Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cpa.g.sc106.79 Carica papaya HOM05D006481 ORTHO05D008160 0.0e+00 1658.3 1002 100.0
Manes.10G058310 Manihot esculenta HOM05D006481 ORTHO05D008160 1.1e-187 661.4 1007 50.2
Cfa004657 Carpinus fangiana HOM05D006481 ORTHO05D008160 7.5e-176 622.1 1092 44.6
TWI14G1262 Tripterygium wilfordii HOM05D006481 ORTHO05D008160 6.0e-173 612.5 1003 47.3
Haze_10252 Corylus avellana HOM05D006481 ORTHO05D008160 1.5e-171 607.8 1091 44.7
Prupe.8G140600 Prunus persica HOM05D006481 ORTHO05D008160 1.9e-171 607.4 1021 48.1
CiPaw.05G015400 Carya illinoinensis HOM05D006481 ORTHO05D008160 5.2e-169 599.4 1033 43.1
Dinv15788 Davidia involucrata HOM05D006481 ORTHO05D008160 1.2e-165 588.2 1023 47.2
FvH4_2g03900 Fragaria vesca HOM05D006481 ORTHO05D008160 3.0e-164 583.6 1003 47.6
QL11p031947 Quercus lobata HOM05D006481 ORTHO05D008160 3.9e-164 583.2 1022 46.9
Thecc.02G113600 Theobroma cacao HOM05D006481 ORTHO05D008160 5.1e-164 582.8 1012 47.9
FAN27G2785 Fragaria x ananassa HOM05D006481 ORTHO05D008160 5.6e-163 579.3 1005 49.7
FAN15G2146 Fragaria x ananassa HOM05D006481 ORTHO05D008160 6.2e-162 575.9 1000 49.4
COL.COLO4_32543 Corchorus olitorius HOM05D006481 ORTHO05D008160 1.4e-161 574.7 1000 45.7
Dinv42219 Davidia involucrata HOM05D006481 ORTHO05D008160 1.5e-160 571.2 1029 47.5
RcHm_v2.0_Chr6g0252931 Rosa chinensis HOM05D006481 ORTHO05D008160 2.0e-160 570.9 1004 47.2
Gohir.D12G020600 Gossypium hirsutum HOM05D006481 ORTHO05D008160 5.4e-158 562.8 1008 44.6
Duzib132G1015 Durio zibethinus HOM05D006481 ORTHO05D008160 6.0e-157 559.3 1012 47.3
MD05G1096200 Malus domestica HOM05D006481 ORTHO05D008160 9.3e-150 535.4 1069 46.2
TAR376G0872 Trochodendron aralioides HOM05D006481 ORTHO05D008160 4.3e-147 526.6 1016 42.0
Gohir.A12G020400 Gossypium hirsutum HOM05D006481 ORTHO05D008160 3.6e-146 523.5 1064 41.5
Potri.009G090900 Populus trichocarpa HOM05D006481 ORTHO05D008160 4.0e-145 520.0 1009 43.0
Potri.001G296700 Populus trichocarpa HOM05D006481 ORTHO05D008160 3.4e-144 516.9 1007 43.0
Gorai.008G021000 Gossypium raimondii HOM05D006481 ORTHO05D008160 6.4e-143 512.7 1014 42.2
CSS0020952 Camellia sinensis var. sinensis HOM05D006481 ORTHO05D008160 2.4e-142 510.8 1039 41.7
Actinidia34372 Actinidia chinensis HOM05D006481 ORTHO05D008160 6.7e-140 502.7 1013 41.4
CSS0029586 Camellia sinensis var. sinensis HOM05D006481 ORTHO05D008160 4.3e-139 500.0 1003 42.3
Ciclev10027845m.g Citrus clementina HOM05D006481 ORTHO05D008160 9.6e-139 498.8 958 40.5
Sopen01g049510 Solanum pennellii HOM05D006481 ORTHO05D008160 5.8e-136 489.6 1032 43.1
Solyc01g107260.4 Solanum lycopersicum HOM05D006481 ORTHO05D008160 1.3e-135 488.4 1035 43.4
DCAR_021965 Daucus carota HOM05D006481 ORTHO05D008160 1.9e-134 484.6 1046 41.6
Sed0008985 Sechium edule HOM05D006481 ORTHO05D008160 2.1e-133 481.1 1018 41.3
MELO3C017986.2 Cucumis melo HOM05D006481 ORTHO05D008160 2.4e-129 467.6 590 51.5
Nitab4.5_0001105g0200 Nicotiana tabacum HOM05D006481 ORTHO05D008160 9.0e-129 465.7 992 42.1
CsaV3_4G000490 Cucumis sativus L. HOM05D006481 ORTHO05D008160 1.5e-128 464.9 595 50.8
Lj5g0022753 Lotus japonicus HOM05D006481 ORTHO05D008160 1.0e-127 462.2 985 41.4
Medtr1g106795 Medicago truncatula HOM05D006481 ORTHO05D008160 2.2e-127 461.1 1004 41.0
arahy.Tifrunner.gnm1.ann1.RQ9967 Arachis hypogaea HOM05D006481 ORTHO05D008160 1.9e-126 458.0 971 42.2
CAN.G606.42 Capsicum annuum HOM05D006481 ORTHO05D008160 9.3e-126 455.7 1096 38.7
Sabra09G0070200 Salix brachista HOM05D006481 ORTHO05D008160 1.2e-125 455.3 453 59.8
Sabra16G0185800 Salix brachista HOM05D006481 ORTHO05D008160 3.0e-124 450.7 516 55.0
PSO675G3182 Papaver somniferum HOM05D006481 ORTHO05D008160 8.7e-124 449.1 1016 41.5
Ca_11047_v3 Cicer arietinum L. HOM05D006481 ORTHO05D008160 1.6e-122 444.9 996 41.6
arahy.Tifrunner.gnm1.ann1.IH69Y8 Arachis hypogaea HOM05D006481 ORTHO05D008160 3.7e-122 443.7 965 42.1
Nitab4.5_0004685g0050 Nicotiana tabacum HOM05D006481 ORTHO05D008160 8.2e-122 442.6 1016 41.0
Atru.BG.62.p Acer truncatum HOM05D006481 ORTHO05D008160 1.4e-121 441.8 492 56.1
PSO541G1903 Papaver somniferum HOM05D006481 ORTHO05D008160 3.4e-120 437.2 1005 42.2
Glyma.20G132200 Glycine max HOM05D006481 ORTHO05D008160 4.5e-120 436.8 443 60.5
Lalb_Chr02g0145111 Lupinus albus HOM05D006481 ORTHO05D008160 4.5e-120 436.8 1006 40.4
vmacro01976 Vaccinium macrocarpon HOM05D006481 ORTHO05D008160 1.1e-118 432.2 448 58.9
GSVIVG01037865001 Vitis vinifera HOM05D006481 ORTHO05D008160 3.6e-117 427.2 530 50.4
TPR.G27130 Trifolium pratense HOM05D006481 ORTHO05D008160 2.5e-115 421.0 1001 41.2
Aa31LG10G4220 Aethionema arabicum HOM05D006481 ORTHO05D008160 9.7e-115 419.1 567 49.9
Lj5A217G88 Lonicera japonica HOM05D006481 ORTHO05D008160 9.7e-115 419.1 458 55.5
THA.LOC104825834 Tarenaya hassleriana HOM05D006481 ORTHO05D008160 9.7e-115 419.1 1014 38.8
MSTRG.16692 Avicennia marina HOM05D006481 ORTHO05D008160 2.8e-114 417.5 1016 36.7
Cc02_g30880 Coffea canephora HOM05D006481 ORTHO05D008160 1.1e-113 415.6 1061 37.7
ClCG10G010570 Citrullus lanatus HOM05D006481 ORTHO05D008160 5.9e-112 409.8 613 46.5
Aqoxy6G02732 Aquilegia oxysepala HOM05D006481 ORTHO05D008160 8.5e-111 406.0 530 51.1
Psat6g216240 Pisum sativum HOM05D006481 ORTHO05D008160 1.4e-110 405.2 452 56.2
Phvul.007G043300 Phaseolus vulgaris HOM05D006481 ORTHO05D008160 4.7e-109 400.2 1062 38.2
AUR62031332 Chenopodium quinoa HOM05D006481 ORTHO05D008160 7.4e-107 392.9 519 50.5
Thhalv10011233m.g Eutrema salsugineum HOM05D006481 ORTHO05D008160 7.4e-107 392.9 441 55.6
unitig_744.g24217 Utricularia gibba HOM05D006481 ORTHO05D008160 2.8e-106 391.0 607 43.5
AUR62027350 Chenopodium quinoa HOM05D006481 ORTHO05D008160 4.8e-106 390.2 520 50.4
VMungo0720G0067 Vigna mungo HOM05D006481 ORTHO05D008160 8.2e-106 389.4 989 39.7
EL10Ac8g19363 Beta vulgaris HOM05D006481 ORTHO05D008160 6.9e-105 386.3 593 45.5
AT1G49870 Arabidopsis thaliana HOM05D006481 ORTHO05D008160 2.0e-104 384.8 452 54.2
Sp1g36750 Schrenkiella parvula HOM05D006481 ORTHO05D008160 3.4e-104 384.0 451 53.9
AL1G57410 Arabidopsis lyrata HOM05D006481 ORTHO05D008160 1.0e-103 382.5 446 55.4
Ah.14g085520 Amaranthus hybridus HOM05D006481 ORTHO05D008160 1.3e-103 382.1 997 37.6
Carub.0001s3908 Capsella rubella HOM05D006481 ORTHO05D008160 3.8e-103 380.6 611 44.2
RhsimUnG0125900 Rhododendron simsii HOM05D006481 ORTHO05D008160 3.8e-103 380.6 1081 34.6
PGSC0003DMG400025848 Solanum tuberosum HOM05D006481 ORTHO05D008160 2.5e-102 377.9 1019 38.3
A08p03520 Brassica napus HOM05D006481 ORTHO05D008160 4.2e-102 377.1 453 53.6
BolC8t47171H Brassica oleracea HOM05D006481 ORTHO05D008160 6.1e-101 373.2 448 54.0
Rhsim11G0154700 Rhododendron simsii HOM05D006481 ORTHO05D008160 5.2e-100 370.2 1044 33.6
BcaB04g17289 Brassica carinata HOM05D006481 ORTHO05D008160 6.7e-100 369.8 445 53.5
Oeu021369.1 Olea europaea HOM05D006481 ORTHO05D008160 5.7e-99 366.7 998 34.6
Migut.B00421 Erythranthe guttata HOM05D006481 ORTHO05D008160 2.2e-98 364.8 575 45.6
ECA234G0568 Erigeron canadensis HOM05D006481 ORTHO05D008160 6.3e-98 363.2 454 49.6
BraA08t32385Z Brassica rapa HOM05D006481 ORTHO05D008160 1.4e-97 362.1 451 52.5
SalBow6G0734 Salvia bowleyana HOM05D006481 ORTHO05D008160 2.4e-97 361.3 967 38.8
C08p03680 Brassica napus HOM05D006481 ORTHO05D008160 1.7e-95 355.1 449 52.8
TAR628G0609 Trochodendron aralioides HOM05D006481 ORTHO05D008160 5.0e-95 353.6 518 45.9
CARHR039920 Cardamine hirsuta HOM05D006481 ORTHO05D008160 1.4e-92 345.5 438 52.1
SGA_v2.0_scaffold225G43011 Striga asiatica HOM05D006481 ORTHO05D008160 1.1e-89 335.9 445 49.0
HanXRQChr16g0514441 Helianthus annuus HOM05D006481 ORTHO05D008160 4.1e-89 334.0 411 51.1
Lsat_1_v5_gn_5_114361 Lactuca sativa HOM05D006481 ORTHO05D008160 4.5e-88 330.5 497 44.1
Peaxi162Scf00016g02732 Petunia axillaris HOM05D006481 ORTHO05D008160 4.5e-88 330.5 950 37.9
Eucgr.I01079 Eucalyptus grandis HOM05D006481 ORTHO05D008160 7.7e-88 329.7 886 39.2
ATR0030G005 Amborella trichopoda HOM05D006481 ORTHO05D008160 1.2e-85 322.4 471 47.8
Os03g0604600 Oryza sativa ssp. japonica HOM05D006481 ORTHO05D008160 3.5e-80 304.3 505 43.8
HPP92_017760 Vanilla planifolia HOM05D006481 ORTHO05D008160 3.3e-78 297.7 430 45.1
Zm00001eb050130 Zea mays HOM05D006481 ORTHO05D008160 5.5e-78 297.0 489 43.1
SEGI_11188 Sequoiadendron giganteum HOM05D006481 ORTHO05D008160 1.9e-54 218.8 335 46.0
SEGI_37018 Sequoiadendron giganteum HOM05D006481 ORTHO05D008160 1.9e-54 218.8 335 46.0
FAN20G1292 Fragaria x ananassa HOM05D006481 ORTHO05D008160 5.2e-52 210.7 703 41.3
CDE04G1272 Ceratophyllum demersum HOM05D006481 ORTHO05D008160 5.6e-46 190.7 349 40.4
Sc14g0002570 Simmondsia chinensis HOM05D006481 ORTHO05D008160 1.4e-44 186.0 259 48.3
MD10G1102400 Malus domestica HOM05D006481 ORTHO05D008160 7.6e-43 180.3 149 66.4
SEGI_25924 Sequoiadendron giganteum HOM05D006481 ORTHO05D008160 6.4e-42 177.2 317 43.5
Pp3c18_18840 Physcomitrium patens HOM05D006481 ORTHO05D008160 2.2e-34 152.1 317 39.4
SMO196G0099 Selaginella moellendorffii HOM05D006481 ORTHO05D008160 1.1e-33 149.8 293 39.6
SHI05066 Sapria himalayana HOM05D006481 ORTHO05D008160 2.5e-30 138.7 132 59.8
MD10G1102500 Malus domestica HOM05D006481 ORTHO05D008160 2.3e-23 115.5 154 48.7
EL10Ac6g13964 Beta vulgaris HOM05D006481 ORTHO05D008160 7.4e-22 110.5 215 38.6
CBR_g49330 Chara braunii HOM05D006481 ORTHO05D008160 9.6e-22 110.2 163 44.2
TAR628G0206 Trochodendron aralioides HOM05D006481 ORTHO05D008160 1.6e-21 109.4 278 46.0
Atru.chr5.2411 Acer truncatum HOM05D006481 ORTHO05D008160 3.4e-19 101.7 94 55.3
RcHm_v2.0_Chr6g0252961 Rosa chinensis HOM05D006481 ORTHO05D008160 2.5e-17 95.5 103 50.5
Hma1.2p1_1361F.1_g278150 Hydrangea macrophylla HOM05D006481 ORTHO05D008160 7.1e-17 94.0 202 38.1
Duzib052G0964 Durio zibethinus HOM05D006481 ORTHO05D008160 1.1e-14 86.7 147 44.2
Hma1.2p1_0000F.1_g001000 Hydrangea macrophylla HOM05D006481 ORTHO05D008160 1.5e-14 86.3 108 50.9
RcHm_v2.0_Chr4g0423461 Rosa chinensis HOM05D006481 ORTHO05D000001 2.9e-10 72.0 100 45.0
Oeu039499.1 Olea europaea HOM05D006481 ORTHO05D008160 3.2e-09 68.6 127 49.6
SHI05065 Sapria himalayana HOM05D006481 ORTHO05D008160 3.2e-09 68.6 125 35.2
Hma1.2p1_0883F.1_g232290 Hydrangea macrophylla HOM05D006481 ORTHO05D008160 3.5e-08 65.1 51 68.6
BcaC05g27423 Brassica carinata HOM05D006481 ORTHO05D008160 6.0e-08 64.3 56 58.9
SGA_v2.0_scaffold4001G54416 Striga asiatica HOM05D006481 ORTHO05D008160 6.0e-08 64.3 214 29.4


User provided reference genes

Program Settings