hybridus HOM05D001261 ORTHO05D001130 2.0e-21 105.9 94 59.6
CiPaw.01G121100 Carya illinoinensis HOM05D003076 ORTHO05D004355 2.6e-21 105.5 104 59.6
Sc13g0000180 Simmondsia chinensis HOM05D003076 ORTHO05D004355 2.6e-21 105.5 98 55.1
Nitab4.5_0000850g0060 Nicotiana tabacum HOM05D003076 ORTHO05D004355 7.6e-21 104.0 95 60.0
Nitab4.5_0000676g0140 Nicotiana tabacum HOM05D003076 ORTHO05D004355 1.3e-20 103.2 93 60.2
CAN.G767.39 Capsicum annuum HOM05D003076 ORTHO05D004355 2.9e-20 102.1 93 60.2
Oeu045308.1 Olea europaea HOM05D003076 ORTHO05D004355 3.8e-20 101.7 93 60.2
QL06p024679 Quercus lobata HOM05D003076 ORTHO05D004355 4.9e-20 101.3 105 55.2
Eucgr.H00053 Eucalyptus grandis HOM05D003076 ORTHO05D004355 8.4e-20 100.5 95 57.9
PGSC0003DMG401004568 Solanum tuberosum HOM05D003076 ORTHO05D004355 8.4e-20 100.5 92 59.8
Gohir.D09G198932 Gossypium hirsutum HOM05D003076 ORTHO05D004355 1.4e-19 99.8 94 55.3
Gorai.006G222500 Gossypium raimondii HOM05D003076 ORTHO05D004355 1.4e-19 99.8 94 55.3
Cfa014915 Carpinus fangiana HOM05D003076 ORTHO05D004355 2.5e-19 99.0 104 55.8
Oeu022111.1 Olea europaea HOM05D003076 ORTHO05D004355 4.2e-19 98.2 94 55.3
Hma1.2p1_0187F.1_g082140 Hydrangea macrophylla HOM05D003076 ORTHO05D004355 7.1e-19 97.4 97 57.7
Hund18993 Selenicereus undatus HOM05D003076 ORTHO05D004355 7.1e-19 97.4 87 58.6
Gohir.A09G205200 Gossypium hirsutum HOM05D003076 ORTHO05D004355 1.2e-18 96.7 94 54.3
Manes.03G147900 Manihot esculenta HOM05D003076 ORTHO05D004355 1.2e-18 96.7 88 56.8
CsaV3_3G010930 Cucumis sativus L. HOM05D003076 ORTHO05D004355 1.6e-18 96.3 91 60.4
Cc03_g07810 Coffea canephora HOM05D003076 ORTHO05D004355 2.1e-18 95.9 91 57.1
Haze_11609 Corylus avellana HOM05D003076 ORTHO05D004355 2.1e-18 95.9 115 50.4
MSTRG.4218 Avicennia marina HOM05D003076 ORTHO05D004355 3.5e-18 95.1 94 53.2
MELO3C006310.2 Cucumis melo HOM05D003912 ORTHO05D004409 3.5e-18 95.1 91 59.3
Sed0025050 Sechium edule HOM05D003076 ORTHO05D004355 7.9e-18 94.0 91 58.2
AUR62018595 Chenopodium quinoa HOM05D003076 ORTHO05D004355 1.0e-17 93.6 86 58.1
ClCG05G003300 Citrullus lanatus HOM05D003076 ORTHO05D004355 1.0e-17 93.6 91 59.3
AUR62020823 Chenopodium quinoa HOM05D003076 ORTHO05D004355 2.3e-17 92.4 86 58.1
Migut.G00682 Erythranthe guttata HOM05D003076 ORTHO05D004355 2.3e-17 92.4 84 58.3
Lj6C557T2 Lonicera japonica HOM05D003076 ORTHO05D004355 2.3e-17 92.4 82 61.0
Lsat_1_v5_gn_2_44920 Lactuca sativa HOM05D003076 ORTHO05D004355 3.0e-17 92.0 86 58.1
Sabra17G0048900 Salix brachista HOM05D003076 ORTHO05D004355 3.0e-17 92.0 96 52.1
SalBow8G0497 Salvia bowleyana HOM05D003076 ORTHO05D004355 3.0e-17 92.0 101 48.5
Gohir.A03G094400 Gossypium hirsutum HOM05D003076 ORTHO05D004355 5.1e-17 91.3 94 55.3
Sabra17G0046700 Salix brachista HOM05D003076 ORTHO05D004355 5.1e-17 91.3 94 52.1
ATR1145G039 Amborella trichopoda HOM05D003076 ORTHO05D004355 1.1e-16 90.1 80 58.8
Gohir.D02G123700 Gossypium hirsutum HOM05D003076 ORTHO05D004355 1.1e-16 90.1 90 56.7
HanXRQChr14g0435971 Helianthus annuus HOM05D003076 ORTHO05D004355 1.1e-16 90.1 93 55.9
vmacro15529 Vaccinium macrocarpon HOM05D003076 ORTHO05D004355 1.6e-15 86.3 89 53.9
Gorai.005G130500 Gossypium raimondii HOM05D003076 ORTHO05D004355 2.8e-15 85.5 94 54.3
CDE05G1872 Ceratophyllum demersum HOM05D003076 ORTHO05D004355 3.7e-15 85.1 81 54.3
FvH4_4g15740 Fragaria vesca HOM05D003076 ORTHO05D004355 6.3e-15 84.3 70 61.4
FAN07G2438 Fragaria x ananassa HOM05D003076 ORTHO05D004355 6.3e-15 84.3 70 61.4
Gohir.D02G030500 Gossypium hirsutum HOM05D003076 ORTHO05D004355 1.8e-14 82.8 86 51.2
HanXRQChr15g0484311 Helianthus annuus HOM05D003076 ORTHO05D004355 2.4e-14 82.4 87 54.0
Gohir.A02G023200 Gossypium hirsutum HOM05D003076 ORTHO05D004355 3.1e-14 82.0 86 50.0
Solyc12g098380.3 Solanum lycopersicum HOM05D003076 ORTHO05D004355 3.1e-14 82.0 90 53.3
Sopen12g033160 Solanum pennellii HOM05D003076 ORTHO05D004355 3.1e-14 82.0 90 53.3
THA.LOC104808713 Tarenaya hassleriana HOM05D003076 ORTHO05D004355 4.1e-14 81.6 91 52.7
DCAR_026612 Daucus carota HOM05D003076 ORTHO05D004355 1.2e-13 80.1 87 52.9
Gorai.005G033800 Gossypium raimondii HOM05D003076 ORTHO05D004355 1.2e-13 80.1 86 50.0
RcHm_v2.0_Chr4g0415341 Rosa chinensis HOM05D003076 ORTHO05D004355 1.2e-13 80.1 70 58.6
Sed0024186 Sechium edule HOM05D003076 ORTHO05D004355 2.0e-13 79.3 88 53.4
Aqoxy2G03870 Aquilegia oxysepala HOM05D003076 ORTHO05D004355 4.5e-13 78.2 86 51.2
SGA_v2.0_scaffold300G47761 Striga asiatica HOM05D003076 ORTHO05D004355 5.9e-13 77.8 78 51.3
Manes.15G053700 Manihot esculenta HOM05D003076 ORTHO05D004355 3.8e-12 75.1 94 47.9
Lj3A413T40 Lonicera japonica HOM05D003076 ORTHO05D004355 1.9e-11 72.8 91 45.1
CSS0027357 Camellia sinensis var. sinensis HOM05D003076 ORTHO05D004355 5.5e-11 71.2 87 47.1
HPP92_024669 Vanilla planifolia HOM05D003076 ORTHO05D004355 9.4e-11 70.5 92 40.2
CSS0040323 Camellia sinensis var. sinensis HOM05D003076 ORTHO05D004355 1.6e-10 69.7 87 47.1
Potri.002G242900 Populus trichocarpa HOM05D003076 ORTHO05D004355 1.6e-10 69.7 86 51.2
Manes.13G047500 Manihot esculenta HOM05D003076 ORTHO05D004355 2.1e-10 69.3 86 47.7
ECA238G0219 Erigeron canadensis HOM05D003076 ORTHO05D004355 2.7e-10 68.9 87 47.1
COL.COLO4_15685 Corchorus olitorius HOM05D003076 ORTHO05D004355 1.8e-09 66.2 86 45.3
Manes.12G042050 Manihot esculenta HOM05D003076 ORTHO05D004355 2.3e-09 65.9 87 46.0
Manes.12G045100 Manihot esculenta HOM05D003076 ORTHO05D004355 2.3e-09 65.9 87 46.0
Aa31LG9G4010 Aethionema arabicum HOM05D003076 ORTHO05D004355 8.8e-09 63.9 53 54.7
PGR044G0349 Punica granatum HOM05D003076 ORTHO05D004355 8.8e-09 63.9 83 43.4
Potri.017G055100 Populus trichocarpa HOM05D003076 ORTHO05D004355 1.1e-08 63.5 92 41.3
Glyma.16G093400 Glycine max HOM05D003076 ORTHO05D004355 2.5e-08 62.4 94 43.6
Thecc.01G224900 Theobroma cacao HOM05D003076 ORTHO05D004355 3.3e-08 62.0 86 44.2
AT4G13630 Arabidopsis thaliana HOM05D003076 ORTHO05D004355 7.4e-08 60.8 97 39.2
Cpa.g.sc8.149 Carica papaya HOM05D003076 ORTHO05D004355 9.7e-08 60.5 69 49.3
BcaB03g16063 Brassica carinata HOM05D003076 ORTHO05D004355 1.3e-07 60.1 80 43.8
BraA04t16545Z Brassica rapa HOM05D003076 ORTHO05D004355 1.7e-07 59.7 47 63.8
AL7G42940 Arabidopsis lyrata HOM05D003076 ORTHO05D004355 2.2e-07 59.3 72 45.8
CiPaw.03G148900 Carya illinoinensis HOM05D003076 ORTHO05D004355 2.2e-07 59.3 94 42.6
TPR.G38596 Trifolium pratense HOM05D003076 ORTHO05D004355 2.2e-07 59.3 80 45.0
Carub.0007s2890 Capsella rubella HOM05D003076 ORTHO05D004355 3.7e-07 58.5 47 59.6
BolC4t25806H Brassica oleracea HOM05D003076 ORTHO05D004355 6.3e-07 57.8 47 59.6
CARHR219340 Cardamine hirsuta HOM05D003076 ORTHO05D004355 6.3e-07 57.8 47 59.6
Medtr4g011550 Medicago truncatula HOM05D003076 ORTHO05D004355 6.3e-07 57.8 88 43.2
TWI18G1051 Tripterygium wilfordii HOM05D003076 ORTHO05D004355 6.3e-07 57.8 82 42.7
MD10G1163900 Malus domestica HOM05D003076 ORTHO05D004355 8.2e-07 57.4 65 50.8
Sp7g11340 Schrenkiella parvula HOM05D003076 ORTHO05D004355 8.2e-07 57.4 59 50.8
BcaC02g09401 Brassica carinata HOM05D003076 ORTHO05D004355 1.4e-06 56.6 47 59.6
Duzib133G0416 Durio zibethinus HOM05D003076 ORTHO05D004355 1.4e-06 56.6 86 45.3
Cfa002575 Carpinus fangiana HOM05D003076 ORTHO05D004355 1.8e-06 56.2 69 47.8
Duzib138G1925 Durio zibethinus HOM05D003076 ORTHO05D004355 1.8e-06 56.2 86 44.2
Psat7g254360 Pisum sativum HOM05D003076 ORTHO05D004355 1.8e-06 56.2 86 41.9
Lj3g0010463 Lotus japonicus HOM05D003076 ORTHO05D004355 3.1e-06 55.5 80 43.8
Haze_24807 Corylus avellana HOM05D003076 ORTHO05D004355 5.3e-06 54.7 69 46.4
Thhalv10024808m.g Eutrema salsugineum HOM05D003076 ORTHO05D004355 6.9e-06 54.3 47 53.2
HPP92_009909 Vanilla planifolia HOM05D003076 ORTHO05D004355 6.9e-06 54.3 68 41.2
Sabra02G0185000 Salix brachista HOM05D003076 ORTHO05D004355 9.1e-06 53.9 85 44.7


User provided reference genes

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