Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cpa.g.sc106.101 Carica papaya HOM05D003735 ORTHO05D004550 7.1e-245 850.1 420 100.0
COL.COLO4_32583 Corchorus olitorius HOM05D003735 ORTHO05D004550 7.9e-212 740.3 420 83.6
Thecc.02G109200 Theobroma cacao HOM05D003735 ORTHO05D004550 6.3e-209 730.7 418 82.8
Cfa004592 Carpinus fangiana HOM05D003735 ORTHO05D004550 2.0e-207 725.7 420 82.9
Manes.07G071100 Manihot esculenta HOM05D003735 ORTHO05D004550 1.7e-206 722.6 414 82.6
Dinv15769 Davidia involucrata HOM05D003735 ORTHO05D004550 2.2e-206 722.2 417 82.0
Manes.07G071000 Manihot esculenta HOM05D003735 ORTHO05D004550 6.5e-206 720.7 415 82.9
Atru.chr5.2510 Acer truncatum HOM05D003735 ORTHO05D004550 2.5e-205 718.8 417 82.0
Duzib132G0856 Durio zibethinus HOM05D003735 ORTHO05D004550 4.2e-205 718.0 442 78.7
Gohir.D12G022000 Gossypium hirsutum HOM05D003735 ORTHO05D004550 5.5e-205 717.6 420 81.4
Gorai.008G022500 Gossypium raimondii HOM05D003735 ORTHO05D004550 5.5e-205 717.6 420 81.7
Duzib248G1182 Durio zibethinus HOM05D003735 ORTHO05D004550 9.4e-205 716.8 420 81.2
Ciclev10028518m.g Citrus clementina HOM05D003735 ORTHO05D004550 1.2e-204 716.5 417 81.8
Potri.009G094800 Populus trichocarpa HOM05D003735 ORTHO05D004550 1.6e-204 716.1 418 80.6
Gohir.A12G021500 Gossypium hirsutum HOM05D003735 ORTHO05D004550 2.7e-204 715.3 417 81.1
Manes.07G071116 Manihot esculenta HOM05D003735 ORTHO05D004550 5.2e-203 711.1 414 81.6
QL11p033367 Quercus lobata HOM05D003735 ORTHO05D004550 8.8e-203 710.3 418 80.4
Gorai.008G022400 Gossypium raimondii HOM05D003735 ORTHO05D004550 1.5e-202 709.5 420 80.7
Actinidia00406 Actinidia chinensis HOM05D003735 ORTHO05D004550 2.6e-202 708.8 417 80.8
Haze_10190 Corylus avellana HOM05D003735 ORTHO05D004550 2.6e-202 708.8 438 78.5
Dinv42198 Davidia involucrata HOM05D003735 ORTHO05D004550 3.3e-202 708.4 417 80.6
Thecc.02G109600 Theobroma cacao HOM05D003735 ORTHO05D004550 4.4e-202 708.0 437 78.7
CSS0013486 Camellia sinensis var. sinensis HOM05D003735 ORTHO05D004550 5.7e-202 707.6 420 80.2
Haze_10183 Corylus avellana HOM05D003735 ORTHO05D004550 7.5e-202 707.2 417 81.5
Potri.001G299700 Populus trichocarpa HOM05D003735 ORTHO05D004550 7.5e-202 707.2 418 81.1
MD10G1147300 Malus domestica HOM05D003735 ORTHO05D004550 9.7e-202 706.8 418 80.9
Sabra09G0073100 Salix brachista HOM05D003735 ORTHO05D004550 9.7e-202 706.8 418 80.9
CiPaw.05G012200 Carya illinoinensis HOM05D003735 ORTHO05D004550 1.7e-201 706.1 417 80.1
arahy.Tifrunner.gnm1.ann1.28YLK9 Arachis hypogaea HOM05D003735 ORTHO05D004550 2.2e-201 705.7 420 79.3
THA.LOC104825376 Tarenaya hassleriana HOM05D003735 ORTHO05D004550 2.2e-201 705.7 417 80.6
Prupe.8G136000 Prunus persica HOM05D003735 ORTHO05D004550 2.8e-201 705.3 418 80.6
MD10G1098700 Malus domestica HOM05D003735 ORTHO05D004550 4.8e-201 704.5 418 80.4
Eucgr.I01098 Eucalyptus grandis HOM05D003735 ORTHO05D004550 6.3e-201 704.1 416 79.6
arahy.Tifrunner.gnm1.ann1.SBY3PD Arachis hypogaea HOM05D003735 ORTHO05D004550 8.2e-201 703.7 420 79.0
Sabra09G0072900 Salix brachista HOM05D003735 ORTHO05D004550 8.2e-201 703.7 418 80.4
Rhsim11G0159300 Rhododendron simsii HOM05D003735 ORTHO05D004550 1.4e-200 703.0 417 79.9
BolC6t35561H Brassica oleracea HOM05D003735 ORTHO05D004550 1.8e-200 702.6 416 79.6
C06p04320 Brassica napus HOM05D003735 ORTHO05D004550 3.1e-200 701.8 416 79.6
BcaC08g43148 Brassica carinata HOM05D003735 ORTHO05D004550 4.1e-200 701.4 416 79.6
GSVIVG01037915001 Vitis vinifera HOM05D003735 ORTHO05D004550 7.0e-200 700.7 420 80.0
Hma1.2p1_0796F.1_g219280 Hydrangea macrophylla HOM05D003735 ORTHO05D004550 9.1e-200 700.3 420 79.5
CiPaw.05G012300 Carya illinoinensis HOM05D003735 ORTHO05D004550 1.2e-199 699.9 417 79.4
Rhsim11G0159400 Rhododendron simsii HOM05D003735 ORTHO05D004550 1.6e-199 699.5 417 79.4
RcHm_v2.0_Chr6g0254911 Rosa chinensis HOM05D003735 ORTHO05D004550 4.5e-199 698.0 418 78.7
TPR.G3239 Trifolium pratense HOM05D003735 ORTHO05D004550 4.5e-199 698.0 414 78.5
A06p03780 Brassica napus HOM05D003735 ORTHO05D004550 1.0e-198 696.8 416 79.1
BraA06t23583Z Brassica rapa HOM05D003735 ORTHO05D004550 1.0e-198 696.8 416 78.8
FvH4_2g05040 Fragaria vesca HOM05D003735 ORTHO05D004550 1.7e-198 696.0 418 78.7
Glyma.20G129700 Glycine max HOM05D003735 ORTHO05D004550 3.8e-198 694.9 416 79.8
RcHm_v2.0_Chr2g0122061 Rosa chinensis HOM05D003735 ORTHO05D004550 5.0e-198 694.5 418 78.7
VMungo0720G1863 Vigna mungo HOM05D003735 ORTHO05D004550 8.5e-198 693.7 416 78.8
Glyma.10G261300 Glycine max HOM05D003735 ORTHO05D004550 1.1e-197 693.3 416 78.8
Lj9A323T50 Lonicera japonica HOM05D003735 ORTHO05D004550 1.9e-197 692.6 419 78.5
Lalb_Chr02g0145261 Lupinus albus HOM05D003735 ORTHO05D004550 2.5e-197 692.2 416 78.6
Solyc01g107550.3 Solanum lycopersicum HOM05D003735 ORTHO05D004550 2.5e-197 692.2 418 78.7
PGR142G3714 Punica granatum HOM05D003735 ORTHO05D004550 3.2e-197 691.8 418 77.8
TWI75G1082 Tripterygium wilfordii HOM05D003735 ORTHO05D004550 5.5e-197 691.0 418 78.7
Sp1g36700 Schrenkiella parvula HOM05D003735 ORTHO05D004550 7.2e-197 690.6 416 78.6
CARHR039880 Cardamine hirsuta HOM05D003735 ORTHO05D004550 9.4e-197 690.3 417 78.7
Phvul.007G040800 Phaseolus vulgaris HOM05D003735 ORTHO05D004550 9.4e-197 690.3 416 78.6
ClCG05G010320 Citrullus lanatus HOM05D003735 ORTHO05D004550 1.2e-196 689.9 418 78.2
FAN24G3115 Fragaria x ananassa HOM05D003735 ORTHO05D004550 1.2e-196 689.9 418 77.8
Nitab4.5_0011634g0020 Nicotiana tabacum HOM05D003735 ORTHO05D004550 1.2e-196 689.9 431 77.5
Peaxi162Scf00016g02426 Petunia axillaris HOM05D003735 ORTHO05D004550 1.2e-196 689.9 416 78.6
Sopen01g049750 Solanum pennellii HOM05D003735 ORTHO05D004550 1.2e-196 689.9 418 78.5
Medtr1g107235 Medicago truncatula HOM05D003735 ORTHO05D004550 1.6e-196 689.5 414 78.5
SalBow3G2544 Salvia bowleyana HOM05D003735 ORTHO05D004550 1.6e-196 689.5 417 77.5
Migut.N01162 Erythranthe guttata HOM05D003735 ORTHO05D004550 2.1e-196 689.1 420 76.9
Lj5g0001181 Lotus japonicus HOM05D003735 ORTHO05D004550 2.7e-196 688.7 416 77.4
EL10Ac9g22264 Beta vulgaris HOM05D003735 ORTHO05D004550 3.6e-196 688.3 415 78.3
PGSC0003DMG400025861 Solanum tuberosum HOM05D003735 ORTHO05D004550 4.7e-196 688.0 418 78.2
Thhalv10011522m.g Eutrema salsugineum HOM05D003735 ORTHO05D004550 1.0e-195 686.8 416 78.4
FAN20G1457 Fragaria x ananassa HOM05D003735 ORTHO05D004550 1.0e-195 686.8 434 75.8
TWI79G0069 Tripterygium wilfordii HOM05D003735 ORTHO05D004550 1.0e-195 686.8 418 77.5
MELO3C019550.2 Cucumis melo HOM05D003735 ORTHO05D004550 1.4e-195 686.4 418 76.8
Cc02_g19320 Coffea canephora HOM05D003735 ORTHO05D004550 1.8e-195 686.0 416 78.4
AT1G49820 Arabidopsis thaliana HOM05D003735 ORTHO05D004550 2.3e-195 685.6 418 78.7
CANSAT25G2742 Cannabis sativa HOM05D003735 ORTHO05D004550 3.0e-195 685.3 418 76.6
Hund06312 Selenicereus undatus HOM05D003735 ORTHO05D004550 3.0e-195 685.3 415 78.3
vmacro01999 Vaccinium macrocarpon HOM05D003735 ORTHO05D004550 3.0e-195 685.3 437 76.7
Ca_11068_v3 Cicer arietinum L. HOM05D003735 ORTHO05D004550 4.0e-195 684.9 416 76.9
arahy.Tifrunner.gnm1.ann1.HR3ZI9 Arachis hypogaea HOM05D003735 ORTHO05D004550 5.2e-195 684.5 416 77.2
FAN15G3608 Fragaria x ananassa HOM05D003735 ORTHO05D004550 5.2e-195 684.5 434 75.8
BcaB07g33662 Brassica carinata HOM05D003735 ORTHO05D004550 6.8e-195 684.1 417 77.5
Carub.0001s3903 Capsella rubella HOM05D003735 ORTHO05D004550 6.8e-195 684.1 416 78.8
FAN27G1495 Fragaria x ananassa HOM05D003735 ORTHO05D004550 1.2e-194 683.3 434 75.6
CAN.G606.4 Capsicum annuum HOM05D003735 ORTHO05D004550 2.0e-194 682.6 417 77.9
AUR62025585 Chenopodium quinoa HOM05D003735 ORTHO05D004550 2.0e-194 682.6 415 77.8
CsaV3_3G018170 Cucumis sativus L. HOM05D003735 ORTHO05D004550 2.6e-194 682.2 418 76.1
Phvul.007G040700 Phaseolus vulgaris HOM05D003735 ORTHO05D004550 3.4e-194 681.8 416 77.6
Psat6g217600 Pisum sativum HOM05D003735 ORTHO05D004550 4.4e-194 681.4 414 76.8
Nn5g30431 Nelumbo nucifera HOM05D003735 ORTHO05D004550 7.5e-194 680.6 412 76.7
Prupe.7G233900 Prunus persica HOM05D003735 ORTHO05D004550 1.3e-193 679.9 415 77.3
SGA_v2.0_scaffold393G50713 Striga asiatica HOM05D003735 ORTHO05D004550 1.7e-193 679.5 420 75.5
Gohir.D12G022100 Gossypium hirsutum HOM05D003735 ORTHO05D004550 4.8e-193 677.9 420 78.1
MSTRG.5338 Avicennia marina HOM05D003735 ORTHO05D004550 1.4e-192 676.4 415 76.9
AUR62039068 Chenopodium quinoa HOM05D003735 ORTHO05D004550 1.8e-192 676.0 416 77.2
Aa31LG10G4250 Aethionema arabicum HOM05D003735 ORTHO05D004550 3.1e-192 675.2 416 77.2
AL1G57300 Arabidopsis lyrata HOM05D003735 ORTHO05D004550 3.1e-192 675.2 416 77.9
GSVIVG01037913001 Vitis vinifera HOM05D003735 ORTHO05D004550 1.2e-191 673.3 420 76.9
arahy.Tifrunner.gnm1.ann1.678ZZJ Arachis hypogaea HOM05D003735 ORTHO05D004550 7.7e-191 670.6 449 71.9
AUR62001369 Chenopodium quinoa HOM05D003735 ORTHO05D004550 1.7e-190 669.5 415 76.6
Psat6g217400 Pisum sativum HOM05D003735 ORTHO05D004550 1.7e-190 669.5 415 74.2
Ca_11064_v3 Cicer arietinum L. HOM05D003735 ORTHO05D004550 3.2e-189 665.2 416 74.0
DCAR_021982 Daucus carota HOM05D003735 ORTHO05D004550 1.6e-188 662.9 416 75.7
Oeu029527.5 Olea europaea HOM05D003735 ORTHO05D004550 2.1e-188 662.5 459 69.7
MBI16_g19654_MAGBIO Magnolia biondii HOM05D003735 ORTHO05D004550 2.6e-186 655.6 405 77.8
MSTRG.27746 Avicennia marina HOM05D003735 ORTHO05D004550 1.3e-185 653.3 415 72.5
MD10G1098200 Malus domestica HOM05D003735 ORTHO05D004550 1.7e-185 652.9 418 75.4
Os04g0669800 Oryza sativa ssp. japonica HOM05D003735 ORTHO05D004550 1.4e-184 649.8 414 73.7
HPP92_011617 Vanilla planifolia HOM05D003735 ORTHO05D004550 1.6e-183 646.4 412 74.5
HanXRQChr10g0296961 Helianthus annuus HOM05D003735 ORTHO05D004550 1.7e-182 642.9 406 73.9
Os04g0669900 Oryza sativa ssp. japonica HOM05D003735 ORTHO05D004550 1.7e-182 642.9 415 73.0
Lalb_Chr09g0319561 Lupinus albus HOM05D003735 ORTHO05D004550 8.6e-182 640.6 420 72.9
Oeu013756.1 Olea europaea HOM05D003735 ORTHO05D004550 8.6e-182 640.6 498 63.7
Lsat_1_v5_gn_5_115400 Lactuca sativa HOM05D003735 ORTHO05D004550 1.5e-181 639.8 411 74.2
TPR.G19078 Trifolium pratense HOM05D003735 ORTHO05D004550 1.2e-180 636.7 421 72.2
CSS0020963 Camellia sinensis var. sinensis HOM05D003735 ORTHO05D004550 6.1e-180 634.4 420 73.3
unitig_747.g21222 Utricularia gibba HOM05D003735 ORTHO05D004550 8.0e-180 634.0 413 72.4
Zm00001eb433310 Zea mays HOM05D003735 ORTHO05D004550 8.0e-180 634.0 416 71.6
Ah.01g018310 Amaranthus hybridus HOM05D003735 ORTHO05D004550 3.0e-179 632.1 419 73.0
PSO675G8377 Papaver somniferum HOM05D003735 ORTHO05D004550 1.2e-178 630.2 417 73.6
CSS0002879 Camellia sinensis var. sinensis HOM05D003735 ORTHO05D004550 2.0e-178 629.4 363 81.8
ECA234G0132 Erigeron canadensis HOM05D003735 ORTHO05D004550 1.3e-177 626.7 413 72.4
PSO541G1406 Papaver somniferum HOM05D003735 ORTHO05D004550 1.8e-176 622.9 417 73.6
CDE02G0578 Ceratophyllum demersum HOM05D003735 ORTHO05D004550 5.4e-176 621.3 420 69.8
Lj9C323T5 Lonicera japonica HOM05D003735 ORTHO05D004550 4.6e-175 618.2 370 79.2
RcHm_v2.0_Chr6g0254921 Rosa chinensis HOM05D003735 ORTHO05D004550 2.1e-172 609.4 363 77.7
VMungo1215G1247 Vigna mungo HOM05D003735 ORTHO05D004550 3.6e-172 608.6 421 67.5
ATR0589G073 Amborella trichopoda HOM05D003735 ORTHO05D004550 8.0e-172 607.4 411 69.8
BcaC08g43149 Brassica carinata HOM05D003735 ORTHO05D004550 7.5e-170 600.9 416 71.4
ECA232G2787 Erigeron canadensis HOM05D003735 ORTHO05D004550 7.5e-170 600.9 413 69.0
Eucgr.I01100 Eucalyptus grandis HOM05D003735 ORTHO05D004550 4.6e-167 591.7 341 81.5
Sed0001414 Sechium edule HOM05D003735 ORTHO05D004550 1.1e-165 587.0 360 76.1
TPR.G3238 Trifolium pratense HOM05D003735 ORTHO05D004550 1.1e-163 580.5 341 79.8
SMO340G0152 Selaginella moellendorffii HOM05D003735 ORTHO05D004550 9.2e-160 567.4 415 64.3
Pp3c6_19060 Physcomitrium patens HOM05D003735 ORTHO05D004550 1.6e-151 540.0 413 61.0
vmacro01998 Vaccinium macrocarpon HOM05D003735 ORTHO05D004550 7.3e-149 531.2 437 62.5
DCAR_001652 Daucus carota HOM05D003735 ORTHO05D004550 1.7e-145 520.0 416 61.5
Mapoly0029s0020 Marchantia polymorpha HOM05D003735 ORTHO05D004550 2.2e-145 519.6 411 60.6
AagrBONN_evm.TU.Sc2ySwM_344.2850 Anthoceros agrestis HOM05D003735 ORTHO05D004550 1.4e-144 516.9 407 61.2
AUR62010319 Chenopodium quinoa HOM05D003735 ORTHO05D004550 3.2e-136 489.2 342 69.0
Cfa004590 Carpinus fangiana HOM05D003735 ORTHO05D004550 5.4e-136 488.4 301 78.1
CBR_g23696 Chara braunii HOM05D003735 ORTHO05D004550 6.0e-135 485.0 430 56.3
arahy.Tifrunner.gnm1.ann1.TAI6X1 Arachis hypogaea HOM05D003735 ORTHO05D004550 3.2e-128 462.6 315 72.4
QL11p033306 Quercus lobata HOM05D003735 ORTHO05D004550 1.9e-125 453.4 302 75.5
QL11p033359 Quercus lobata HOM05D003735 ORTHO05D004550 9.3e-112 407.9 223 85.2
Peaxi162Scf00152g00332 Petunia axillaris HOM05D003735 ORTHO05D004550 1.5e-109 400.6 291 68.7
CBR_g12222 Chara braunii HOM05D003735 ORTHO05D004550 1.7e-105 387.1 501 41.7
arahy.Tifrunner.gnm1.ann1.Z6IW8Q Arachis hypogaea HOM05D003735 ORTHO05D004550 7.2e-104 381.7 235 76.6
PRCOL_00000373 Prasinoderma coloniale HOM05D003735 ORTHO05D006943 3.0e-102 376.3 406 48.5
Cre16.g673550 Chlamydomonas reinhardtii HOM05D003735 ORTHO05D007494 6.7e-102 375.2 399 47.9
MCO11G261 Micromonas commoda HOM05D003735 ORTHO05D007494 1.5e-98 364.0 426 44.8
Glyma.01G244200 Glycine max HOM05D003735 ORTHO05D004550 3.9e-94 349.4 244 66.8
Nitab4.5_0026736g0020 Nicotiana tabacum HOM05D003735 ORTHO05D004550 8.8e-94 348.2 198 80.8
Nitab4.5_0001143g0070 Nicotiana tabacum HOM05D003735 ORTHO05D004550 3.7e-92 342.8 198 79.3
Cc02_g18410 Coffea canephora HOM05D003735 ORTHO05D004550 8.8e-78 295.0 221 66.5
arahy.Tifrunner.gnm1.ann1.83SMNU Arachis hypogaea HOM05D003735 ORTHO05D004550 6.5e-73 278.9 216 67.1
Hma1.2p1_1023F.1_g249070 Hydrangea macrophylla HOM05D003735 ORTHO05D004550 1.7e-65 254.2 258 53.1
Cc01_g17410 Coffea canephora HOM05D003735 ORTHO05D004550 6.6e-65 252.3 174 69.0
ATR0589G120 Amborella trichopoda HOM05D003735 ORTHO05D004550 2.8e-63 246.9 160 72.5
arahy.Tifrunner.gnm1.ann1.B546P6 Arachis hypogaea HOM05D003735 ORTHO05D004550 1.4e-59 234.6 151 74.2
Glyma.01G244132 Glycine max HOM05D003735 ORTHO05D004550 2.0e-58 230.7 155 71.6
Ciclev10029480m.g Citrus clementina HOM05D003735 ORTHO05D004550 1.3e-57 228.0 178 63.5
Gorai.013G047300 Gossypium raimondii HOM05D003735 ORTHO05D004550 6.2e-55 219.2 181 60.8
Gohir.A13G043900 Gossypium hirsutum HOM05D003735 ORTHO05D004550 8.9e-54 215.3 339 39.8
Peaxi162Scf00152g00233 Petunia axillaris HOM05D003735 ORTHO05D004550 8.9e-54 215.3 229 52.0
QL11p033356 Quercus lobata HOM05D003735 ORTHO05D004550 2.0e-53 214.2 128 79.7
ATR0589G125 Amborella trichopoda HOM05D003735 ORTHO05D004550 1.2e-50 204.9 124 77.4
Gohir.D13G042333 Gossypium hirsutum HOM05D003735 ORTHO05D004550 4.6e-50 203.0 342 39.2
Nitab4.5_0001143g0030 Nicotiana tabacum HOM05D003735 ORTHO05D004550 3.0e-49 200.3 121 73.6
Aqoxy6G02845 Aquilegia oxysepala HOM05D003735 ORTHO05D004550 1.8e-46 191.0 127 70.9
ATR0589G028 Amborella trichopoda HOM05D003735 ORTHO05D004550 6.8e-38 162.5 122 60.7
TAR376G0098 Trochodendron aralioides HOM05D003735 ORTHO05D004550 5.4e-35 152.9 95 72.6
Gorai.013G047400 Gossypium raimondii HOM05D003735 ORTHO05D004550 1.1e-30 138.7 128 57.0
TPR.G20408 Trifolium pratense HOM05D003735 ORTHO05D004550 1.4e-27 128.3 88 71.6
MBI14_g39937_MAGBIO Magnolia biondii HOM05D003735 ORTHO05D022889 9.3e-27 125.6 66 84.8
Nn4g25342 Nelumbo nucifera HOM05D003735 ORTHO05D004550 1.5e-24 118.2 70 78.6
TPR.G31649 Trifolium pratense HOM05D000067 ORTHO05D000097 2.4e-14 84.3 87 44.8
TPR.G13570 Trifolium pratense HOM05D003735 ORTHO05D004354 5.3e-14 83.2 87 44.8
Aqoxy6G02846 Aquilegia oxysepala HOM05D003735 ORTHO05D004550 6.9e-14 82.8 57 63.2
ATR0589G078 Amborella trichopoda HOM05D003735 ORTHO05D004550 2.5e-11 74.3 59 62.7
BcaC08g43052 Brassica carinata HOM05D003735 ORTHO05D004550 1.8e-09 68.2 58 53.4
Sabra16G0188100 Salix brachista HOM05D003735 ORTHO05D349252 1.3e-07 62.0 35 74.3


User provided reference genes

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