Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cpa.g.sc104.54 Carica papaya HOM05D002952 ORTHO05D003361 1.3e-70 269.6 137 100.0
COL.COLO4_29595 Corchorus olitorius HOM05D002952 ORTHO05D003361 2.7e-36 155.6 125 65.6
Atru.chr8.1386 Acer truncatum HOM05D002952 ORTHO05D003361 1.8e-35 152.9 119 64.7
Thecc.05G101800 Theobroma cacao HOM05D002952 ORTHO05D003361 3.9e-35 151.8 114 65.8
QL07p037253 Quercus lobata HOM05D002952 ORTHO05D003361 4.4e-34 148.3 128 60.9
Duzib093G0565 Durio zibethinus HOM05D002952 ORTHO05D003361 9.7e-34 147.1 125 61.6
Actinidia07937 Actinidia chinensis HOM05D002952 ORTHO05D003361 1.3e-33 146.7 136 58.1
Dinv12331 Davidia involucrata HOM05D002952 ORTHO05D003361 4.8e-33 144.8 114 63.2
Ciclev10011126m.g Citrus clementina HOM05D002952 ORTHO05D003361 8.2e-33 144.1 119 61.3
MD14G1036800 Malus domestica HOM05D002952 ORTHO05D003361 2.4e-32 142.5 129 55.0
Manes.08G032200 Manihot esculenta HOM05D002952 ORTHO05D003361 3.1e-32 142.1 114 62.3
Prupe.7G097500 Prunus persica HOM05D002952 ORTHO05D003361 3.1e-32 142.1 129 55.8
Gorai.006G150500 Gossypium raimondii HOM05D002952 ORTHO05D003361 4.1e-32 141.7 125 58.4
Gohir.D09G131900 Gossypium hirsutum HOM05D002952 ORTHO05D003361 7.0e-32 141.0 114 62.3
CSS0009413 Camellia sinensis var. sinensis HOM05D002952 ORTHO05D003361 9.1e-32 140.6 118 58.5
CiPaw.10G016000 Carya illinoinensis HOM05D002952 ORTHO05D003361 9.1e-32 140.6 126 55.6
MD12G1037800 Malus domestica HOM05D002952 ORTHO05D003361 9.1e-32 140.6 129 55.0
Gohir.A09G135300 Gossypium hirsutum HOM05D002952 ORTHO05D003361 1.5e-31 139.8 125 57.6
Cfa016675 Carpinus fangiana HOM05D002952 ORTHO05D003361 2.6e-31 139.0 114 62.3
Haze_19692 Corylus avellana HOM05D002952 ORTHO05D003361 3.5e-31 138.7 114 62.3
Nn6g34739 Nelumbo nucifera HOM05D002952 ORTHO05D003361 3.5e-31 138.7 131 53.4
RcHm_v2.0_Chr3g0475531 Rosa chinensis HOM05D002952 ORTHO05D003361 4.5e-31 138.3 122 58.2
Sabra06G0157600 Salix brachista HOM05D002952 ORTHO05D003361 7.7e-31 137.5 135 55.6
Potri.006G204600 Populus trichocarpa HOM05D002952 ORTHO05D003361 1.0e-30 137.1 122 55.7
FvH4_6g20080 Fragaria vesca HOM05D002952 ORTHO05D003361 1.7e-30 136.3 130 56.2
FAN05G1787 Fragaria x ananassa HOM05D002952 ORTHO05D003361 6.5e-30 134.4 130 55.4
GSVIVG01033943001 Vitis vinifera HOM05D002952 ORTHO05D003361 6.5e-30 134.4 116 60.3
vmacro08846 Vaccinium macrocarpon HOM05D002952 ORTHO05D003361 8.5e-30 134.0 113 60.2
Sc02g0000550 Simmondsia chinensis HOM05D002952 ORTHO05D003361 2.5e-29 132.5 135 50.4
CANSAT64G1472 Cannabis sativa HOM05D002952 ORTHO05D003361 3.2e-29 132.1 122 57.4
Lj1C1049T5 Lonicera japonica HOM05D002952 ORTHO05D003361 7.2e-29 131.0 119 58.8
Rhsim04G0130200 Rhododendron simsii HOM05D002952 ORTHO05D003361 9.4e-29 130.6 118 55.9
FAN09G1177 Fragaria x ananassa HOM05D002952 ORTHO05D003361 1.2e-28 130.2 120 58.3
FAN14G0567 Fragaria x ananassa HOM05D002952 ORTHO05D003361 1.6e-28 129.8 136 53.7
Medtr1g057130 Medicago truncatula HOM05D002952 ORTHO05D003361 2.7e-28 129.0 125 56.8
TAR633G2330 Trochodendron aralioides HOM05D002952 ORTHO05D003361 2.7e-28 129.0 116 56.9
FAN02G4506 Fragaria x ananassa HOM05D002952 ORTHO05D003361 3.6e-28 128.6 136 53.7
Ca_11716_v3 Cicer arietinum L. HOM05D002952 ORTHO05D003361 4.7e-28 128.3 128 53.9
Psat6g084840 Pisum sativum HOM05D002952 ORTHO05D003361 6.1e-28 127.9 125 57.6
Cc06_g06410 Coffea canephora HOM05D002952 ORTHO05D003361 1.4e-27 126.7 118 48.3
VMungo0720G2383 Vigna mungo HOM05D002952 ORTHO05D003361 1.4e-27 126.7 122 56.6
MBI01_g04531_MAGBIO Magnolia biondii HOM05D002952 ORTHO05D003361 5.2e-27 124.8 115 53.0
Eucgr.A02600 Eucalyptus grandis HOM05D002952 ORTHO05D003361 6.7e-27 124.4 114 56.1
PGR004G2265 Punica granatum HOM05D002952 ORTHO05D003361 1.5e-26 123.2 122 49.2
TPR.G31863 Trifolium pratense HOM05D002952 ORTHO05D003361 1.5e-26 123.2 125 56.0
Glyma.02G198100 Glycine max HOM05D002952 ORTHO05D003361 3.3e-26 122.1 121 54.5
Phvul.007G269200 Phaseolus vulgaris HOM05D002952 ORTHO05D003361 6.3e-25 117.9 108 54.6
arahy.Tifrunner.gnm1.ann1.0X8X9Q Arachis hypogaea HOM05D002952 ORTHO05D003361 2.4e-24 115.9 125 50.4
arahy.Tifrunner.gnm1.ann1.4V0AV8 Arachis hypogaea HOM05D002952 ORTHO05D003361 2.4e-24 115.9 125 50.4
Hund03839 Selenicereus undatus HOM05D002952 ORTHO05D003361 3.1e-24 115.5 114 49.1
Lj5g0011168 Lotus japonicus HOM05D002952 ORTHO05D003361 5.3e-24 114.8 125 52.8
CDE02G4171 Ceratophyllum demersum HOM05D002952 ORTHO05D003361 2.6e-23 112.5 125 48.8
PSO384G1939 Papaver somniferum HOM05D002952 ORTHO05D003361 2.6e-23 112.5 112 48.2
EL10Ac7g16807 Beta vulgaris HOM05D002952 ORTHO05D003361 1.3e-22 110.2 112 50.9
unitig_26.g9160 Utricularia gibba HOM05D002952 ORTHO05D003361 7.2e-21 104.4 122 41.8
ATR0772G085 Amborella trichopoda HOM05D002952 ORTHO05D003361 9.4e-21 104.0 112 46.4
CDE05G2761 Ceratophyllum demersum HOM05D002952 ORTHO05D003361 8.0e-20 100.9 113 43.4
Dinv41190 Davidia involucrata HOM05D002952 ORTHO05D003361 8.8e-19 97.4 113 42.5
CsaV3_2G008810 Cucumis sativus L. HOM05D002952 ORTHO05D003361 1.2e-18 97.1 124 38.7
MELO3C003959.2 Cucumis melo HOM05D002952 ORTHO05D003361 2.0e-18 96.3 113 41.6
MSTRG.5937 Avicennia marina HOM05D002952 ORTHO05D003361 2.6e-18 95.9 114 42.1
ClCG11G011660 Citrullus lanatus HOM05D002952 ORTHO05D003361 2.6e-18 95.9 113 40.7
MD13G1240300 Malus domestica HOM05D002952 ORTHO05D003361 2.6e-18 95.9 116 44.0
ATR0580G026 Amborella trichopoda HOM05D002952 ORTHO05D003361 3.4e-18 95.5 112 43.8
GSVIVG01029303001 Vitis vinifera HOM05D002952 ORTHO05D003361 3.4e-18 95.5 114 42.1
Sed0020294 Sechium edule HOM05D002952 ORTHO05D003361 7.5e-18 94.4 113 39.8
Thecc.09G188100 Theobroma cacao HOM05D002952 ORTHO05D003361 7.5e-18 94.4 114 41.2
Lj6g0025977 Lotus japonicus HOM05D002952 ORTHO05D003361 9.7e-18 94.0 114 40.4
Prupe.1G073600 Prunus persica HOM05D002952 ORTHO05D003361 9.7e-18 94.0 116 42.2
Migut.J00788 Erythranthe guttata HOM05D002952 ORTHO05D003361 1.3e-17 93.6 114 42.1
FvH4_4g07030 Fragaria vesca HOM05D002952 ORTHO05D003361 1.3e-17 93.6 113 43.4
FAN07G2391 Fragaria x ananassa HOM05D002952 ORTHO05D003361 1.3e-17 93.6 113 43.4
FAN17G1204 Fragaria x ananassa HOM05D002952 ORTHO05D003361 1.3e-17 93.6 113 44.2
Sabra06G0054900 Salix brachista HOM05D002952 ORTHO05D003361 1.3e-17 93.6 114 41.2
Solyc07g018100.2 Solanum lycopersicum HOM05D002952 ORTHO05D003361 1.3e-17 93.6 113 41.6
Sopen07g007020 Solanum pennellii HOM05D002952 ORTHO05D003361 1.3e-17 93.6 113 41.6
COL.COLO4_23445 Corchorus olitorius HOM05D002952 ORTHO05D003361 1.7e-17 93.2 114 40.4
Gohir.A13G207800 Gossypium hirsutum HOM05D002952 ORTHO05D003361 2.2e-17 92.8 114 39.5
VMungo1309G2675 Vigna mungo HOM05D002952 ORTHO05D003361 2.2e-17 92.8 119 37.8
Sabra18G0115000 Salix brachista HOM05D002952 ORTHO05D003361 2.8e-17 92.4 119 40.3
FAN12G2043 Fragaria x ananassa HOM05D002952 ORTHO05D003361 3.7e-17 92.0 113 42.5
FAN22G0487 Fragaria x ananassa HOM05D002952 ORTHO05D003361 3.7e-17 92.0 113 42.5
Haze_22041 Corylus avellana HOM05D002952 ORTHO05D003361 4.8e-17 91.7 114 41.2
RcHm_v2.0_Chr4g0399151 Rosa chinensis HOM05D002952 ORTHO05D003361 4.8e-17 91.7 113 44.2
Cc06_g17430 Coffea canephora HOM05D002952 ORTHO05D003361 6.3e-17 91.3 114 40.4
Gohir.D13G212300 Gossypium hirsutum HOM05D002952 ORTHO05D003361 6.3e-17 91.3 114 38.6
Gorai.013G242600 Gossypium raimondii HOM05D002952 ORTHO05D003361 6.3e-17 91.3 114 38.6
CAN.G32.3 Capsicum annuum HOM05D002952 ORTHO05D003361 8.3e-17 90.9 113 39.8
DCAR_014676 Daucus carota HOM05D002952 ORTHO05D003361 8.3e-17 90.9 114 40.4
Dinv25450 Davidia involucrata HOM05D002952 ORTHO05D003361 8.3e-17 90.9 114 39.5
MD16G1247000 Malus domestica HOM05D000002 ORTHO05D003361 1.1e-16 90.5 116 41.4
Cpa.g.sc115.66 Carica papaya HOM05D002952 ORTHO05D003361 1.4e-16 90.1 113 41.6
HanXRQChr03g0065421 Helianthus annuus HOM05D002952 ORTHO05D003361 1.4e-16 90.1 113 40.7
Atru.chr7.937 Acer truncatum HOM05D002952 ORTHO05D003361 1.8e-16 89.7 114 40.4
Cfa013462 Carpinus fangiana HOM05D002952 ORTHO05D003361 1.8e-16 89.7 114 40.4
CiPaw.07G198300 Carya illinoinensis HOM05D002952 ORTHO05D003361 1.8e-16 89.7 114 39.5
Glyma.15G167100 Glycine max HOM05D002952 ORTHO05D003361 1.8e-16 89.7 114 38.6
Potri.018G140800 Populus trichocarpa HOM05D002952 ORTHO05D003361 1.8e-16 89.7 119 39.5
Lju170C21T3 Lonicera japonica HOM05D002952 ORTHO05D003361 2.4e-16 89.4 113 39.8
Medtr2g038210 Medicago truncatula HOM05D002952 ORTHO05D003361 3.1e-16 89.0 114 37.7
SEGI_27054 Sequoiadendron giganteum HOM05D002952 ORTHO05D003361 3.1e-16 89.0 120 46.7
HPP92_015379 Vanilla planifolia HOM05D002952 ORTHO05D003361 3.1e-16 89.0 115 42.6
Ciclev10007425m.g Citrus clementina HOM05D002952 ORTHO05D003361 4.1e-16 88.6 114 39.5
Glyma.09G060600 Glycine max HOM05D002952 ORTHO05D003361 4.1e-16 88.6 114 37.7
CSS0013758 Camellia sinensis var. sinensis HOM05D002952 ORTHO05D003361 5.3e-16 88.2 114 39.5
PSO170G2574 Papaver somniferum HOM05D002952 ORTHO05D003361 5.3e-16 88.2 132 34.1
Rhsim03G0267600 Rhododendron simsii HOM05D002952 ORTHO05D003361 5.3e-16 88.2 114 40.4
Ca_02121_v3 Cicer arietinum L. HOM05D002952 ORTHO05D003361 7.0e-16 87.8 114 36.0
PSO063G0242 Papaver somniferum HOM05D002952 ORTHO05D003361 7.0e-16 87.8 132 34.1
TPR.G31045 Trifolium pratense HOM05D002952 ORTHO05D003361 7.0e-16 87.8 114 36.8
Ah.09g229420 Amaranthus hybridus HOM05D002952 ORTHO05D003361 9.1e-16 87.4 125 36.0
Aqoxy7G02883 Aquilegia oxysepala HOM05D002952 ORTHO05D003361 9.1e-16 87.4 113 41.6
Eucgr.C00100 Eucalyptus grandis HOM05D002952 ORTHO05D003361 9.1e-16 87.4 113 42.5
Nitab4.5_0001245g0040 Nicotiana tabacum HOM05D002952 ORTHO05D003361 9.1e-16 87.4 114 39.5
Nitab4.5_0006774g0010 Nicotiana tabacum HOM05D002952 ORTHO05D003361 9.1e-16 87.4 114 39.5
Potri.006G073600 Populus trichocarpa HOM05D002952 ORTHO05D003361 1.2e-15 87.0 114 38.6
Zm00001eb420400 Zea mays HOM05D002952 ORTHO05D003361 1.2e-15 87.0 135 36.3
Peaxi162Scf00231g00917 Petunia axillaris HOM05D002952 ORTHO05D003361 1.6e-15 86.7 114 39.5
Os04g0298600 Oryza sativa ssp. japonica HOM05D002952 ORTHO05D003361 2.0e-15 86.3 135 37.0
MBI14_g10721_MAGBIO Magnolia biondii HOM05D002952 ORTHO05D003361 2.7e-15 85.9 115 39.1
Nn8g40677 Nelumbo nucifera HOM05D002952 ORTHO05D003361 2.7e-15 85.9 113 37.2
AUR62031276 Chenopodium quinoa HOM05D002952 ORTHO05D003361 3.5e-15 85.5 113 38.1
Oeu064560.1 Olea europaea HOM05D002952 ORTHO05D003361 3.5e-15 85.5 119 37.8
vmacro05990 Vaccinium macrocarpon HOM05D002952 ORTHO05D003361 3.5e-15 85.5 114 36.0
HanXRQChr03g0065441 Helianthus annuus HOM05D002952 ORTHO05D003361 4.5e-15 85.1 115 39.1
PGR142G2741 Punica granatum HOM05D002952 ORTHO05D003361 4.5e-15 85.1 114 43.0
AUR62027417 Chenopodium quinoa HOM05D002952 ORTHO05D003361 5.9e-15 84.7 113 38.1
Phvul.009G235200 Phaseolus vulgaris HOM05D002952 ORTHO05D003361 5.9e-15 84.7 114 36.0
Hund12691 Selenicereus undatus HOM05D002952 ORTHO05D003361 5.9e-15 84.7 113 38.9
THA.LOC104803958 Tarenaya hassleriana HOM05D002952 ORTHO05D003361 7.7e-15 84.3 113 37.2
ECA240G1792 Erigeron canadensis HOM05D002952 ORTHO05D003361 1.0e-14 84.0 114 39.5
HanXRQChr09g0245381 Helianthus annuus HOM05D002952 ORTHO05D003361 1.0e-14 84.0 114 38.6
Lalb_Chr13g0299871 Lupinus albus HOM05D002952 ORTHO05D003361 1.0e-14 84.0 119 37.0
CANSAT01G1287 Cannabis sativa HOM05D002952 ORTHO05D003361 1.3e-14 83.6 113 41.6
Psat1g143480 Pisum sativum HOM05D002952 ORTHO05D003361 1.3e-14 83.6 114 35.1
Psat4g013440 Pisum sativum HOM05D002952 ORTHO05D003361 1.3e-14 83.6 119 35.3
Sc14g0003040 Simmondsia chinensis HOM05D002952 ORTHO05D003361 1.3e-14 83.6 113 40.7
Aa31LG8G16340 Aethionema arabicum HOM05D002952 ORTHO05D003361 1.7e-14 83.2 113 38.1
VMungo1215G0843 Vigna mungo HOM05D002952 ORTHO05D003361 1.7e-14 83.2 113 36.3
BraA07t27939Z Brassica rapa HOM05D002952 ORTHO05D003361 2.2e-14 82.8 120 37.5
Sp3g32670 Schrenkiella parvula HOM05D002952 ORTHO05D003361 2.2e-14 82.8 113 38.1
Thhalv10022546m.g Eutrema salsugineum HOM05D002952 ORTHO05D003361 2.9e-14 82.4 113 37.2
Lalb_Chr07g0180711 Lupinus albus HOM05D002952 ORTHO05D003361 3.8e-14 82.0 115 36.5
Pp3c5_16960 Physcomitrium patens HOM05D002952 ORTHO05D003361 3.8e-14 82.0 116 37.9
AL5G18050 Arabidopsis lyrata HOM05D002952 ORTHO05D003361 5.0e-14 81.6 113 36.3
AT3G28430 Arabidopsis thaliana HOM05D002952 ORTHO05D003361 5.0e-14 81.6 113 36.3
Lsat_1_v5_gn_7_55800 Lactuca sativa HOM05D002952 ORTHO05D003361 5.0e-14 81.6 114 36.8
BcaC06g36561 Brassica carinata HOM05D002952 ORTHO05D003361 6.5e-14 81.3 113 38.1
A07p01440 Brassica napus HOM05D002952 ORTHO05D003361 6.5e-14 81.3 113 38.1
C07p02900 Brassica napus HOM05D002952 ORTHO05D003361 6.5e-14 81.3 113 38.1
BolC7t40687H Brassica oleracea HOM05D002952 ORTHO05D003361 6.5e-14 81.3 113 38.1
BraA07t27938Z Brassica rapa HOM05D002952 ORTHO05D003361 6.5e-14 81.3 113 38.1
Manes.06G018200 Manihot esculenta HOM05D002952 ORTHO05D003361 6.5e-14 81.3 114 39.5
BcaB03g16719 Brassica carinata HOM05D002952 ORTHO05D003361 8.5e-14 80.9 113 36.3
Ca_21260_v3 Cicer arietinum L. HOM05D002952 ORTHO05D003361 8.5e-14 80.9 119 34.5
THA.LOC104814647 Tarenaya hassleriana HOM05D002952 ORTHO05D003361 1.1e-13 80.5 113 38.1
EL10Ac8g19298 Beta vulgaris HOM05D002952 ORTHO05D003361 1.5e-13 80.1 113 36.3
CARHR292530 Cardamine hirsuta HOM05D002952 ORTHO05D003361 1.5e-13 80.1 113 36.3
BraA07t29362Z Brassica rapa HOM05D002952 ORTHO05D003361 1.9e-13 79.7 113 37.2
Phvul.003G140400 Phaseolus vulgaris HOM05D002952 ORTHO05D003361 1.9e-13 79.7 114 35.1
BcaB03g14394 Brassica carinata HOM05D002952 ORTHO05D003361 2.5e-13 79.3 113 37.2
C07p24030 Brassica napus HOM05D002952 ORTHO05D003361 2.5e-13 79.3 113 37.2
BolC7t42928H Brassica oleracea HOM05D002952 ORTHO05D003361 2.5e-13 79.3 113 37.2
Mapoly0006s0005 Marchantia polymorpha HOM05D002952 ORTHO05D003361 3.2e-13 79.0 116 38.8
A07p16350 Brassica napus HOM05D002952 ORTHO05D003361 4.2e-13 78.6 113 36.3
Medtr4g127210 Medicago truncatula HOM05D002952 ORTHO05D003361 4.2e-13 78.6 119 33.6
Carub.0005s0695 Capsella rubella HOM05D002952 ORTHO05D003361 5.5e-13 78.2 134 33.6
BcaB08g34852 Brassica carinata HOM05D002952 ORTHO05D003361 9.4e-13 77.4 113 35.4
SEGI_03548 Sequoiadendron giganteum HOM05D002952 ORTHO05D003361 9.4e-13 77.4 139 36.7
arahy.Tifrunner.gnm1.ann1.32QIWM Arachis hypogaea HOM05D002952 ORTHO05D003361 2.1e-12 76.3 114 33.3
arahy.Tifrunner.gnm1.ann1.MZE1GT Arachis hypogaea HOM05D002952 ORTHO05D003361 2.1e-12 76.3 114 33.3
arahy.Tifrunner.gnm1.ann1.2Y2T3J Arachis hypogaea HOM05D002952 ORTHO05D003361 8.0e-12 74.3 66 56.1
Pp3c16_8730 Physcomitrium patens HOM05D002952 ORTHO05D003361 8.0e-12 74.3 117 35.9
Lj4g0023754 Lotus japonicus HOM05D002952 ORTHO05D003361 2.3e-11 72.8 114 31.6
arahy.Tifrunner.gnm1.ann1.0Q74GS Arachis hypogaea HOM05D002952 ORTHO05D003361 3.4e-10 68.9 52 61.5
arahy.Tifrunner.gnm1.ann1.HKST4K Arachis hypogaea HOM05D002952 ORTHO05D003361 3.4e-10 68.9 52 61.5
AagrBONN_evm.TU.Sc2ySwM_362.2680 Anthoceros agrestis HOM05D002952 ORTHO05D003361 5.7e-10 68.2 127 32.3
arahy.Tifrunner.gnm1.ann1.AN3HGT Arachis hypogaea HOM05D002952 ORTHO05D003361 9.8e-10 67.4 52 59.6
Actinidia25393 Actinidia chinensis HOM05D002952 ORTHO05D003361 6.3e-09 64.7 147 27.2
Actinidia29954 Actinidia chinensis HOM05D002952 ORTHO05D003361 6.3e-09 64.7 147 27.2
CBR_g9125 Chara braunii HOM05D002952 ORTHO05D003361 1.4e-08 63.5 124 33.9
Actinidia38497 Actinidia chinensis HOM05D002952 ORTHO05D003361 1.8e-08 63.2 97 32.0
Duzib150G0495 Durio zibethinus HOM05D002952 ORTHO05D003361 2.7e-07 59.3 52 55.8
SMO356G0480 Selaginella moellendorffii HOM05D002952 ORTHO05D003361 5.9e-07 58.2 116 31.0


User provided reference genes

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