Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cpa.g.sc106.58 Carica papaya HOM05D004505 ORTHO05D005249 1.8e-122 442.6 225 100.0
Thecc.02G115800 Theobroma cacao HOM05D004505 ORTHO05D005249 4.1e-82 308.5 228 75.4
COL.COLO4_32526 Corchorus olitorius HOM05D004505 ORTHO05D005249 2.1e-81 306.2 227 73.1
Duzib052G0917 Durio zibethinus HOM05D004505 ORTHO05D005249 8.6e-80 300.8 228 74.1
Atru.chr5.2374 Acer truncatum HOM05D004505 ORTHO05D005249 5.2e-77 291.6 227 73.1
Duzib132G0172 Durio zibethinus HOM05D004505 ORTHO05D005249 5.2e-77 291.6 226 71.7
Ciclev10028799m.g Citrus clementina HOM05D004505 ORTHO05D005249 2.0e-76 289.7 226 71.7
Gorai.002G010200 Gossypium raimondii HOM05D004505 ORTHO05D005249 5.8e-76 288.1 224 70.5
Gohir.D01G008500 Gossypium hirsutum HOM05D004505 ORTHO05D005249 7.6e-76 287.7 224 70.5
Cfa004636 Carpinus fangiana HOM05D004505 ORTHO05D005249 9.9e-76 287.3 228 71.5
Gohir.A01G008800 Gossypium hirsutum HOM05D004505 ORTHO05D005249 2.2e-75 286.2 224 70.5
CiPaw.05G016900 Carya illinoinensis HOM05D004505 ORTHO05D005249 6.4e-75 284.6 228 68.9
THA.LOC104819533 Tarenaya hassleriana HOM05D004505 ORTHO05D005249 1.1e-74 283.9 225 69.3
GSVIVG01037847001 Vitis vinifera HOM05D004505 ORTHO05D005249 1.9e-74 283.1 238 68.9
Gohir.A03G183100 Gossypium hirsutum HOM05D004505 ORTHO05D005249 3.2e-74 282.3 225 69.3
Gorai.005G232000 Gossypium raimondii HOM05D004505 ORTHO05D005249 7.1e-74 281.2 228 69.3
Duzib248G0916 Durio zibethinus HOM05D004505 ORTHO05D005249 9.2e-74 280.8 212 71.2
Lj5A218T89 Lonicera japonica HOM05D004505 ORTHO05D005249 1.2e-73 280.4 237 69.2
Gohir.D02G204700 Gossypium hirsutum HOM05D004505 ORTHO05D005249 7.8e-73 277.7 228 68.9
Prupe.8G143400 Prunus persica HOM05D004505 ORTHO05D005249 3.9e-72 275.4 226 69.5
QL11p030661 Quercus lobata HOM05D004505 ORTHO05D005249 5.1e-72 275.0 225 68.4
THA.LOC104807219 Tarenaya hassleriana HOM05D004505 ORTHO05D005249 1.9e-71 273.1 229 68.1
TAR376G1041 Trochodendron aralioides HOM05D004505 ORTHO05D005249 3.3e-71 272.3 243 64.6
Manes.10G082600 Manihot esculenta HOM05D004505 ORTHO05D005249 4.3e-71 271.9 226 69.0
MD05G1098600 Malus domestica HOM05D004505 ORTHO05D005249 5.6e-71 271.6 225 68.0
Dinv15801 Davidia involucrata HOM05D004505 ORTHO05D005249 7.3e-71 271.2 236 66.9
ClCG02G006770 Citrullus lanatus HOM05D004505 ORTHO05D005249 9.6e-71 270.8 228 66.7
TWI59G0623 Tripterygium wilfordii HOM05D004505 ORTHO05D005249 1.2e-70 270.4 230 68.3
TWI59G0705 Tripterygium wilfordii HOM05D004505 ORTHO05D005249 2.1e-70 269.6 229 68.6
Thhalv10022769m.g Eutrema salsugineum HOM05D004505 ORTHO05D005249 6.2e-70 268.1 226 67.3
BcaB07g31805 Brassica carinata HOM05D004505 ORTHO05D005249 1.4e-69 266.9 226 66.4
Dinv42232 Davidia involucrata HOM05D004505 ORTHO05D005249 1.8e-69 266.5 236 66.5
BcaB08g34571 Brassica carinata HOM05D004505 ORTHO05D005249 2.4e-69 266.2 226 66.4
CsaV3_7G007870 Cucumis sativus L. HOM05D004505 ORTHO05D005249 8.9e-69 264.2 227 64.3
Lalb_Chr02g0145031 Lupinus albus HOM05D004505 ORTHO05D005249 8.9e-69 264.2 225 65.8
TAR628G1542 Trochodendron aralioides HOM05D004505 ORTHO05D005249 1.5e-68 263.5 248 62.9
CARHR284820 Cardamine hirsuta HOM05D004505 ORTHO05D005249 3.4e-68 262.3 227 65.6
CiPaw.06G166100 Carya illinoinensis HOM05D004505 ORTHO05D005249 4.4e-68 261.9 226 65.5
Aa31LG8G12900 Aethionema arabicum HOM05D004505 ORTHO05D005249 5.8e-68 261.5 226 65.5
Aqoxy6G02689 Aquilegia oxysepala HOM05D004505 ORTHO05D005249 5.8e-68 261.5 234 65.8
A09p10570 Brassica napus HOM05D004505 ORTHO05D005249 7.6e-68 261.2 227 65.6
BraA09t36699Z Brassica rapa HOM05D004505 ORTHO05D005249 7.6e-68 261.2 227 65.6
Lalb_Chr06g0165181 Lupinus albus HOM05D004505 ORTHO05D005249 7.6e-68 261.2 226 65.9
C09p12500 Brassica napus HOM05D004505 ORTHO05D005249 9.9e-68 260.8 225 67.1
BcaC04g23063 Brassica carinata HOM05D004505 ORTHO05D005249 1.3e-67 260.4 225 66.7
Gohir.D12G020200 Gossypium hirsutum HOM05D004505 ORTHO05D005249 1.7e-67 260.0 227 66.1
AT2G14835 Arabidopsis thaliana HOM05D004505 ORTHO05D005249 2.2e-67 259.6 227 64.8
arahy.Tifrunner.gnm1.ann1.9IEF3S Arachis hypogaea HOM05D004505 ORTHO05D005249 2.9e-67 259.2 225 65.8
arahy.Tifrunner.gnm1.ann1.PUJ79J Arachis hypogaea HOM05D004505 ORTHO05D005249 2.9e-67 259.2 225 65.8
BcaC06g36021 Brassica carinata HOM05D004505 ORTHO05D005249 2.9e-67 259.2 225 64.4
CSS0013373 Camellia sinensis var. sinensis HOM05D004505 ORTHO05D005249 2.9e-67 259.2 234 66.7
CSS0020041 Camellia sinensis var. sinensis HOM05D004505 ORTHO05D005249 2.9e-67 259.2 234 66.7
BolC9t54145H Brassica oleracea HOM05D004505 ORTHO05D005249 4.9e-67 258.5 225 65.8
Sed0021181 Sechium edule HOM05D004505 ORTHO05D005249 1.1e-66 257.3 228 62.7
Sopen01g049410 Solanum pennellii HOM05D004505 ORTHO05D005249 1.1e-66 257.3 232 63.4
CANSAT25G1536 Cannabis sativa HOM05D004505 ORTHO05D005249 1.4e-66 256.9 228 65.4
Sabra16G0184400 Salix brachista HOM05D004505 ORTHO05D005249 1.4e-66 256.9 226 64.2
C07p08850 Brassica napus HOM05D004505 ORTHO05D005249 1.9e-66 256.5 225 64.0
BolC7t41299H Brassica oleracea HOM05D004505 ORTHO05D005249 1.9e-66 256.5 225 64.0
Carub.0003s2884 Capsella rubella HOM05D004505 ORTHO05D005249 1.9e-66 256.5 227 65.2
PGSC0003DMG400025845 Solanum tuberosum HOM05D004505 ORTHO05D005249 3.2e-66 255.8 232 62.9
Gohir.A12G020000 Gossypium hirsutum HOM05D004505 ORTHO05D005249 4.2e-66 255.4 227 64.8
Sabra09G0069000 Salix brachista HOM05D004505 ORTHO05D005249 4.2e-66 255.4 227 63.0
MELO3C018515.2 Cucumis melo HOM05D004505 ORTHO05D005249 5.4e-66 255.0 227 63.0
Lj5g0022267 Lotus japonicus HOM05D004505 ORTHO05D005249 5.4e-66 255.0 224 64.3
Solyc01g107150.3 Solanum lycopersicum HOM05D004505 ORTHO05D005249 5.4e-66 255.0 232 62.9
AL3G46600 Arabidopsis lyrata HOM05D004505 ORTHO05D005249 7.1e-66 254.6 227 63.9
Potri.009G089100 Populus trichocarpa HOM05D004505 ORTHO05D005249 7.1e-66 254.6 227 63.9
Phvul.007G044800 Phaseolus vulgaris HOM05D004505 ORTHO05D005249 9.3e-66 254.2 224 63.4
Actinidia00379 Actinidia chinensis HOM05D004505 ORTHO05D005249 1.2e-65 253.8 232 64.2
Nn1g04588 Nelumbo nucifera HOM05D004505 ORTHO05D005249 1.2e-65 253.8 244 63.5
Rhsim11G0153600 Rhododendron simsii HOM05D004505 ORTHO05D005249 1.6e-65 253.4 225 64.0
Actinidia04381 Actinidia chinensis HOM05D004505 ORTHO05D005249 2.1e-65 253.1 235 63.8
Nn5g30556 Nelumbo nucifera HOM05D004505 ORTHO05D005249 2.1e-65 253.1 247 61.1
Sc08g0004630 Simmondsia chinensis HOM05D004505 ORTHO05D005249 2.1e-65 253.1 229 63.8
VMungo0720G1717 Vigna mungo HOM05D004505 ORTHO05D005249 2.7e-65 252.7 225 63.6
Gorai.008G020600 Gossypium raimondii HOM05D004505 ORTHO05D005249 3.5e-65 252.3 227 65.2
AUR62042991 Chenopodium quinoa HOM05D004505 ORTHO05D005249 4.6e-65 251.9 225 64.9
Medtr1g106530 Medicago truncatula HOM05D004505 ORTHO05D005249 6.0e-65 251.5 227 63.0
Glyma.10G257600 Glycine max HOM05D004505 ORTHO05D005249 1.3e-64 250.4 225 63.6
Oeu021363.2 Olea europaea HOM05D004505 ORTHO05D005249 1.3e-64 250.4 230 62.2
RhsimUnG0124800 Rhododendron simsii HOM05D004505 ORTHO05D005249 2.3e-64 249.6 223 63.7
A03p45290 Brassica napus HOM05D004505 ORTHO05D005249 6.6e-64 248.1 224 64.3
Potri.001G294200 Populus trichocarpa HOM05D004505 ORTHO05D005249 8.7e-64 247.7 226 64.2
PSO541G1690 Papaver somniferum HOM05D004505 ORTHO05D005249 1.1e-63 247.3 225 62.7
TPR.G27082 Trifolium pratense HOM05D004505 ORTHO05D005249 1.1e-63 247.3 224 61.2
AUR62034088 Chenopodium quinoa HOM05D004505 ORTHO05D005249 1.5e-63 246.9 223 64.1
Glyma.20G133500 Glycine max HOM05D004505 ORTHO05D005249 3.3e-63 245.7 226 64.6
vmacro01967 Vaccinium macrocarpon HOM05D004505 ORTHO05D005249 3.3e-63 245.7 249 58.2
CAN.G606.52 Capsicum annuum HOM05D004505 ORTHO05D005249 1.3e-62 243.8 233 60.5
PSO675G5357 Papaver somniferum HOM05D004505 ORTHO05D005249 1.3e-62 243.8 225 62.2
RcHm_v2.0_Chr6g0253531 Rosa chinensis HOM05D004505 ORTHO05D005249 1.3e-62 243.8 227 63.0
Psat6g215360 Pisum sativum HOM05D004505 ORTHO05D005249 2.1e-62 243.0 224 62.5
SGA_v2.0_scaffold32G13000 Striga asiatica HOM05D004505 ORTHO05D005249 2.1e-62 243.0 234 61.1
FvH4_2g04180 Fragaria vesca HOM05D004505 ORTHO05D005249 2.8e-62 242.7 227 64.8
Ah.09g231890 Amaranthus hybridus HOM05D004505 ORTHO05D005249 3.6e-62 242.3 231 64.1
MD10G1104500 Malus domestica HOM05D004505 ORTHO05D005249 4.8e-62 241.9 223 63.7
Oeu011137.2 Olea europaea HOM05D004505 ORTHO05D005249 4.8e-62 241.9 235 60.9
SGA_v2.0_scaffold225G43031 Striga asiatica HOM05D004505 ORTHO05D005249 6.2e-62 241.5 235 61.7
FAN27G0277 Fragaria x ananassa HOM05D004505 ORTHO05D005249 1.4e-61 240.4 225 63.6
Hma1.2p1_1773F.1_g301730 Hydrangea macrophylla HOM05D004505 ORTHO05D005249 2.4e-61 239.6 228 62.7
Cc02_g19770 Coffea canephora HOM05D004505 ORTHO05D005249 4.0e-61 238.8 235 60.0
FAN24G0885 Fragaria x ananassa HOM05D004505 ORTHO05D005249 4.0e-61 238.8 225 64.4
CSS0024925 Camellia sinensis var. sinensis HOM05D004505 ORTHO05D005249 6.9e-61 238.0 233 60.9
BraA07t28342Z Brassica rapa HOM05D004505 ORTHO05D005249 1.2e-60 237.3 226 61.1
FAN15G2339 Fragaria x ananassa HOM05D004505 ORTHO05D005249 1.5e-60 236.9 224 64.3
Actinidia34364 Actinidia chinensis HOM05D004505 ORTHO05D005249 3.4e-60 235.7 224 60.7
EL10Ac8g19380 Beta vulgaris HOM05D004505 ORTHO05D005249 7.6e-60 234.6 226 61.9
FAN20G1406 Fragaria x ananassa HOM05D004505 ORTHO05D005249 9.9e-60 234.2 230 62.6
Eucgr.I01070 Eucalyptus grandis HOM05D004505 ORTHO05D005249 3.8e-59 232.3 226 61.1
SalBow3G2441 Salvia bowleyana HOM05D004505 ORTHO05D005249 3.8e-59 232.3 235 59.1
Migut.B00442 Erythranthe guttata HOM05D004505 ORTHO05D005249 1.1e-58 230.7 235 60.4
Os10g0346200 Oryza sativa ssp. japonica HOM05D004505 ORTHO05D005249 1.6e-57 226.9 239 58.6
CDE04G2422 Ceratophyllum demersum HOM05D004505 ORTHO05D005249 3.5e-57 225.7 246 55.3
MSTRG.16682 Avicennia marina HOM05D004505 ORTHO05D005249 4.6e-57 225.3 237 55.7
BcaC01g03086 Brassica carinata HOM05D004505 ORTHO05D005249 7.9e-57 224.6 225 57.3
Lsat_1_v5_gn_7_85241 Lactuca sativa HOM05D004505 ORTHO05D005249 2.1e-54 216.5 224 55.4
unitig_22.g6841 Utricularia gibba HOM05D004505 ORTHO05D005249 2.1e-54 216.5 226 55.8
PGR120G0009 Punica granatum HOM05D004505 ORTHO05D005249 8.1e-54 214.5 212 54.7
PGR142G4060 Punica granatum HOM05D004505 ORTHO05D005249 8.1e-54 214.5 212 54.7
BraA03t13662Z Brassica rapa HOM05D004505 ORTHO05D005249 2.4e-53 213.0 204 61.8
Sc14g0002880 Simmondsia chinensis HOM05D004505 ORTHO05D005249 3.1e-53 212.6 202 62.4
Nitab4.5_0012134g0030 Nicotiana tabacum HOM05D004505 ORTHO05D005249 4.0e-53 212.2 232 56.9
Sp3g28090 Schrenkiella parvula HOM05D004505 ORTHO05D005249 1.2e-52 210.7 225 54.2
Nitab4.5_0001105g0100 Nicotiana tabacum HOM05D004505 ORTHO05D005249 2.0e-52 209.9 232 56.5
unitig_8.g3418 Utricularia gibba HOM05D004505 ORTHO05D005249 9.9e-52 207.6 230 53.0
ECA236G1323 Erigeron canadensis HOM05D004505 ORTHO05D005249 3.8e-51 205.7 225 54.2
Oeu021361.1 Olea europaea HOM05D004505 ORTHO05D005249 6.4e-51 204.9 168 66.7
Peaxi162Scf00016g02841 Petunia axillaris HOM05D004505 ORTHO05D005249 1.4e-50 203.8 231 55.8
DCAR_001686 Daucus carota HOM05D004505 ORTHO05D005249 9.3e-50 201.1 225 55.6
ATR0208G025 Amborella trichopoda HOM05D004505 ORTHO05D005249 1.2e-49 200.7 241 53.5
Haze_10232 Corylus avellana HOM05D004505 ORTHO05D005249 1.2e-49 200.7 135 80.0
Ah.14g085580 Amaranthus hybridus HOM05D004505 ORTHO05D005249 2.7e-49 199.5 211 61.6
HanXRQChr04g0128621 Helianthus annuus HOM05D004505 ORTHO05D005249 2.7e-49 199.5 219 54.8
HanXRQChr16g0509281 Helianthus annuus HOM05D004505 ORTHO05D005249 1.3e-48 197.2 225 52.9
HPP92_019613 Vanilla planifolia HOM05D004505 ORTHO05D005249 6.7e-48 194.9 221 54.8
Ca_11038_v3 Cicer arietinum L. HOM05D004505 ORTHO05D005249 6.2e-46 188.3 178 59.0
Lsat_1_v5_gn_9_111801 Lactuca sativa HOM05D004505 ORTHO05D005249 6.9e-45 184.9 218 51.8
C03p56140 Brassica napus HOM05D004505 ORTHO05D005249 4.2e-42 175.6 144 65.3
Sed0004146 Sechium edule HOM05D004505 ORTHO05D005249 1.0e-40 171.0 228 50.9
CDE02G3713 Ceratophyllum demersum HOM05D004505 ORTHO05D005249 2.4e-37 159.8 181 54.7
SEGI_16422 Sequoiadendron giganteum HOM05D004505 ORTHO05D005249 5.9e-36 155.2 239 44.8
AagrBONN_evm.TU.Sc2ySwM_344.967 Anthoceros agrestis HOM05D004505 ORTHO05D005249 2.7e-25 119.8 222 40.5
Mapoly0069s0035 Marchantia polymorpha HOM05D004505 ORTHO05D005249 2.3e-24 116.7 241 37.8
DCAR_029121 Daucus carota HOM05D004505 ORTHO05D005249 2.8e-22 109.8 224 40.2
Haze_06953 Corylus avellana HOM05D067758 ORTHO05D005249 2.1e-17 93.6 78 66.7
TAR381G0366 Trochodendron aralioides HOM05D004505 ORTHO05D005249 1.4e-16 90.9 106 53.8
SMO361G0125 Selaginella moellendorffii HOM05D004505 ORTHO05D005249 2.3e-16 90.1 212 35.8
Pp3c14_26740 Physcomitrium patens HOM05D004505 ORTHO05D005249 3.9e-16 89.4 233 36.1
CDE07G0293 Ceratophyllum demersum HOM05D004505 ORTHO05D005249 6.3e-14 82.0 63 66.7
Pp3c17_14720 Physcomitrium patens HOM05D004505 ORTHO05D005249 2.6e-12 76.6 211 34.1
CBR_g49762 Chara braunii HOM05D004505 ORTHO05D005249 1.2e-09 67.8 120 40.8
Zm00001eb027340 Zea mays HOM05D004505 ORTHO05D005249 2.6e-07 60.1 110 39.1
BolC3t17904H Brassica oleracea HOM05D004505 ORTHO05D005249 6.3e-06 55.5 37 78.4


User provided reference genes

Program Settings