Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cpa.g.sc106.50 Carica papaya HOM05D006273 ORTHO05D007607 8.8e-182 640.2 332 100.0
Dinv42237 Davidia involucrata HOM05D006273 ORTHO05D007607 1.8e-94 350.1 332 61.7
Thecc.02G116800 Theobroma cacao HOM05D006273 ORTHO05D007607 3.1e-86 322.8 336 58.3
Prupe.8G144600 Prunus persica HOM05D006273 ORTHO05D007607 1.7e-84 317.0 334 57.5
Duzib132G0234 Durio zibethinus HOM05D006273 ORTHO05D007607 2.2e-84 316.6 336 57.1
Gohir.A12G019800 Gossypium hirsutum HOM05D006273 ORTHO05D007607 1.5e-83 313.9 341 57.2
Gorai.008G020400 Gossypium raimondii HOM05D006273 ORTHO05D007607 7.2e-83 311.6 341 56.9
Gohir.D12G020000 Gossypium hirsutum HOM05D006273 ORTHO05D007607 2.1e-82 310.1 341 56.6
Cfa004628 Carpinus fangiana HOM05D006273 ORTHO05D007607 3.6e-82 309.3 333 58.3
Actinidia04385 Actinidia chinensis HOM05D002857 ORTHO05D007919 1.4e-81 307.4 333 55.3
Hma1.2p1_1059F.1_g252960 Hydrangea macrophylla HOM05D006273 ORTHO05D007607 1.4e-81 307.4 333 55.9
COL.COLO4_32516 Corchorus olitorius HOM05D006273 ORTHO05D007607 2.3e-81 306.6 333 56.2
Nn5g30577 Nelumbo nucifera HOM05D006273 ORTHO05D007607 6.7e-81 305.1 336 55.4
Manes.10G081700 Manihot esculenta HOM05D006273 ORTHO05D007607 1.3e-79 300.8 339 55.5
Duzib248G0443 Durio zibethinus HOM05D006273 ORTHO05D007607 2.2e-79 300.1 344 55.2
CiPaw.05G017700 Carya illinoinensis HOM05D006273 ORTHO05D007607 1.1e-78 297.7 333 57.4
Ciclev10028827m.g Citrus clementina HOM05D006273 ORTHO05D007607 5.3e-78 295.4 336 55.4
MD05G1099900 Malus domestica HOM05D006273 ORTHO05D007607 6.5e-76 288.5 334 54.5
RcHm_v2.0_Chr6g0253781 Rosa chinensis HOM05D006273 ORTHO05D007607 3.2e-75 286.2 338 53.8
Potri.009G088600 Populus trichocarpa HOM05D006273 ORTHO05D007607 2.3e-73 280.0 334 53.9
QL11p030642 Quercus lobata HOM05D006273 ORTHO05D007607 2.3e-73 280.0 330 54.8
CSS0011953 Camellia sinensis var. sinensis HOM05D002857 ORTHO05D007919 5.7e-72 275.4 310 54.2
GSVIVG01037839001 Vitis vinifera HOM05D006273 ORTHO05D007607 1.3e-71 274.2 356 52.2
Haze_10223 Corylus avellana HOM05D006273 ORTHO05D007607 2.8e-71 273.1 311 56.3
Cc02_g19850 Coffea canephora HOM05D006273 ORTHO05D007607 3.7e-71 272.7 339 51.3
FAN15G3526 Fragaria x ananassa HOM05D006273 ORTHO05D007607 7.7e-69 265.0 328 51.2
MSTRG.5316 Avicennia marina HOM05D006273 ORTHO05D007607 2.5e-67 260.0 341 49.0
DCAR_001698 Daucus carota HOM05D006273 ORTHO05D007607 9.5e-67 258.1 341 48.4
Lj5A219G34 Lonicera japonica HOM05D006273 ORTHO05D007607 2.1e-66 256.9 349 49.3
FAN27G2995 Fragaria x ananassa HOM05D006273 ORTHO05D007607 6.1e-66 255.4 329 49.5
PGSC0003DMG400025745 Solanum tuberosum HOM05D006273 ORTHO05D007607 1.8e-65 253.8 346 48.0
FAN24G1968 Fragaria x ananassa HOM05D006273 ORTHO05D007607 3.0e-65 253.1 331 50.5
FAN24G2779 Fragaria x ananassa HOM05D006273 ORTHO05D007607 3.0e-65 253.1 331 50.5
TWI23G0281 Tripterygium wilfordii HOM05D006273 ORTHO05D007607 4.0e-65 252.7 333 49.2
Nitab4.5_0008075g0050 Nicotiana tabacum HOM05D006273 ORTHO05D007607 4.4e-64 249.2 346 49.1
Oeu010445.1 Olea europaea HOM05D006273 ORTHO05D007607 7.5e-64 248.4 310 53.9
PGR042G0373 Punica granatum HOM05D006273 ORTHO05D007607 3.7e-63 246.1 342 48.0
TAR381G1192 Trochodendron aralioides HOM05D006273 ORTHO05D007607 4.9e-63 245.7 328 49.4
FAN20G1056 Fragaria x ananassa HOM05D006273 ORTHO05D007607 5.4e-62 242.3 327 49.2
CANSAT25G0612 Cannabis sativa HOM05D006273 ORTHO05D007607 7.0e-62 241.9 336 47.6
Sopen01g049300 Solanum pennellii HOM05D006273 ORTHO05D007607 2.7e-61 240.0 336 49.1
CsaV3_4G000230 Cucumis sativus L. HOM05D006273 ORTHO05D007607 5.9e-61 238.8 344 48.5
ClCG10G010280 Citrullus lanatus HOM05D006273 ORTHO05D007607 1.3e-60 237.7 343 48.1
Sabra09G0068600 Salix brachista HOM05D006273 ORTHO05D007607 1.3e-60 237.7 393 45.0
CSS0045592 Camellia sinensis var. sinensis HOM05D006273 ORTHO05D007607 6.6e-60 235.3 271 52.8
FvH4_2g04340 Fragaria vesca HOM05D006273 ORTHO05D007607 6.6e-60 235.3 332 48.5
Rhsim05G0090800 Rhododendron simsii HOM05D002857 ORTHO05D007919 1.1e-59 234.6 366 44.3
Solyc01g107030.3 Solanum lycopersicum HOM05D006273 ORTHO05D007607 5.6e-59 232.3 336 47.9
SalBow3G1994 Salvia bowleyana HOM05D006273 ORTHO05D007607 2.1e-58 230.3 370 42.2
MELO3C018010.2 Cucumis melo HOM05D006273 ORTHO05D007607 3.6e-58 229.6 341 47.2
TAR628G0174 Trochodendron aralioides HOM05D006273 ORTHO05D007607 8.0e-58 228.4 335 47.2
vmacro19532 Vaccinium macrocarpon HOM05D006273 ORTHO05D007607 3.2e-54 216.5 404 41.1
CAN.G606.58 Capsicum annuum HOM05D006273 ORTHO05D007607 7.0e-54 215.3 317 44.8
THA.LOC104815220 Tarenaya hassleriana HOM05D006273 ORTHO05D007607 9.2e-54 214.9 335 46.3
Sed0011178 Sechium edule HOM05D006273 ORTHO05D007607 8.6e-52 208.4 343 43.7
PSO541G6083 Papaver somniferum HOM05D006273 ORTHO05D007607 1.1e-51 208.0 334 46.4
Aqoxy6G02639 Aquilegia oxysepala HOM05D006273 ORTHO05D007607 5.6e-51 205.7 288 48.6
Peaxi162Scf00016g02848 Petunia axillaris HOM05D006273 ORTHO05D007607 1.3e-47 194.5 314 42.7
PSO675G1322 Papaver somniferum HOM05D006273 ORTHO05D007607 2.9e-47 193.4 340 44.7
Nn1g04569 Nelumbo nucifera HOM05D006273 ORTHO05D007607 3.2e-46 189.9 340 41.2
Sc18g0007420 Simmondsia chinensis HOM05D006273 ORTHO05D007607 1.3e-44 184.5 326 42.6
Hund24173 Selenicereus undatus HOM05D006273 ORTHO05D007607 5.6e-43 179.1 306 43.5
arahy.Tifrunner.gnm1.ann1.71AIDN Arachis hypogaea HOM05D006273 ORTHO05D007607 1.2e-42 177.9 334 40.7
HanXRQChr10g0292221 Helianthus annuus HOM05D006273 ORTHO05D007607 4.7e-42 176.0 333 44.1
Sc18g0007460 Simmondsia chinensis HOM05D006273 ORTHO05D007607 1.1e-41 174.9 326 42.0
EL10Ac9g22769 Beta vulgaris HOM05D006273 ORTHO05D007607 1.4e-41 174.5 343 38.5
Glyma.20G134100 Glycine max HOM05D006273 ORTHO05D007607 3.1e-41 173.3 328 42.7
Lj5g0005423 Lotus japonicus HOM05D006273 ORTHO05D007607 2.6e-40 170.2 349 41.0
Phvul.002G051700 Phaseolus vulgaris HOM05D006273 ORTHO05D007607 4.4e-40 169.5 328 41.5
VMungo0720G2467 Vigna mungo HOM05D006273 ORTHO05D007607 4.4e-40 169.5 328 39.9
Eucgr.G01219 Eucalyptus grandis HOM05D006273 ORTHO05D007607 7.5e-40 168.7 273 45.8
Lsat_1_v5_gn_5_114180 Lactuca sativa HOM05D006273 ORTHO05D007607 9.9e-40 168.3 336 42.0
ECA234G1150 Erigeron canadensis HOM05D006273 ORTHO05D007607 1.3e-39 167.9 339 42.2
arahy.Tifrunner.gnm1.ann1.P501AI Arachis hypogaea HOM05D006273 ORTHO05D007607 1.4e-38 164.5 349 38.1
Phvul.007G045300 Phaseolus vulgaris HOM05D006273 ORTHO05D007607 7.1e-38 162.2 339 38.9
VMungo1215G3137 Vigna mungo HOM05D006273 ORTHO05D007607 7.1e-38 162.2 332 40.7
Sp3g17690 Schrenkiella parvula HOM05D006273 ORTHO05D007607 9.2e-38 161.8 337 40.1
SGA_v2.0_scaffold225G43040 Striga asiatica HOM05D006273 ORTHO05D007607 9.2e-38 161.8 311 38.6
Thhalv10021227m.g Eutrema salsugineum HOM05D006273 ORTHO05D007607 1.2e-37 161.4 335 40.0
CARHR095110 Cardamine hirsuta HOM05D006273 ORTHO05D007607 3.5e-37 159.8 337 40.9
unitig_21.g20718 Utricularia gibba HOM05D002857 ORTHO05D007919 4.6e-37 159.5 314 39.2
Carub.0003s1952 Capsella rubella HOM05D006273 ORTHO05D007607 1.0e-36 158.3 335 39.7
Glyma.10G257100 Glycine max HOM05D006273 ORTHO05D007607 2.5e-35 153.7 328 40.2
Atru.chr5.2357 Acer truncatum HOM05D006273 ORTHO05D007607 2.1e-34 150.6 265 45.7
C05p45180 Brassica napus HOM05D006273 ORTHO05D007607 2.8e-34 150.2 333 41.4
AT3G19650 Arabidopsis thaliana HOM05D006273 ORTHO05D007607 3.1e-33 146.7 332 38.6
Lalb_Chr06g0165121 Lupinus albus HOM05D006273 ORTHO05D007607 3.1e-33 146.7 329 39.8
Aa31LG8G6430 Aethionema arabicum HOM05D006273 ORTHO05D007607 4.0e-33 146.4 316 39.9
TPR.G27136 Trifolium pratense HOM05D006273 ORTHO05D007607 6.8e-33 145.6 330 38.5
Ah.01g002130 Amaranthus hybridus HOM05D006273 ORTHO05D007607 1.5e-32 144.4 306 37.3
BcaC05g28438 Brassica carinata HOM05D006273 ORTHO05D007607 2.0e-32 144.1 333 40.2
Glyma.01G242500 Glycine max HOM05D006273 ORTHO05D007607 1.7e-31 141.0 327 38.5
BolC5t33244H Brassica oleracea HOM05D000470 ORTHO05D000348 3.8e-31 139.8 333 40.8
BcaB06g26035 Brassica carinata HOM05D006273 ORTHO05D007607 4.9e-31 139.4 335 40.0
Medtr1g106210 Medicago truncatula HOM05D006273 ORTHO05D007607 1.4e-30 137.9 334 37.4
Psat6g214920 Pisum sativum HOM05D006273 ORTHO05D007607 7.1e-30 135.6 222 43.7
ATR1153G071 Amborella trichopoda HOM05D006273 ORTHO05D007607 1.6e-29 134.4 347 36.6
HPP92_007764 Vanilla planifolia HOM05D006273 ORTHO05D007607 6.6e-28 129.0 343 36.4
Migut.N01140 Erythranthe guttata HOM05D006273 ORTHO05D007607 8.7e-28 128.6 334 36.8
AUR62017546 Chenopodium quinoa HOM05D006273 ORTHO05D007607 1.1e-27 128.3 307 35.8
Oeu037282.1 Olea europaea HOM05D006273 ORTHO05D007607 2.5e-27 127.1 240 40.8
Lj1g0018578 Lotus japonicus HOM05D006273 ORTHO05D007607 3.3e-27 126.7 323 35.0
Nitab4.5_0001105g0020 Nicotiana tabacum HOM05D006273 ORTHO05D007607 4.3e-27 126.3 172 48.8
Potri.001G295000 Populus trichocarpa HOM05D006273 ORTHO05D007607 4.3e-27 126.3 150 54.7
Hund24138 Selenicereus undatus HOM05D006273 ORTHO05D007607 9.6e-27 125.2 208 43.3
Glyma.11G001800 Glycine max HOM05D006273 ORTHO05D007607 4.7e-26 122.9 334 36.2
Ca_11032_v3 Cicer arietinum L. HOM05D006273 ORTHO05D007607 4.0e-25 119.8 182 46.2
AL3G33090 Arabidopsis lyrata HOM05D006273 ORTHO05D007607 3.8e-23 113.2 331 35.3
CDE02G4649 Ceratophyllum demersum HOM05D006273 ORTHO05D007607 3.8e-23 113.2 274 36.5
SHI05153 Sapria himalayana HOM05D006273 ORTHO05D007607 1.7e-20 104.4 319 35.7
Zm00001eb007690 Zea mays HOM05D006273 ORTHO05D007607 3.0e-20 103.6 341 36.4
FvH4_2g03741 Fragaria vesca HOM05D006273 ORTHO05D007607 3.9e-20 103.2 119 55.5
TWI59G0086 Tripterygium wilfordii HOM05D006273 ORTHO05D007607 1.1e-19 101.7 202 38.1
Os03g0203000 Oryza sativa ssp. japonica HOM05D006273 ORTHO05D007607 2.5e-19 100.5 305 32.8
AUR62025214 Chenopodium quinoa HOM05D000052 ORTHO05D007607 1.6e-18 97.8 197 36.0
CDE04G2504 Ceratophyllum demersum HOM05D006273 ORTHO05D007607 6.2e-18 95.9 319 33.9
Dinv15806 Davidia involucrata HOM05D006273 ORTHO05D007607 2.6e-16 90.5 69 71.0
Aqoxy6G02626 Aquilegia oxysepala HOM05D002857 ORTHO05D007919 9.9e-16 88.6 221 38.9
TPR.G8308 Trifolium pratense HOM05D006273 ORTHO05D007607 1.3e-15 88.2 142 43.0
Actinidia00372 Actinidia chinensis HOM05D006273 ORTHO05D007607 1.4e-14 84.7 105 52.4
AUR62044228 Chenopodium quinoa HOM05D006273 ORTHO05D007607 1.9e-14 84.3 309 32.7
SEGI_25142 Sequoiadendron giganteum HOM05D006273 ORTHO05D007607 2.8e-10 70.5 229 32.8
C01p44480 Brassica napus HOM05D006273 ORTHO05D007607 6.9e-09 65.9 54 66.7
MBI19_g46225_MAGBIO Magnolia biondii HOM05D006273 ORTHO05D015157 5.8e-08 62.8 84 51.2
Psat4g227520 Pisum sativum HOM05D006273 ORTHO05D007607 2.9e-07 60.5 244 30.3
Actinidia27988 Actinidia chinensis HOM05D006273 ORTHO05D007607 4.9e-07 59.7 49 69.4
Dinv15805 Davidia involucrata HOM05D006273 ORTHO05D007607 4.9e-07 59.7 127 39.4


User provided reference genes

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