Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cpa.g.sc106.24 Carica papaya HOM05D002370 ORTHO05D003878 6.7e-168 594.0 306 100.0
Gohir.D01G009100 Gossypium hirsutum HOM05D002370 ORTHO05D003878 2.3e-136 489.2 292 85.3
Gorai.002G011200 Gossypium raimondii HOM05D002370 ORTHO05D003878 2.3e-136 489.2 292 85.3
Thecc.02G120900 Theobroma cacao HOM05D002370 ORTHO05D003878 2.3e-136 489.2 292 85.6
Gohir.A12G018200 Gossypium hirsutum HOM05D002370 ORTHO05D003878 4.4e-135 485.0 292 84.2
Gorai.008G019100 Gossypium raimondii HOM05D002370 ORTHO05D003878 4.4e-135 485.0 292 84.2
Gohir.D12G018800 Gossypium hirsutum HOM05D002370 ORTHO05D003878 9.8e-135 483.8 292 84.2
MD00G1031100 Malus domestica HOM05D002370 ORTHO05D003878 1.3e-134 483.4 292 83.6
MD10G1112000 Malus domestica HOM05D002370 ORTHO05D003878 1.3e-134 483.4 292 83.6
Ciclev10027661m.g Citrus clementina HOM05D002370 ORTHO05D003878 2.2e-134 482.6 292 85.3
Prupe.8G151300 Prunus persica HOM05D002370 ORTHO05D003878 1.1e-133 480.3 292 82.9
Duzib132G1084 Durio zibethinus HOM05D002370 ORTHO05D003878 5.9e-132 474.6 293 83.6
Glyma.01G241300 Glycine max HOM05D002370 ORTHO05D003878 8.6e-131 470.7 292 83.9
RcHm_v2.0_Chr6g0247951 Rosa chinensis HOM05D002370 ORTHO05D003878 1.5e-130 469.9 292 81.8
MD05G1107800 Malus domestica HOM05D002370 ORTHO05D003878 2.5e-130 469.2 292 81.5
THA.LOC104826500 Tarenaya hassleriana HOM05D002370 ORTHO05D003878 3.3e-130 468.8 292 80.1
Glyma.11G002600 Glycine max HOM05D002370 ORTHO05D003878 5.5e-130 468.0 292 83.6
FAN20G2522 Fragaria x ananassa HOM05D002370 ORTHO05D003878 7.2e-130 467.6 285 83.9
Atru.chr4.144 Acer truncatum HOM05D002370 ORTHO05D003878 9.5e-130 467.2 293 83.3
AL1G57600 Arabidopsis lyrata HOM05D002370 ORTHO05D003878 4.7e-129 464.9 292 80.1
AT1G50030 Arabidopsis thaliana HOM05D002370 ORTHO05D003878 4.7e-129 464.9 292 80.1
FAN15G3522 Fragaria x ananassa HOM05D002370 ORTHO05D003878 4.7e-129 464.9 292 81.8
VMungo1215G1081 Vigna mungo HOM05D002370 ORTHO05D003878 4.7e-129 464.9 292 83.2
CSS0028039 Camellia sinensis var. sinensis HOM05D002370 ORTHO05D003878 6.1e-129 464.5 293 81.2
FAN27G1380 Fragaria x ananassa HOM05D002370 ORTHO05D003878 6.1e-129 464.5 292 81.5
Nn5g30713 Nelumbo nucifera HOM05D002370 ORTHO05D003878 6.1e-129 464.5 292 81.8
TAR381G0773 Trochodendron aralioides HOM05D002370 ORTHO05D003878 6.1e-129 464.5 292 82.2
TWI59G1328 Tripterygium wilfordii HOM05D002370 ORTHO05D003878 8.0e-129 464.2 292 82.5
Atru.chr4.155 Acer truncatum HOM05D002370 ORTHO05D003878 1.0e-128 463.8 293 82.9
MELO3C018533.2 Cucumis melo HOM05D002370 ORTHO05D003878 1.0e-128 463.8 285 83.2
CsaV3_7G007670 Cucumis sativus L. HOM05D002370 ORTHO05D003878 1.0e-128 463.8 285 83.2
Lj5C222G6 Lonicera japonica HOM05D002370 ORTHO05D003878 1.4e-128 463.4 292 80.1
Manes.07G052660 Manihot esculenta HOM05D002370 ORTHO05D003878 3.0e-128 462.2 292 80.1
Phvul.002G049900 Phaseolus vulgaris HOM05D002370 ORTHO05D003878 3.0e-128 462.2 292 82.9
Carub.0001s3921 Capsella rubella HOM05D002370 ORTHO05D003878 4.0e-128 461.8 292 79.8
FvH4_2g03080 Fragaria vesca HOM05D002370 ORTHO05D003878 4.0e-128 461.8 292 81.2
FAN24G1227 Fragaria x ananassa HOM05D002370 ORTHO05D003878 4.0e-128 461.8 292 81.2
arahy.Tifrunner.gnm1.ann1.3J1H0B Arachis hypogaea HOM05D002370 ORTHO05D003878 6.8e-128 461.1 292 82.5
arahy.Tifrunner.gnm1.ann1.NYP183 Arachis hypogaea HOM05D002370 ORTHO05D003878 6.8e-128 461.1 292 82.5
ClCG02G007160 Citrullus lanatus HOM05D002370 ORTHO05D003878 6.8e-128 461.1 292 81.2
Sed0018886 Sechium edule HOM05D002370 ORTHO05D003878 8.9e-128 460.7 293 80.5
Dinv09531 Davidia involucrata HOM05D002370 ORTHO05D003878 1.2e-127 460.3 292 81.5
Aqoxy6G01518 Aquilegia oxysepala HOM05D002370 ORTHO05D003878 1.5e-127 459.9 287 82.9
Thhalv10011174m.g Eutrema salsugineum HOM05D002370 ORTHO05D003878 1.5e-127 459.9 292 78.4
Sp1g36890 Schrenkiella parvula HOM05D002370 ORTHO05D003878 1.5e-127 459.9 292 78.4
TAR625G0605 Trochodendron aralioides HOM05D002370 ORTHO05D003878 2.0e-127 459.5 292 81.5
Potri.001G289200 Populus trichocarpa HOM05D002370 ORTHO05D003878 4.4e-127 458.4 286 81.5
QL11p028985 Quercus lobata HOM05D002370 ORTHO05D003878 1.7e-126 456.4 280 84.3
CiPaw.06G163300 Carya illinoinensis HOM05D002370 ORTHO05D003878 2.2e-126 456.1 294 81.3
Aa31LG10G4090 Aethionema arabicum HOM05D002370 ORTHO05D003878 3.7e-126 455.3 292 78.1
Haze_10321 Corylus avellana HOM05D002370 ORTHO05D003878 4.9e-126 454.9 280 83.9
Hma1.2p1_1051F.1_g252210 Hydrangea macrophylla HOM05D002370 ORTHO05D003878 2.4e-125 452.6 293 79.2
Lj1g0008728 Lotus japonicus HOM05D002370 ORTHO05D003878 2.4e-125 452.6 294 81.3
Ca_24363_v3 Cicer arietinum L. HOM05D002370 ORTHO05D003878 9.2e-125 450.7 284 82.0
DCAR_003604 Daucus carota HOM05D002370 ORTHO05D003878 1.2e-124 450.3 292 78.8
CSS0026275 Camellia sinensis var. sinensis HOM05D002370 ORTHO05D003878 1.6e-124 449.9 293 78.8
Rhsim11G0149700 Rhododendron simsii HOM05D002370 ORTHO05D003878 1.6e-124 449.9 285 81.4
Actinidia02446 Actinidia chinensis HOM05D002370 ORTHO05D003878 3.5e-124 448.7 285 80.4
Medtr5g005380 Medicago truncatula HOM05D002370 ORTHO05D003878 4.5e-124 448.4 298 79.5
Psat4g229000 Pisum sativum HOM05D002370 ORTHO05D003878 4.5e-124 448.4 302 78.8
BraA05t20943Z Brassica rapa HOM05D002370 ORTHO05D003878 1.0e-123 447.2 285 78.9
Potri.009G084500 Populus trichocarpa HOM05D002370 ORTHO05D003878 1.0e-123 447.2 293 77.8
TPR.G8301 Trifolium pratense HOM05D002370 ORTHO05D003878 1.0e-123 447.2 298 78.9
Sabra09G0065200 Salix brachista HOM05D002370 ORTHO05D003878 1.7e-123 446.4 293 78.5
BcaC05g27452 Brassica carinata HOM05D002370 ORTHO05D003878 8.6e-123 444.1 292 76.7
A05p20360 Brassica napus HOM05D002370 ORTHO05D003878 8.6e-123 444.1 285 78.2
BolC5t32146H Brassica oleracea HOM05D002370 ORTHO05D003878 8.6e-123 444.1 292 76.7
Cc02_g20170 Coffea canephora HOM05D002370 ORTHO05D003878 1.5e-122 443.4 274 80.7
HanXRQChr04g0107251 Helianthus annuus HOM05D002370 ORTHO05D003878 1.5e-122 443.4 292 77.4
Sabra16G0181000 Salix brachista HOM05D002370 ORTHO05D003878 1.9e-122 443.0 329 71.4
ECA232G2594 Erigeron canadensis HOM05D002370 ORTHO05D003878 2.5e-122 442.6 292 77.1
Lsat_1_v5_gn_4_143680 Lactuca sativa HOM05D002370 ORTHO05D003878 2.5e-122 442.6 292 77.4
PSO675G4735 Papaver somniferum HOM05D002370 ORTHO05D003878 2.5e-122 442.6 289 78.9
MSTRG.16667 Avicennia marina HOM05D002370 ORTHO05D003878 4.3e-122 441.8 292 77.1
CARHR040140 Cardamine hirsuta HOM05D002370 ORTHO05D003878 1.2e-121 440.3 292 75.7
CiPaw.05G021600 Carya illinoinensis HOM05D002370 ORTHO05D003878 2.8e-121 439.1 300 77.3
BraA06t23548Z Brassica rapa HOM05D002370 ORTHO05D003878 4.7e-121 438.3 269 80.3
PSO541G1630 Papaver somniferum HOM05D002370 ORTHO05D003878 4.7e-121 438.3 289 78.5
SGA_v2.0_scaffold519G52682 Striga asiatica HOM05D002370 ORTHO05D003878 4.7e-121 438.3 292 75.3
A06p03390 Brassica napus HOM05D002370 ORTHO05D003878 1.0e-120 437.2 269 79.9
Solyc01g106770.4 Solanum lycopersicum HOM05D002370 ORTHO05D003878 1.8e-120 436.4 292 75.7
Sopen01g049080 Solanum pennellii HOM05D002370 ORTHO05D003878 1.8e-120 436.4 292 75.7
BcaB07g33455 Brassica carinata HOM05D002370 ORTHO05D003878 2.3e-120 436.0 269 79.9
PGSC0003DMG401025733 Solanum tuberosum HOM05D002370 ORTHO05D003878 2.3e-120 436.0 292 75.7
Peaxi162Scf00016g03243 Petunia axillaris HOM05D002370 ORTHO05D003878 4.0e-120 435.3 292 75.7
PGR142G4285 Punica granatum HOM05D002370 ORTHO05D003878 4.0e-120 435.3 285 77.9
BcaC08g43183 Brassica carinata HOM05D002370 ORTHO05D003878 5.2e-120 434.9 269 79.9
C05p34110 Brassica napus HOM05D002370 ORTHO05D003878 5.2e-120 434.9 292 76.4
BolC6t35612H Brassica oleracea HOM05D002370 ORTHO05D003878 5.2e-120 434.9 269 79.9
COL.COLO4_32473 Corchorus olitorius HOM05D002370 ORTHO05D003878 6.8e-120 434.5 242 90.5
Oeu028915.2 Olea europaea HOM05D002370 ORTHO05D003878 2.0e-119 433.0 292 75.3
DCAR_021938 Daucus carota HOM05D002370 ORTHO05D003878 4.4e-119 431.8 292 75.7
C06p04900 Brassica napus HOM05D002370 ORTHO05D003878 7.5e-119 431.0 269 79.6
Migut.B00477 Erythranthe guttata HOM05D002370 ORTHO05D003878 9.8e-119 430.6 292 74.7
HanXRQChr04g0107281 Helianthus annuus HOM05D002370 ORTHO05D003878 9.8e-119 430.6 292 75.3
CDE06G0012 Ceratophyllum demersum HOM05D002370 ORTHO05D003878 1.4e-117 426.8 298 74.5
Eucgr.I02503 Eucalyptus grandis HOM05D002370 ORTHO05D003878 1.4e-117 426.8 292 75.7
Sc18g0007320 Simmondsia chinensis HOM05D002370 ORTHO05D003878 3.2e-117 425.6 288 76.0
ATR0753G079 Amborella trichopoda HOM05D002370 ORTHO05D003878 2.7e-116 422.5 282 77.3
Nitab4.5_0000772g0070 Nicotiana tabacum HOM05D002370 ORTHO05D003878 2.7e-116 422.5 292 73.6
Nitab4.5_0010974g0020 Nicotiana tabacum HOM05D002370 ORTHO05D003878 2.7e-116 422.5 292 73.6
EL10Ac9g22169 Beta vulgaris HOM05D002370 ORTHO05D003878 6.0e-116 421.4 292 74.0
AUR62027030 Chenopodium quinoa HOM05D002370 ORTHO05D003878 3.0e-115 419.1 285 75.4
AUR62030874 Chenopodium quinoa HOM05D002370 ORTHO05D003878 3.9e-115 418.7 285 75.4
Lalb_Chr05g0210831 Lupinus albus HOM05D002370 ORTHO05D003878 3.9e-115 418.7 295 75.3
PSO675G3080 Papaver somniferum HOM05D002370 ORTHO05D003878 5.0e-115 418.3 299 73.2
PSO732G0082 Papaver somniferum HOM05D002370 ORTHO05D003878 8.6e-115 417.5 271 77.5
HPP92_016412 Vanilla planifolia HOM05D002370 ORTHO05D003878 5.6e-114 414.8 287 75.6
CAN.G1164.1 Capsicum annuum HOM05D002370 ORTHO05D003878 2.1e-108 396.4 273 74.7
Hma1.2p1_0661F.1_g197980 Hydrangea macrophylla HOM05D002370 ORTHO05D003878 3.5e-108 395.6 252 79.8
Ah.01g024560 Amaranthus hybridus HOM05D002370 ORTHO05D003878 2.5e-106 389.4 252 78.6
Gohir.A01G009566 Gossypium hirsutum HOM05D002370 ORTHO05D003878 8.9e-104 380.9 205 92.7
BcaB02g11126 Brassica carinata HOM05D002370 ORTHO05D003878 2.0e-103 379.8 292 69.5
CAN.G411.107 Capsicum annuum HOM05D002370 ORTHO05D003878 1.4e-101 373.6 271 71.6
unitig_60.g25464 Utricularia gibba HOM05D002370 ORTHO05D003878 8.6e-99 364.4 285 67.0
Os05g0235300 Oryza sativa ssp. japonica HOM05D002370 ORTHO05D003878 1.9e-98 363.2 249 75.1
Zm00001eb285840 Zea mays HOM05D002370 ORTHO05D003878 5.6e-98 361.7 260 73.1
SGA_v2.0_scaffold32G12979 Striga asiatica HOM05D002370 ORTHO05D003878 9.5e-98 360.9 236 76.3
SEGI_32787 Sequoiadendron giganteum HOM05D002370 ORTHO05D003878 6.2e-97 358.2 246 74.0
CAN.G1164.4 Capsicum annuum HOM05D002370 ORTHO05D003878 7.6e-95 351.3 236 74.2
SEGI_12344 Sequoiadendron giganteum HOM05D002370 ORTHO05D003878 9.9e-95 350.9 246 73.2
SHI03324 Sapria himalayana HOM05D002370 ORTHO05D003878 6.4e-94 348.2 245 74.7
CAN.G1627.7 Capsicum annuum HOM05D002370 ORTHO05D003878 7.1e-93 344.7 271 66.4
GSVIVG01037040001 Vitis vinifera HOM05D002370 ORTHO05D003878 4.6e-92 342.0 332 59.0
AagrBONN_evm.TU.Sc2ySwM_228.5412 Anthoceros agrestis HOM05D002370 ORTHO05D003878 6.6e-91 338.2 246 68.3
CAN.G289.59 Capsicum annuum HOM05D002370 ORTHO05D003878 1.1e-88 330.9 234 72.6
Pp3c6_4910 Physcomitrium patens HOM05D002370 ORTHO05D003878 1.9e-85 320.1 270 62.6
SMO147G0225 Selaginella moellendorffii HOM05D002370 ORTHO05D003878 3.5e-84 315.8 264 64.8
CAN.G1627.3 Capsicum annuum HOM05D002370 ORTHO05D003878 1.0e-83 314.3 226 72.1
SalBow6G1889 Salvia bowleyana HOM05D002370 ORTHO05D003878 2.5e-82 309.7 292 57.2
Mapoly0047s0119 Marchantia polymorpha HOM05D002370 ORTHO05D003878 2.6e-79 299.7 239 63.6
vmacro01937 Vaccinium macrocarpon HOM05D002370 ORTHO05D003878 2.8e-73 279.6 211 70.1
PRCOL_00002418 Prasinoderma coloniale HOM05D002370 ORTHO05D003878 1.4e-64 250.8 269 50.2
CAN.G606.79 Capsicum annuum HOM05D002370 ORTHO05D020284 6.7e-59 231.9 208 60.6
MCO06G142 Micromonas commoda HOM05D002370 ORTHO05D003878 2.5e-58 229.9 242 52.1
CBR_g23926 Chara braunii HOM05D002370 ORTHO05D003878 1.0e-54 218.0 252 47.6
CAN.G10698.1 Capsicum annuum HOM05D002370 ORTHO05D003878 1.3e-54 217.6 121 90.1
Oeu025303.1 Olea europaea HOM05D002370 ORTHO05D003878 2.9e-54 216.5 140 77.9
Cre09.g400553 Chlamydomonas reinhardtii HOM05D002370 ORTHO05D003878 8.5e-54 214.9 275 46.9
Haze_26242 Corylus avellana HOM05D002370 ORTHO05D003878 2.1e-28 130.6 246 34.6
FAN20G0378 Fragaria x ananassa HOM05D002370 ORTHO05D020284 8.0e-28 128.6 176 44.9
Cfa026368 Carpinus fangiana HOM05D002370 ORTHO05D003878 4.0e-27 126.3 249 33.7
Atru.chr5.2257 Acer truncatum HOM05D002370 ORTHO05D003878 2.4e-24 117.1 59 96.6
Lalb_Chr16g0376331 Lupinus albus HOM05D002370 ORTHO05D020284 4.5e-23 112.8 57 96.5
FAN15G0843 Fragaria x ananassa HOM05D002370 ORTHO05D003878 1.3e-22 111.3 88 70.5
CDE04G3197 Ceratophyllum demersum HOM05D002370 ORTHO05D020284 5.0e-22 109.4 66 84.8
PSO017G1105 Papaver somniferum HOM05D000352 ORTHO05D000260 2.7e-20 103.6 114 55.3
Lalb_Chr16g0376321 Lupinus albus HOM05D002370 ORTHO05D003878 3.2e-08 63.5 53 62.3
FvH4_2g06710 Fragaria vesca HOM05D002370 ORTHO05D020284 2.7e-07 60.5 49 61.2
FAN24G2034 Fragaria x ananassa HOM05D002370 ORTHO05D020284 2.7e-07 60.5 35 82.9
CAN.G289.58 Capsicum annuum HOM05D002370 ORTHO05D003878 1.0e-06 58.5 32 87.5
Lsat_1_v5_gn_5_137761 Lactuca sativa HOM05D002370 ORTHO05D020284 6.6e-06 55.8 32 84.4


User provided reference genes

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