Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cpa.g.sc1059.3 Carica papaya HOM05D005146 ORTHO05D006752 2.5e-158 562.0 275 100.0
GSVIVG01009887001 Vitis vinifera HOM05D005146 ORTHO05D006752 6.1e-136 487.6 273 86.8
QL02p011373 Quercus lobata HOM05D005146 ORTHO05D006752 3.0e-135 485.3 273 85.0
Atru.chr13.312 Acer truncatum HOM05D005146 ORTHO05D006752 3.3e-134 481.9 272 86.8
CiPaw.07G151400 Carya illinoinensis HOM05D005146 ORTHO05D006752 9.7e-134 480.3 273 84.2
Manes.05G148600 Manihot esculenta HOM05D005146 ORTHO05D006752 1.7e-133 479.6 273 85.3
Gohir.D08G020900 Gossypium hirsutum HOM05D005146 ORTHO05D006752 2.8e-133 478.8 272 85.3
Manes.11G065850 Manihot esculenta HOM05D005146 ORTHO05D006752 3.7e-133 478.4 273 85.0
THA.LOC104825772 Tarenaya hassleriana HOM05D005146 ORTHO05D006752 3.7e-133 478.4 272 84.2
Thecc.09G245400 Theobroma cacao HOM05D005146 ORTHO05D006752 3.7e-133 478.4 273 84.6
Gohir.A08G010500 Gossypium hirsutum HOM05D005146 ORTHO05D006752 6.3e-133 477.6 272 84.9
Potri.002G023700 Populus trichocarpa HOM05D005146 ORTHO05D006752 6.3e-133 477.6 273 83.5
TWI56G0936 Tripterygium wilfordii HOM05D005146 ORTHO05D006752 8.2e-133 477.2 272 84.6
PSO700G0287 Papaver somniferum HOM05D005146 ORTHO05D006752 1.1e-132 476.9 274 81.8
Eucgr.F01641 Eucalyptus grandis HOM05D005146 ORTHO05D006752 1.4e-132 476.5 272 82.0
Ciclev10002090m.g Citrus clementina HOM05D005146 ORTHO05D006752 2.4e-132 475.7 272 84.9
MD15G1013600 Malus domestica HOM05D005146 ORTHO05D006752 2.4e-132 475.7 271 83.0
TPR.G34539 Trifolium pratense HOM05D005146 ORTHO05D006752 3.1e-132 475.3 273 81.7
DCAR_009928 Daucus carota HOM05D005146 ORTHO05D006752 1.2e-131 473.4 270 83.0
Sabra02G0019300 Salix brachista HOM05D005146 ORTHO05D006752 1.2e-131 473.4 273 82.8
PSO170G4907 Papaver somniferum HOM05D005146 ORTHO05D006752 1.5e-131 473.0 274 81.4
Nn6g32362 Nelumbo nucifera HOM05D005146 ORTHO05D006752 2.0e-131 472.6 274 82.1
Medtr3g113750 Medicago truncatula HOM05D005146 ORTHO05D006752 2.6e-131 472.2 273 82.4
Cc10_g01800 Coffea canephora HOM05D005146 ORTHO05D006752 3.5e-131 471.9 274 83.6
CANSAT11G0704 Cannabis sativa HOM05D005146 ORTHO05D006752 4.5e-131 471.5 272 81.6
Solyc04g081310.3 Solanum lycopersicum HOM05D005146 ORTHO05D006752 4.5e-131 471.5 272 83.1
Sopen04g034930 Solanum pennellii HOM05D005146 ORTHO05D006752 4.5e-131 471.5 272 83.1
Nitab4.5_0001540g0020 Nicotiana tabacum HOM05D005146 ORTHO05D006752 7.7e-131 470.7 272 83.1
RcHm_v2.0_Chr6g0302671 Rosa chinensis HOM05D005146 ORTHO05D006752 7.7e-131 470.7 271 82.7
Prupe.1G367100 Prunus persica HOM05D005146 ORTHO05D006752 1.0e-130 470.3 274 81.0
PGSC0003DMG400003775 Solanum tuberosum HOM05D005146 ORTHO05D006752 1.0e-130 470.3 272 82.7
Aa31LG2G18510 Aethionema arabicum HOM05D005146 ORTHO05D006752 1.3e-130 469.9 274 83.9
Rhsim06G0022400 Rhododendron simsii HOM05D005146 ORTHO05D006752 1.3e-130 469.9 272 83.1
Cfa006669 Carpinus fangiana HOM05D005146 ORTHO05D006752 1.7e-130 469.5 273 83.2
Haze_04102 Corylus avellana HOM05D005146 ORTHO05D006752 1.7e-130 469.5 273 82.8
CAN.G311.14 Capsicum annuum HOM05D005146 ORTHO05D006752 2.9e-130 468.8 272 82.4
FAN27G1976 Fragaria x ananassa HOM05D005146 ORTHO05D006752 1.5e-129 466.5 271 82.3
BcaC09g51970 Brassica carinata HOM05D005146 ORTHO05D006752 1.9e-129 466.1 272 83.1
BolC1t00708H Brassica oleracea HOM05D005146 ORTHO05D006752 1.9e-129 466.1 272 83.1
PGR083G0855 Punica granatum HOM05D005146 ORTHO05D006752 2.5e-129 465.7 273 80.6
C01p07160 Brassica napus HOM05D005146 ORTHO05D006752 3.2e-129 465.3 272 83.1
ECA238G2776 Erigeron canadensis HOM05D005146 ORTHO05D006752 3.2e-129 465.3 271 81.5
BcaNung05185 Brassica carinata HOM05D005146 ORTHO05D006752 4.2e-129 464.9 272 82.7
FvH4_2g38650 Fragaria vesca HOM05D005146 ORTHO05D006752 4.2e-129 464.9 271 81.9
BraA01t00610Z Brassica rapa HOM05D005146 ORTHO05D006752 5.5e-129 464.5 272 82.7
FAN15G2679 Fragaria x ananassa HOM05D005146 ORTHO05D006752 5.5e-129 464.5 271 81.9
Dinv31832 Davidia involucrata HOM05D005146 ORTHO05D006752 7.2e-129 464.2 272 81.2
Glyma.20G014100 Glycine max HOM05D005146 ORTHO05D006752 9.4e-129 463.8 273 82.1
Psat5g013440 Pisum sativum HOM05D005146 ORTHO05D006752 9.4e-129 463.8 273 80.2
Sp7g29580 Schrenkiella parvula HOM05D005146 ORTHO05D006752 9.4e-129 463.8 272 82.7
Actinidia15413 Actinidia chinensis HOM05D005146 ORTHO05D006752 1.2e-128 463.4 272 81.6
MD08G1014100 Malus domestica HOM05D005146 ORTHO05D006752 1.2e-128 463.4 271 80.4
Carub.0007s0877 Capsella rubella HOM05D005146 ORTHO05D006752 1.6e-128 463.0 272 82.7
FAN20G2808 Fragaria x ananassa HOM05D005146 ORTHO05D006752 1.6e-128 463.0 271 81.9
CARHR239690 Cardamine hirsuta HOM05D005146 ORTHO05D006752 2.1e-128 462.6 274 82.5
Phvul.001G002400 Phaseolus vulgaris HOM05D005146 ORTHO05D006752 2.1e-128 462.6 273 81.7
VMungo0251G0853 Vigna mungo HOM05D005146 ORTHO05D006752 2.1e-128 462.6 273 81.3
A01p06490 Brassica napus HOM05D005146 ORTHO05D006752 2.7e-128 462.2 272 82.4
Migut.N03153 Erythranthe guttata HOM05D005146 ORTHO05D006752 2.7e-128 462.2 272 80.9
Lalb_Chr23g0266181 Lupinus albus HOM05D005146 ORTHO05D006752 3.6e-128 461.8 271 80.8
AT4G31790 Arabidopsis thaliana HOM05D005146 ORTHO05D006752 4.7e-128 461.5 274 82.1
Lsat_1_v5_gn_2_8601 Lactuca sativa HOM05D005146 ORTHO05D006752 8.0e-128 460.7 271 80.4
AL7G20220 Arabidopsis lyrata HOM05D005146 ORTHO05D006752 1.0e-127 460.3 274 82.1
Thhalv10025950m.g Eutrema salsugineum HOM05D005146 ORTHO05D006752 1.4e-127 459.9 274 82.1
Glyma.07G217500 Glycine max HOM05D005146 ORTHO05D006752 1.4e-127 459.9 273 81.0
CsaV3_2G029420 Cucumis sativus L. HOM05D005146 ORTHO05D006752 1.8e-127 459.5 271 80.8
Ca_14210_v3 Cicer arietinum L. HOM05D005146 ORTHO05D006752 3.9e-127 458.4 273 80.2
arahy.Tifrunner.gnm1.ann1.DQ6KFY Arachis hypogaea HOM05D005146 ORTHO05D006752 1.1e-126 456.8 273 80.6
Sed0001191 Sechium edule HOM05D005146 ORTHO05D006752 1.5e-126 456.4 271 79.7
CSS0007392 Camellia sinensis var. sinensis HOM05D005146 ORTHO05D006752 2.6e-126 455.7 272 81.6
CSS0032974 Camellia sinensis var. sinensis HOM05D005146 ORTHO05D006752 2.6e-126 455.7 272 81.6
SGA_v2.0_scaffold12G05971 Striga asiatica HOM05D005146 ORTHO05D006752 2.6e-126 455.7 272 80.5
arahy.Tifrunner.gnm1.ann1.VN499F Arachis hypogaea HOM05D005146 ORTHO05D006752 3.3e-126 455.3 273 80.6
arahy.Tifrunner.gnm1.ann1.RM6BI2 Arachis hypogaea HOM05D005146 ORTHO05D006752 1.3e-125 453.4 273 79.5
HanXRQChr06g0183611 Helianthus annuus HOM05D005146 ORTHO05D006752 4.8e-125 451.4 271 78.6
COL.COLO4_37538 Corchorus olitorius HOM05D005146 ORTHO05D006752 1.1e-124 450.3 257 84.8
Lj1g0002754 Lotus japonicus HOM05D005146 ORTHO05D006752 1.8e-124 449.5 273 79.9
Oeu020876.1 Olea europaea HOM05D005146 ORTHO05D006752 3.1e-124 448.7 262 82.8
Hund05199 Selenicereus undatus HOM05D005146 ORTHO05D006752 9.1e-124 447.2 275 76.4
Aqoxy5G01768 Aquilegia oxysepala HOM05D005146 ORTHO05D006752 1.2e-123 446.8 274 76.3
ATR0797G002 Amborella trichopoda HOM05D005146 ORTHO05D006752 1.6e-123 446.4 273 77.3
Ah.08g209140 Amaranthus hybridus HOM05D005146 ORTHO05D006752 2.0e-123 446.0 307 72.0
HPP92_027733 Vanilla planifolia HOM05D005146 ORTHO05D006752 2.6e-123 445.7 273 76.6
Os03g0355800 Oryza sativa ssp. japonica HOM05D005146 ORTHO05D006752 5.9e-123 444.5 273 76.9
unitig_746.g26814 Utricularia gibba HOM05D005146 ORTHO05D006752 1.3e-122 443.4 274 77.4
EL10Ac6g13895 Beta vulgaris HOM05D005146 ORTHO05D006752 3.8e-122 441.8 309 71.2
Duzib150G0501 Durio zibethinus HOM05D005146 ORTHO05D006752 5.0e-122 441.4 272 80.9
Zm00001eb017150 Zea mays HOM05D005146 ORTHO05D006752 4.2e-121 438.3 273 75.8
AUR62019460 Chenopodium quinoa HOM05D005146 ORTHO05D006752 5.5e-121 438.0 275 77.5
Lj5g0000481 Lotus japonicus HOM05D005146 ORTHO05D006752 1.6e-120 436.4 273 77.7
arahy.Tifrunner.gnm1.ann1.NX94TN Arachis hypogaea HOM05D005146 ORTHO05D006752 2.7e-120 435.6 303 71.3
Aqoxy6G00492 Aquilegia oxysepala HOM05D005146 ORTHO05D006752 1.0e-119 433.7 264 75.8
Gorai.004G015300 Gossypium raimondii HOM05D005146 ORTHO05D006752 3.0e-119 432.2 273 78.0
ClCG08G014400 Citrullus lanatus HOM05D005146 ORTHO05D006752 3.7e-117 425.2 271 75.6
Mapoly0107s0028 Marchantia polymorpha HOM05D005146 ORTHO05D006752 5.4e-116 421.4 271 73.4
MBI09_g15694_MAGBIO Magnolia biondii HOM05D005146 ORTHO05D006752 1.7e-114 416.4 384 57.3
Peaxi162Scf00438g00626 Petunia axillaris HOM05D005146 ORTHO05D006752 1.5e-113 413.3 272 75.0
MELO3C011001.2 Cucumis melo HOM05D005146 ORTHO05D006752 2.5e-113 412.5 283 72.4
AagrBONN_evm.TU.Sc2ySwM_117.1420 Anthoceros agrestis HOM05D005146 ORTHO05D006752 4.2e-113 411.8 271 70.8
SalBow3G2629 Salvia bowleyana HOM05D005146 ORTHO05D006752 4.7e-112 408.3 242 79.3
AagrBONN_evm.TU.Sc2ySwM_368.2751 Anthoceros agrestis HOM05D005146 ORTHO05D006752 2.0e-110 402.9 271 70.1
Pp3c25_4490 Physcomitrium patens HOM05D005146 ORTHO05D006752 2.6e-110 402.5 271 68.6
HPP92_026026 Vanilla planifolia HOM05D005146 ORTHO05D006752 1.7e-109 399.8 247 76.5
CDE05G1835 Ceratophyllum demersum HOM05D005146 ORTHO05D006752 1.4e-108 396.7 243 77.0
vmacro21720 Vaccinium macrocarpon HOM05D005146 ORTHO05D006752 9.1e-108 394.0 222 84.2
RcHm_v2.0_Chr7g0221331 Rosa chinensis HOM05D005146 ORTHO05D006752 1.8e-103 379.8 271 69.4
Hma1.2p1_0638F.1_g193760 Hydrangea macrophylla HOM05D005146 ORTHO05D006752 6.8e-103 377.9 223 81.2
SMO146G0393 Selaginella moellendorffii HOM05D005146 ORTHO05D006752 6.8e-103 377.9 271 66.1
CSS0032399 Camellia sinensis var. sinensis HOM05D005146 ORTHO05D006752 2.0e-99 366.3 251 73.7
CBR_g41468 Chara braunii HOM05D005146 ORTHO05D006752 2.0e-99 366.3 272 65.4
Cre05.g233300 Chlamydomonas reinhardtii HOM05D005146 ORTHO05D006752 9.5e-97 357.5 274 62.8
TAR628G0140 Trochodendron aralioides HOM05D005146 ORTHO05D006752 8.0e-96 354.4 197 86.3
Lsat_1_v5_gn_2_8681 Lactuca sativa HOM05D004999 ORTHO05D007513 2.6e-94 349.4 221 76.0
MCO08G273 Micromonas commoda HOM05D005146 ORTHO05D006752 2.7e-91 339.3 273 58.2
PRCOL_00004436 Prasinoderma coloniale HOM05D005146 ORTHO05D006752 1.7e-90 336.7 292 58.9
BolC8t49001H Brassica oleracea HOM05D005146 ORTHO05D006752 1.9e-89 333.2 271 63.8
C08p13630 Brassica napus HOM05D005146 ORTHO05D006752 7.3e-89 331.3 271 63.5
C09p44220 Brassica napus HOM05D005146 ORTHO05D006752 2.1e-88 329.7 272 62.5
BcaC04g20385 Brassica carinata HOM05D005146 ORTHO05D006752 8.6e-82 307.8 273 59.7
Sc26g0004380 Simmondsia chinensis HOM05D005146 ORTHO05D006752 1.9e-81 306.6 181 79.0
Haze_26822 Corylus avellana HOM05D005146 ORTHO05D006752 1.7e-77 293.5 276 51.1
BcaC04g20389 Brassica carinata HOM05D005146 ORTHO05D006752 7.1e-76 288.1 272 56.2
ATR0816G001 Amborella trichopoda HOM05D005146 ORTHO05D006752 1.2e-75 287.3 168 82.1
Oeu039057.1 Olea europaea HOM05D005146 ORTHO05D006752 2.1e-75 286.6 240 63.8
MSTRG.25237 Avicennia marina HOM05D005146 ORTHO05D006752 1.1e-68 264.2 152 80.3
Lj4A797T61 Lonicera japonica HOM05D005146 ORTHO05D006752 2.4e-68 263.1 152 84.9
Medtr1g107520 Medicago truncatula HOM05D005146 ORTHO05D006752 1.0e-66 257.7 165 77.6
AUR62036170 Chenopodium quinoa HOM05D005146 ORTHO05D006752 3.8e-61 239.2 211 60.2
BcaC04g20387 Brassica carinata HOM05D005146 ORTHO05D006752 2.0e-54 216.9 273 48.4
Duzib170G0783 Durio zibethinus HOM05D005146 ORTHO05D006752 1.3e-53 214.2 273 46.9
BolC9t57294H Brassica oleracea HOM05D005146 ORTHO05D006752 1.1e-52 211.1 154 68.8
CSS0002428 Camellia sinensis var. sinensis HOM05D005146 ORTHO05D006752 1.9e-49 200.3 272 46.3
MELO3C029148.2 Cucumis melo HOM05D005146 ORTHO05D006752 6.5e-45 185.3 180 55.6
Medtr3g114210 Medicago truncatula HOM05D005146 ORTHO05D006752 1.8e-39 167.2 159 60.4
Lj4A797T60 Lonicera japonica HOM05D005146 ORTHO05D006752 1.8e-34 150.6 92 75.0
BolC8t52160H Brassica oleracea HOM05D005146 ORTHO05D032927 4.3e-33 146.0 265 39.6
BcaC07g41610 Brassica carinata HOM05D005146 ORTHO05D032927 1.1e-31 141.4 269 37.9
BcaC04g20388 Brassica carinata HOM05D005146 ORTHO05D006752 2.6e-30 136.7 185 45.4
Oeu039054.1 Olea europaea HOM05D000784 ORTHO05D000116 1.9e-28 130.6 79 74.7
SEGI_30125 Sequoiadendron giganteum HOM05D005146 ORTHO05D006752 7.2e-28 128.6 92 67.4
C08p46100 Brassica napus HOM05D005146 ORTHO05D032927 1.6e-27 127.5 261 36.4
Lsat_1_v5_gn_2_8581 Lactuca sativa HOM05D000202 ORTHO05D000117 6.9e-23 112.1 135 43.7
Lsat_1_v5_gn_2_8661 Lactuca sativa HOM05D000202 ORTHO05D000117 5.9e-22 109.0 135 43.0
MELO3C032066.2 Cucumis melo HOM05D005146 ORTHO05D006752 9.4e-20 101.7 73 67.1
CAN.G1688.3 Capsicum annuum HOM05D005146 ORTHO05D011342 3.7e-16 89.7 56 73.2
BcaNung04119 Brassica carinata HOM05D001941 ORTHO05D002198 1.5e-12 77.8 45 82.2
Actinidia16979 Actinidia chinensis HOM05D005146 ORTHO05D006752 3.2e-12 76.6 90 46.7
MELO3C033356.2 Cucumis melo HOM05D005146 ORTHO05D166957 1.6e-11 74.3 49 73.5
Cfa017682 Carpinus fangiana HOM05D005146 ORTHO05D123472 4.1e-07 59.7 42 73.8


User provided reference genes

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