Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cpa.g.sc106.25 Carica papaya HOM05D004628 ORTHO05D005166 0.0e+00 1332.4 725 100.0
Atru.chr5.2254 Acer truncatum HOM05D004628 ORTHO05D005166 4.4e-117 426.4 866 41.7
Prupe.8G151700 Prunus persica HOM05D004628 ORTHO05D005166 4.0e-110 403.3 873 40.0
Thecc.02G121000 Theobroma cacao HOM05D004628 ORTHO05D005166 7.0e-107 392.5 878 40.7
QL93p0138_0014 Quercus lobata HOM05D004628 ORTHO05D005166 6.6e-105 386.0 857 39.7
QL11p028919 Quercus lobata HOM05D004628 ORTHO05D005166 8.6e-105 385.6 857 39.7
Hma1.2p1_1051F.1_g252220 Hydrangea macrophylla HOM05D004628 ORTHO05D005166 6.1e-103 379.4 771 39.9
Duzib132G0942 Durio zibethinus HOM05D004628 ORTHO05D005166 3.1e-102 377.1 891 37.7
Gohir.A03G180400 Gossypium hirsutum HOM05D004628 ORTHO05D005166 2.4e-99 367.5 858 37.6
TWI14G1143 Tripterygium wilfordii HOM05D004628 ORTHO05D005166 5.6e-96 356.3 856 38.0
Dinv16065 Davidia involucrata HOM05D004628 ORTHO05D005166 2.8e-95 354.0 837 37.5
Gohir.D02G203066 Gossypium hirsutum HOM05D004628 ORTHO05D005166 2.3e-94 350.9 856 37.7
Gorai.005G229300 Gossypium raimondii HOM05D004628 ORTHO05D005166 6.8e-94 349.4 876 36.6
Cfa004712 Carpinus fangiana HOM05D004628 ORTHO05D005166 1.2e-93 348.6 909 37.5
CiPaw.06G163200 Carya illinoinensis HOM05D004628 ORTHO05D005166 1.1e-91 342.0 937 36.4
CSS0024832 Camellia sinensis var. sinensis HOM05D004628 ORTHO05D005166 1.9e-88 331.3 861 35.4
TAR381G0961 Trochodendron aralioides HOM05D004628 ORTHO05D005166 3.4e-85 320.5 826 37.3
Ciclev10027822m.g Citrus clementina HOM05D004628 ORTHO05D005166 1.6e-82 311.6 839 36.6
Glyma.17G013400 Glycine max HOM05D004628 ORTHO05D005166 2.7e-82 310.8 839 36.9
Sabra09G0065100 Salix brachista HOM05D004628 ORTHO05D005166 6.6e-81 306.2 869 34.4
COL.COLO4_32472 Corchorus olitorius HOM05D004628 ORTHO05D005166 1.9e-80 304.7 855 35.0
TAR628G0237 Trochodendron aralioides HOM05D004628 ORTHO05D005166 2.4e-78 297.7 861 33.9
Potri.009G084400 Populus trichocarpa HOM05D004628 ORTHO05D005166 4.0e-78 297.0 895 33.9
Lj5A222T77 Lonicera japonica HOM05D004628 ORTHO05D005166 5.2e-78 296.6 819 35.2
Manes.07G052400 Manihot esculenta HOM05D004628 ORTHO05D005166 5.2e-78 296.6 841 33.7
Manes.10G088200 Manihot esculenta HOM05D004628 ORTHO05D005166 2.6e-77 294.3 871 36.7
Sabra16G0180900 Salix brachista HOM05D004628 ORTHO05D005166 4.4e-77 293.5 890 33.3
vmacro22260 Vaccinium macrocarpon HOM05D004628 ORTHO05D005166 1.7e-76 291.6 808 35.6
Rhsim05G0093300 Rhododendron simsii HOM05D004628 ORTHO05D005166 2.2e-76 291.2 843 34.5
Gohir.A13G048100 Gossypium hirsutum HOM05D004628 ORTHO05D005166 5.4e-75 286.6 747 36.5
FvH4_2g03070 Fragaria vesca HOM05D004628 ORTHO05D005166 1.2e-74 285.4 857 35.2
Nn6g32057 Nelumbo nucifera HOM05D004628 ORTHO05D005166 2.7e-74 284.3 829 34.6
Glyma.07G260600 Glycine max HOM05D004628 ORTHO05D005166 3.5e-74 283.9 862 36.3
FAN24G0611 Fragaria x ananassa HOM05D004628 ORTHO05D005166 4.6e-74 283.5 854 35.0
FAN27G1701 Fragaria x ananassa HOM05D004628 ORTHO05D005166 7.8e-74 282.7 855 34.7
Dinv09529 Davidia involucrata HOM05D004628 ORTHO05D005166 1.0e-73 282.3 880 33.6
FAN20G2820 Fragaria x ananassa HOM05D004628 ORTHO05D005166 1.3e-71 275.4 857 34.3
Haze_10333 Corylus avellana HOM05D004628 ORTHO05D005166 2.1e-71 274.6 906 35.5
Phvul.003G078900 Phaseolus vulgaris HOM05D004628 ORTHO05D005166 2.8e-71 274.2 879 34.7
FAN15G3289 Fragaria x ananassa HOM05D004628 ORTHO05D005166 6.2e-71 273.1 830 34.8
Sopen01g049070 Solanum pennellii HOM05D004628 ORTHO05D005166 1.4e-70 271.9 805 32.5
Solyc01g106750.2 Solanum lycopersicum HOM05D004628 ORTHO05D005166 1.8e-70 271.6 804 33.6
TPR.G37037 Trifolium pratense HOM05D004628 ORTHO05D005166 2.4e-70 271.2 817 34.0
Gorai.013G052200 Gossypium raimondii HOM05D004628 ORTHO05D005166 1.2e-69 268.9 739 34.9
VMungo1215G2063 Vigna mungo HOM05D004628 ORTHO05D005166 1.2e-69 268.9 837 33.9
PGSC0003DMG400001291 Solanum tuberosum HOM05D004628 ORTHO05D005166 2.0e-69 268.1 808 33.0
Gohir.D13G046500 Gossypium hirsutum HOM05D004628 ORTHO05D005166 2.2e-68 264.6 739 34.8
Lalb_Chr18g0056371 Lupinus albus HOM05D004628 ORTHO05D005166 1.9e-67 261.5 893 33.6
Eucgr.B01419 Eucalyptus grandis HOM05D004628 ORTHO05D005166 1.6e-66 258.5 823 33.3
MSTRG.16666 Avicennia marina HOM05D004628 ORTHO05D005166 2.1e-66 258.1 861 33.8
RcHm_v2.0_Chr6g0247921 Rosa chinensis HOM05D004628 ORTHO05D005166 3.5e-66 257.3 840 34.5
THA.LOC104819526 Tarenaya hassleriana HOM05D004628 ORTHO05D005166 3.5e-66 257.3 898 32.1
Medtr4g132160 Medicago truncatula HOM05D004628 ORTHO05D005166 7.8e-66 256.1 880 32.4
Cc02_g20190 Coffea canephora HOM05D004628 ORTHO05D005166 1.0e-65 255.8 828 33.3
Lj4g0013789 Lotus japonicus HOM05D004628 ORTHO05D005166 9.6e-64 249.2 894 33.0
arahy.Tifrunner.gnm1.ann1.V3P7C9 Arachis hypogaea HOM05D000513 ORTHO05D005786 1.8e-62 245.0 819 34.2
arahy.Tifrunner.gnm1.ann1.EFUN8Y Arachis hypogaea HOM05D004628 ORTHO05D005166 2.6e-61 241.1 831 34.2
AT2G16270 Arabidopsis thaliana HOM05D004628 ORTHO05D005166 9.9e-61 239.2 818 33.5
BraA07t28247Z Brassica rapa HOM05D004628 ORTHO05D005166 9.9e-61 239.2 786 32.2
Actinidia28002 Actinidia chinensis HOM05D004628 ORTHO05D006160 8.4e-60 236.1 752 35.1
Potri.001G289100 Populus trichocarpa HOM05D004628 ORTHO05D005166 1.9e-59 235.0 777 33.6
AL3G52350 Arabidopsis lyrata HOM05D004628 ORTHO05D005166 4.2e-59 233.8 794 33.6
Nitab4.5_0000772g0030 Nicotiana tabacum HOM05D004628 ORTHO05D005166 5.4e-59 233.4 831 31.4
Carub.0003s2996 Capsella rubella HOM05D004628 ORTHO05D005166 1.3e-57 228.8 836 33.7
A07p04590 Brassica napus HOM05D004628 ORTHO05D005166 1.8e-57 228.4 786 31.0
BolC7t41157H Brassica oleracea HOM05D004628 ORTHO05D005166 5.1e-57 226.9 797 32.2
C07p07410 Brassica napus HOM05D004628 ORTHO05D005166 6.7e-57 226.5 798 32.2
Nitab4.5_0010657g0040 Nicotiana tabacum HOM05D004628 ORTHO05D005166 1.1e-56 225.7 833 31.2
CARHR106490 Cardamine hirsuta HOM05D004628 ORTHO05D005166 1.3e-55 222.2 794 32.6
Sp3g29460 Schrenkiella parvula HOM05D004628 ORTHO05D005166 2.8e-55 221.1 902 29.0
Ca_21082_v3 Cicer arietinum L. HOM05D004628 ORTHO05D005166 1.4e-54 218.8 902 32.0
CsaV3_4G000030 Cucumis sativus L. HOM05D004628 ORTHO05D005166 9.0e-54 216.1 933 29.8
DCAR_021936 Daucus carota HOM05D004628 ORTHO05D005166 9.0e-54 216.1 986 28.9
arahy.Tifrunner.gnm1.ann1.L5X8FN Arachis hypogaea HOM05D004628 ORTHO05D005166 1.5e-53 215.3 902 30.2
Peaxi162Scf00016g03244 Petunia axillaris HOM05D004628 ORTHO05D005166 2.0e-53 214.9 900 30.0
Hund00415 Selenicereus undatus HOM05D004628 ORTHO05D005166 4.5e-53 213.8 906 30.6
ClCG10G009980 Citrullus lanatus HOM05D004628 ORTHO05D005166 2.2e-52 211.5 931 29.2
BcaC06g36138 Brassica carinata HOM05D004628 ORTHO05D005166 4.9e-52 210.3 797 31.5
arahy.Tifrunner.gnm1.ann1.R9786Y Arachis hypogaea HOM05D004628 ORTHO05D005166 6.4e-52 209.9 919 29.9
Oeu037295.1 Olea europaea HOM05D004628 ORTHO05D005166 6.4e-52 209.9 829 31.6
Aqoxy6G01519 Aquilegia oxysepala HOM05D004628 ORTHO05D005166 8.4e-52 209.5 842 31.2
PGR142G3374 Punica granatum HOM05D004628 ORTHO05D005166 9.3e-51 206.1 838 32.0
SalBow6G1764 Salvia bowleyana HOM05D004628 ORTHO05D005166 1.8e-49 201.8 774 33.2
SalBow6G5308 Salvia bowleyana HOM05D004628 ORTHO05D005166 2.3e-49 201.4 774 33.2
Thhalv10022556m.g Eutrema salsugineum HOM05D004628 ORTHO05D005166 3.9e-49 200.7 873 30.1
Prupe.8G151500 Prunus persica HOM05D004628 ORTHO05D005166 8.7e-49 199.5 343 45.8
Migut.B00478 Erythranthe guttata HOM05D004628 ORTHO05D005166 2.5e-48 198.0 874 30.1
SGA_v2.0_scaffold32G12978 Striga asiatica HOM05D004628 ORTHO05D005166 4.3e-48 197.2 818 30.6
AUR62027031 Chenopodium quinoa HOM05D004628 ORTHO05D005166 7.4e-48 196.4 839 29.0
Ah.01g024550 Amaranthus hybridus HOM05D004628 ORTHO05D005166 9.6e-48 196.1 841 30.7
Lalb_Chr15g0087631 Lupinus albus HOM05D004628 ORTHO05D005166 1.2e-45 189.1 486 35.4
AL1G28790 Arabidopsis lyrata HOM05D004628 ORTHO05D005166 7.6e-45 186.4 872 29.0
AUR62030875 Chenopodium quinoa HOM05D004628 ORTHO05D005166 5.0e-44 183.7 844 29.0
MELO3C018028.2 Cucumis melo HOM05D004628 ORTHO05D005166 5.0e-44 183.7 901 28.6
Thhalv10006806m.g Eutrema salsugineum HOM05D004628 ORTHO05D005166 6.5e-44 183.3 848 28.1
AT1G16630 Arabidopsis thaliana HOM05D004628 ORTHO05D005166 1.1e-43 182.6 881 28.5
PSO210G3573 Papaver somniferum HOM05D004628 ORTHO05D005166 1.1e-43 182.6 885 28.9
Ah.01g007160 Amaranthus hybridus HOM05D004628 ORTHO05D005166 4.2e-43 180.6 718 30.5
ECA234G3304 Erigeron canadensis HOM05D004628 ORTHO05D005166 4.2e-43 180.6 746 30.4
Sc08g0004290 Simmondsia chinensis HOM05D004628 ORTHO05D005166 1.0e-41 176.0 882 27.2
Carub.0001s1637 Capsella rubella HOM05D004628 ORTHO05D005166 2.3e-41 174.9 886 28.4
CARHR017100 Cardamine hirsuta HOM05D004628 ORTHO05D005166 1.5e-40 172.2 871 28.4
Lsat_1_v5_gn_5_111860 Lactuca sativa HOM05D004628 ORTHO05D005166 4.3e-40 170.6 759 31.5
Sed0020853 Sechium edule HOM05D004628 ORTHO05D005166 5.7e-40 170.2 892 28.9
Sp1g14770 Schrenkiella parvula HOM05D004628 ORTHO05D005166 1.3e-39 169.1 881 27.6
HanXRQChr04g0101671 Helianthus annuus HOM05D004628 ORTHO05D005166 3.7e-39 167.5 761 31.4
PSO447G0365 Papaver somniferum HOM05D004628 ORTHO05D005166 3.7e-39 167.5 902 29.0
Aa31LG8G13660 Aethionema arabicum HOM05D004628 ORTHO05D005166 1.5e-37 162.2 831 28.9
MBI16_g18399_MAGBIO Magnolia biondii HOM05D004628 ORTHO05D005166 2.9e-36 157.9 511 31.7
SGA_v2.0_scaffold519G52683 Striga asiatica HOM05D004628 ORTHO05D005166 1.9e-35 155.2 864 30.6
Psat4g006640 Pisum sativum HOM05D004628 ORTHO05D005166 5.5e-35 153.7 971 27.5
C05p14910 Brassica napus HOM05D004628 ORTHO05D005166 4.6e-34 150.6 895 26.8
BolC5t30206H Brassica oleracea HOM05D004628 ORTHO05D005166 6.1e-34 150.2 887 27.3
A06p12620 Brassica napus HOM05D004628 ORTHO05D005166 7.9e-34 149.8 899 27.0
BraA06t24423Z Brassica rapa HOM05D004628 ORTHO05D005166 2.8e-31 141.4 909 26.5
GSVIVG01037037001 Vitis vinifera HOM05D004628 ORTHO05D005166 2.4e-30 138.3 135 59.3
EL10Ac4g09112 Beta vulgaris HOM05D004628 ORTHO05D005166 4.1e-30 137.5 903 26.9
arahy.Tifrunner.gnm1.ann1.53VTV0 Arachis hypogaea HOM05D004628 ORTHO05D005166 2.9e-28 131.3 266 40.2
Atru.chr1.1899 Acer truncatum HOM05D004628 ORTHO05D005166 4.4e-24 117.5 175 48.6
unitig_744.g24202 Utricularia gibba HOM05D004628 ORTHO05D005166 1.1e-22 112.8 756 25.8
unitig_60.g25465 Utricularia gibba HOM05D004628 ORTHO05D005166 2.4e-22 111.7 850 26.7
HPP92_001855 Vanilla planifolia HOM05D004628 ORTHO05D005166 2.6e-21 108.2 755 27.5
Psat6g212600 Pisum sativum HOM05D004628 ORTHO05D005166 4.5e-21 107.5 315 35.9
Duzib132G1149 Durio zibethinus HOM05D004628 ORTHO05D005166 8.5e-20 103.2 325 33.2
BcaC05g25526 Brassica carinata HOM05D004628 ORTHO05D005166 4.2e-19 100.9 956 24.9
CAN.G411.101 Capsicum annuum HOM05D002370 ORTHO05D005166 2.1e-18 98.6 706 25.9
Lsat_1_v5_gn_5_129280 Lactuca sativa HOM05D004628 ORTHO05D005166 2.7e-18 98.2 249 37.3
CAN.G289.65 Capsicum annuum HOM05D004628 ORTHO05D005166 8.8e-17 93.2 252 38.9
ATR0767G029 Amborella trichopoda HOM05D004628 ORTHO05D005166 1.7e-15 89.0 754 25.5
SEGI_16491 Sequoiadendron giganteum HOM05D004628 ORTHO05D005166 5.3e-14 84.0 305 32.8
arahy.Tifrunner.gnm1.ann1.GD5ZZG Arachis hypogaea HOM05D004628 ORTHO05D005166 3.5e-13 81.3 245 35.5
FAN09G3722 Fragaria x ananassa HOM05D004628 ORTHO05D005166 2.2e-12 78.6 99 49.5
Psat5g077040 Pisum sativum HOM05D004628 ORTHO05D005166 2.9e-12 78.2 99 51.5
FvH4_6g23772 Fragaria vesca HOM05D004628 ORTHO05D005166 3.2e-11 74.7 170 34.7
CAN.G535.2 Capsicum annuum HOM05D004628 ORTHO05D005166 5.5e-11 73.9 151 44.4
VMungo1215G3006 Vigna mungo HOM05D004628 ORTHO05D005166 9.4e-11 73.2 78 56.4
CAN.G289.56 Capsicum annuum HOM05D004628 ORTHO05D005166 2.7e-10 71.6 176 37.5
Nn5g30859 Nelumbo nucifera HOM05D004628 ORTHO05D005166 4.7e-10 70.9 104 47.1
CAN.G289.57 Capsicum annuum HOM05D004628 ORTHO05D005166 1.4e-09 69.3 171 38.0
Os03g0672400 Oryza sativa ssp. japonica HOM05D058439 ORTHO05D005166 1.8e-09 68.9 794 24.9
Psat0ss6263g0240 Pisum sativum HOM05D004165 ORTHO05D005166 8.8e-09 66.6 108 43.5
Nitab4.5_0008331g0010 Nicotiana tabacum HOM05D004628 ORTHO05D005166 3.4e-08 64.7 199 35.7
TWI18G0382 Tripterygium wilfordii HOM05D008208 ORTHO05D010143 3.4e-08 64.7 233 32.2
Nn1g01808 Nelumbo nucifera HOM05D004628 ORTHO05D005166 7.5e-08 63.5 63 58.7
PSO210G1301 Papaver somniferum HOM05D029104 ORTHO05D010143 9.8e-08 63.2 171 31.6
PSO210G2837 Papaver somniferum HOM05D029104 ORTHO05D010143 9.8e-08 63.2 168 31.5
GSVIVG01037038001 Vitis vinifera HOM05D004628 ORTHO05D005166 2.2e-07 62.0 56 69.6
Dinv30429 Davidia involucrata HOM05D008208 ORTHO05D010143 2.8e-07 61.6 290 27.9
TAR639G0001 Trochodendron aralioides HOM05D008208 ORTHO05D010143 8.3e-07 60.1 241 32.0
CAN.G289.55 Capsicum annuum HOM05D004628 ORTHO05D005166 1.1e-06 59.7 327 32.1
TAR626G1368 Trochodendron aralioides HOM05D008208 ORTHO05D010143 1.8e-06 58.9 312 28.5


User provided reference genes

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