Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cpa.g.sc104.41 Carica papaya HOM05D015120 ORTHO05D010825 4.0e-125 451.4 229 100.0
Thecc.01G085100 Theobroma cacao HOM05D015120 ORTHO05D010666 1.9e-37 160.2 218 41.7
Atru.chr8.1376 Acer truncatum HOM05D015120 ORTHO05D010666 2.7e-36 156.4 236 42.4
Ciclev10013330m.g Citrus clementina HOM05D015120 ORTHO05D010666 3.5e-36 156.0 200 41.0
Gohir.D10G099500 Gossypium hirsutum HOM05D015120 ORTHO05D010666 2.1e-28 130.2 212 34.4
Gorai.011G109200 Gossypium raimondii HOM05D015120 ORTHO05D010666 3.5e-28 129.4 212 34.4
Gohir.A10G088400 Gossypium hirsutum HOM05D015120 ORTHO05D010666 7.8e-28 128.3 190 36.3
Cpa.g.sc129.12 Carica papaya HOM05D015120 ORTHO05D010666 2.3e-27 126.7 216 34.7
MD12G1087900 Malus domestica HOM05D010052 ORTHO05D010666 1.5e-23 114.0 231 32.0
FAN09G4754 Fragaria x ananassa HOM05D010052 ORTHO05D010666 4.4e-23 112.5 247 30.8
Prupe.7G096700 Prunus persica HOM05D010052 ORTHO05D010666 7.6e-23 111.7 176 38.6
Prupe.7G048100 Prunus persica HOM05D010052 ORTHO05D010666 2.9e-22 109.8 255 31.4
MD14G1037900 Malus domestica HOM05D010052 ORTHO05D010666 4.9e-22 109.0 237 34.6
MD12G1039100 Malus domestica HOM05D010052 ORTHO05D010666 8.3e-22 108.2 239 35.6
MD07G1151300 Malus domestica HOM05D010052 ORTHO05D010666 2.1e-20 103.6 238 30.3
MD14G1037800 Malus domestica HOM05D010052 ORTHO05D010666 2.1e-20 103.6 251 33.1
Prupe.7G096300 Prunus persica HOM05D010052 ORTHO05D010666 4.6e-20 102.4 212 34.0
TWI53G0569 Tripterygium wilfordii HOM05D008136 ORTHO05D002052 1.5e-18 97.4 203 31.5
Sabra06G0157200 Salix brachista HOM05D008136 ORTHO05D002052 1.9e-18 97.1 171 31.6
Potri.006G204000 Populus trichocarpa HOM05D008136 ORTHO05D002052 2.5e-18 96.7 189 28.0
ClCG10G018400 Citrullus lanatus HOM05D008136 ORTHO05D002052 4.7e-17 92.4 182 31.3
RcHm_v2.0_Chr3g0475771 Rosa chinensis HOM05D010052 ORTHO05D010666 4.7e-17 92.4 199 33.2
TAR369G0448 Trochodendron aralioides HOM05D002687 ORTHO05D002052 1.4e-16 90.9 200 28.0
COL.COLO4_11689 Corchorus olitorius HOM05D015120 ORTHO05D010666 1.8e-16 90.5 118 37.3
TWI74G0144 Tripterygium wilfordii HOM05D008136 ORTHO05D002052 1.8e-16 90.5 192 33.3
TAR623G0011 Trochodendron aralioides HOM05D002687 ORTHO05D002052 5.2e-16 89.0 173 32.4
Prupe.7G096800 Prunus persica HOM05D009874 ORTHO05D010825 6.8e-16 88.6 161 34.2
FAN11G3829 Fragaria x ananassa HOM05D010052 ORTHO05D010666 8.9e-16 88.2 224 33.0
COL.COLO4_32398 Corchorus olitorius HOM05D010991 ORTHO05D010825 1.5e-15 87.4 224 31.2
FvH4_3g40821 Fragaria vesca HOM05D010052 ORTHO05D010666 2.0e-15 87.0 217 33.2
Duzib106G1810 Durio zibethinus HOM05D008136 ORTHO05D002052 3.4e-15 86.3 165 29.7
TAR623G1724 Trochodendron aralioides HOM05D002687 ORTHO05D002052 3.4e-15 86.3 168 32.7
Duzib093G0447 Durio zibethinus HOM05D008136 ORTHO05D002052 1.3e-14 84.3 165 29.7
RcHm_v2.0_Chr7g0211331 Rosa chinensis HOM05D010052 ORTHO05D010666 1.7e-14 84.0 226 30.5
MELO3C009533.2 Cucumis melo HOM05D008136 ORTHO05D002052 2.2e-14 83.6 182 29.7
COL.COLO4_29585 Corchorus olitorius HOM05D009874 ORTHO05D010825 3.8e-14 82.8 196 29.1
CsaV3_3G037890 Cucumis sativus L. HOM05D008136 ORTHO05D002052 3.8e-14 82.8 172 29.1
FvH4_6g20210 Fragaria vesca HOM05D009874 ORTHO05D010825 1.4e-13 80.9 142 34.5
Rhsim01G0201900 Rhododendron simsii HOM05D002687 ORTHO05D002052 1.9e-13 80.5 193 33.7
RcHm_v2.0_Chr3g0475751 Rosa chinensis HOM05D009874 ORTHO05D010825 1.9e-13 80.5 185 31.9
Haze_19713 Corylus avellana HOM05D008136 ORTHO05D002052 2.4e-13 80.1 177 32.2
Thecc.02G128900 Theobroma cacao HOM05D010991 ORTHO05D010825 3.2e-13 79.7 219 32.4
Cfa016687 Carpinus fangiana HOM05D008136 ORTHO05D002052 5.4e-13 79.0 184 32.6
TAR633G1301 Trochodendron aralioides HOM05D002687 ORTHO05D002052 5.4e-13 79.0 192 28.6
CiPaw.13G131000 Carya illinoinensis HOM05D002687 ORTHO05D002052 7.1e-13 78.6 197 29.9
COL.COLO4_29586 Corchorus olitorius HOM05D008136 ORTHO05D002052 7.1e-13 78.6 185 31.4
RcHm_v2.0_Chr5g0073621 Rosa chinensis HOM05D010052 ORTHO05D010666 7.1e-13 78.6 226 30.1
Thecc.02G129000 Theobroma cacao HOM05D010991 ORTHO05D010825 7.1e-13 78.6 224 29.0
MD03G1153500 Malus domestica HOM05D002687 ORTHO05D002052 9.3e-13 78.2 204 30.4
Thecc.05G103000 Theobroma cacao HOM05D008136 ORTHO05D002052 9.3e-13 78.2 148 28.4
TAR633G0472 Trochodendron aralioides HOM05D002687 ORTHO05D002052 1.2e-12 77.8 202 26.7
CiPaw.10G094600 Carya illinoinensis HOM05D002687 ORTHO05D002052 1.6e-12 77.4 215 26.5
DCAR_010643 Daucus carota HOM05D002687 ORTHO05D002052 1.6e-12 77.4 203 27.6
Gohir.D01G191800 Gossypium hirsutum HOM05D009874 ORTHO05D010825 1.6e-12 77.4 198 30.8
Gorai.002G235700 Gossypium raimondii HOM05D009874 ORTHO05D010825 1.6e-12 77.4 198 30.3
HanXRQChr13g0420231 Helianthus annuus HOM05D002687 ORTHO05D002052 1.6e-12 77.4 217 31.3
Thecc.05G103100 Theobroma cacao HOM05D009874 ORTHO05D010825 1.6e-12 77.4 192 29.7
MD12G1039000 Malus domestica HOM05D009874 ORTHO05D010825 2.1e-12 77.0 144 34.0
Ciclev10013405m.g Citrus clementina HOM05D008136 ORTHO05D002052 3.5e-12 76.3 170 31.8
Gohir.D09G131400 Gossypium hirsutum HOM05D008136 ORTHO05D002052 3.5e-12 76.3 177 24.9
Gorai.006G150000 Gossypium raimondii HOM05D008136 ORTHO05D002052 3.5e-12 76.3 177 24.9
Potri.016G071200 Populus trichocarpa HOM05D038355 ORTHO05D002052 3.5e-12 76.3 196 23.5
BcaB01g00366 Brassica carinata HOM05D008136 ORTHO05D002052 6.0e-12 75.5 170 32.4
FvH4_5g22901 Fragaria vesca HOM05D010052 ORTHO05D010666 6.0e-12 75.5 238 29.4
CiPaw.14G096100 Carya illinoinensis HOM05D002687 ORTHO05D002052 7.8e-12 75.1 195 29.2
Medtr2g087080 Medicago truncatula HOM05D002687 ORTHO05D002052 7.8e-12 75.1 161 28.0
TAR636G0437 Trochodendron aralioides HOM05D002687 ORTHO05D002052 7.8e-12 75.1 200 27.5
TAR636G3204 Trochodendron aralioides HOM05D002687 ORTHO05D002052 7.8e-12 75.1 200 27.5
CiPaw.09G020400 Carya illinoinensis HOM05D008136 ORTHO05D002052 1.0e-11 74.7 163 31.3
Duzib170G0577 Durio zibethinus HOM05D002687 ORTHO05D002052 1.0e-11 74.7 203 28.1
FAN18G3409 Fragaria x ananassa HOM05D010052 ORTHO05D010666 1.0e-11 74.7 241 29.0
Psat3g029040 Pisum sativum HOM05D017388 ORTHO05D010666 1.0e-11 74.7 167 33.5
Sed0011968 Sechium edule HOM05D008136 ORTHO05D002052 1.0e-11 74.7 195 27.2
Thecc.02G128800 Theobroma cacao HOM05D015680 ORTHO05D010825 1.0e-11 74.7 195 30.3
A09p45540 Brassica napus HOM05D008136 ORTHO05D002052 1.7e-11 73.9 170 31.8
BraA09t40016Z Brassica rapa HOM05D008136 ORTHO05D002052 1.7e-11 73.9 170 31.8
Haze_23313 Corylus avellana HOM05D002687 ORTHO05D002052 1.7e-11 73.9 193 28.0
Medtr4g051652 Medicago truncatula HOM05D002687 ORTHO05D002052 2.3e-11 73.6 206 28.2
THA.LOC104823630 Tarenaya hassleriana HOM05D008136 ORTHO05D002052 2.3e-11 73.6 220 28.2
BcaC07g39611 Brassica carinata HOM05D008136 ORTHO05D002052 3.9e-11 72.8 170 31.8
C08p27700 Brassica napus HOM05D008136 ORTHO05D002052 3.9e-11 72.8 170 31.8
BolC8t50390H Brassica oleracea HOM05D008136 ORTHO05D002052 3.9e-11 72.8 170 31.8
Manes.11G165500 Manihot esculenta HOM05D002687 ORTHO05D002052 3.9e-11 72.8 187 29.4
Cfa009948 Carpinus fangiana HOM05D002687 ORTHO05D002052 5.1e-11 72.4 193 28.0
FAN13G1417 Fragaria x ananassa HOM05D010052 ORTHO05D010666 5.1e-11 72.4 207 30.0
MD00G1129000 Malus domestica HOM05D002687 ORTHO05D002052 5.1e-11 72.4 204 29.9
Atru.chr3.3136 Acer truncatum HOM05D002687 ORTHO05D002052 8.7e-11 71.6 209 28.7
PSO339G2661 Papaver somniferum HOM05D002687 ORTHO05D002052 8.7e-11 71.6 191 28.8
PSO384G1068 Papaver somniferum HOM05D002687 ORTHO05D002052 8.7e-11 71.6 191 28.8
TPR.G4667 Trifolium pratense HOM05D002687 ORTHO05D002052 8.7e-11 71.6 192 29.2
A07p18100 Brassica napus HOM05D002687 ORTHO05D002052 1.1e-10 71.2 178 30.3
BraA07t29528Z Brassica rapa HOM05D002687 ORTHO05D002052 1.1e-10 71.2 178 30.3
Thhalv10010982m.g Eutrema salsugineum HOM05D008136 ORTHO05D002052 1.1e-10 71.2 170 31.8
TAR633G0261 Trochodendron aralioides HOM05D002687 ORTHO05D002052 1.1e-10 71.2 206 27.2
CSS0030865 Camellia sinensis var. sinensis HOM05D002687 ORTHO05D002052 1.5e-10 70.9 185 30.3
CSS0032031 Camellia sinensis var. sinensis HOM05D002687 ORTHO05D002052 1.5e-10 70.9 185 30.3
Lsat_1_v5_gn_3_114060 Lactuca sativa HOM05D002687 ORTHO05D002052 1.5e-10 70.9 193 29.5
FAN04G3011 Fragaria x ananassa HOM05D010052 ORTHO05D010666 3.3e-10 69.7 236 27.5
Prupe.6G142400 Prunus persica HOM05D002687 ORTHO05D002052 3.3e-10 69.7 204 28.9
Actinidia07275 Actinidia chinensis HOM05D002687 ORTHO05D002052 4.3e-10 69.3 172 31.4
QL01p011302 Quercus lobata HOM05D002687 ORTHO05D002052 5.6e-10 68.9 190 26.3
Gorai.007G048400 Gossypium raimondii HOM05D009874 ORTHO05D010825 7.3e-10 68.6 167 29.9
Hma1.2p1_0097F.1_g048090 Hydrangea macrophylla HOM05D002687 ORTHO05D002052 7.3e-10 68.6 171 31.0
Oeu055534.1 Olea europaea HOM05D012176 ORTHO05D014468 9.6e-10 68.2 162 29.6
Atru.chr8.1380 Acer truncatum HOM05D008136 ORTHO05D002052 1.3e-09 67.8 170 28.8
ATR0772G197 Amborella trichopoda HOM05D002687 ORTHO05D002052 1.3e-09 67.8 178 29.2
Ciclev10029176m.g Citrus clementina HOM05D002687 ORTHO05D002052 1.3e-09 67.8 162 29.6
MBI01_g04539_MAGBIO Magnolia biondii HOM05D002687 ORTHO05D002052 1.3e-09 67.8 216 25.0
AT3G52460 Arabidopsis thaliana HOM05D008136 ORTHO05D002052 1.6e-09 67.4 170 28.8
BcaC02g10865 Brassica carinata HOM05D002687 ORTHO05D002052 1.6e-09 67.4 175 30.3
C04p24310 Brassica napus HOM05D002687 ORTHO05D002052 1.6e-09 67.4 175 30.3
BolC4t23929H Brassica oleracea HOM05D002687 ORTHO05D002052 1.6e-09 67.4 175 30.3
MD12G1038800 Malus domestica HOM05D002687 ORTHO05D002052 1.6e-09 67.4 196 27.0
TPR.G35568 Trifolium pratense HOM05D017388 ORTHO05D010666 1.6e-09 67.4 168 32.1
Duzib150G0865 Durio zibethinus HOM05D002687 ORTHO05D002052 2.1e-09 67.0 213 25.8
Sabra16G0125800 Salix brachista HOM05D002687 ORTHO05D002052 2.1e-09 67.0 218 28.9
BcaC02g08259 Brassica carinata HOM05D002687 ORTHO05D002052 2.8e-09 66.6 200 28.0
C04p56620 Brassica napus HOM05D002687 ORTHO05D002052 2.8e-09 66.6 200 28.0
BolC4t27189H Brassica oleracea HOM05D002687 ORTHO05D002052 2.8e-09 66.6 200 28.0
BcaC01g04930 Brassica carinata HOM05D002687 ORTHO05D002052 3.6e-09 66.2 199 27.6
C03p31980 Brassica napus HOM05D002687 ORTHO05D002052 3.6e-09 66.2 199 27.6
BolC3t15541H Brassica oleracea HOM05D002687 ORTHO05D002052 3.6e-09 66.2 199 27.6
BraA03t11881Z Brassica rapa HOM05D002687 ORTHO05D002052 3.6e-09 66.2 199 26.6
Lsat_1_v5_gn_2_38441 Lactuca sativa HOM05D002687 ORTHO05D002052 3.6e-09 66.2 197 27.4
VMungo0720G1813 Vigna mungo HOM05D013176 ORTHO05D010666 3.6e-09 66.2 153 28.8
AL5G33110 Arabidopsis lyrata HOM05D008136 ORTHO05D002052 4.8e-09 65.9 170 29.4
VMungo1383G0805 Vigna mungo HOM05D017388 ORTHO05D010666 4.8e-09 65.9 162 31.5
CARHR162230 Cardamine hirsuta HOM05D008136 ORTHO05D002052 6.2e-09 65.5 171 29.8
Medtr7g106140 Medicago truncatula HOM05D017388 ORTHO05D010666 6.2e-09 65.5 157 33.1
Carub.0001s0701 Capsella rubella HOM05D002687 ORTHO05D002052 8.1e-09 65.1 196 26.0
SalBow3G2018 Salvia bowleyana HOM05D002687 ORTHO05D002052 8.1e-09 65.1 194 30.9
BraA04t17653Z Brassica rapa HOM05D002687 ORTHO05D002052 1.1e-08 64.7 197 27.9
A03p26690 Brassica napus HOM05D002687 ORTHO05D002052 1.4e-08 64.3 196 27.0
Oeu050407.1 Olea europaea HOM05D012176 ORTHO05D014468 1.4e-08 64.3 162 29.0
Prupe.7G096500 Prunus persica HOM05D010052 ORTHO05D010666 1.4e-08 64.3 99 36.4
Eucgr.J00544 Eucalyptus grandis HOM05D002687 ORTHO05D002052 1.8e-08 63.9 199 26.1
Carub.0005s1885 Capsella rubella HOM05D008136 ORTHO05D002052 2.4e-08 63.5 170 28.2
BcaB06g28135 Brassica carinata HOM05D002687 ORTHO05D002052 3.1e-08 63.2 203 26.1
Potri.001G218300 Populus trichocarpa HOM05D002687 ORTHO05D002052 3.1e-08 63.2 194 25.8
AL4G21170 Arabidopsis lyrata HOM05D002687 ORTHO05D002052 5.3e-08 62.4 197 29.4
CANSAT54G2775 Cannabis sativa HOM05D002687 ORTHO05D002052 5.3e-08 62.4 193 27.5
A04p20800 Brassica napus HOM05D002687 ORTHO05D002052 6.9e-08 62.0 184 28.3
Lj1g0008918 Lotus japonicus HOM05D017388 ORTHO05D010666 9.0e-08 61.6 154 31.8
Lj1C262G4 Lonicera japonica HOM05D002687 ORTHO05D002052 1.2e-07 61.2 176 29.5
RcHm_v2.0_Chr2g0124701 Rosa chinensis HOM05D010052 ORTHO05D010666 1.2e-07 61.2 101 34.7
Cc01_g08570 Coffea canephora HOM05D002687 ORTHO05D002052 2.0e-07 60.5 197 27.4
RcHm_v2.0_Chr7g0211341 Rosa chinensis HOM05D010052 ORTHO05D010666 2.0e-07 60.5 190 28.4
SGA_v2.0_scaffold100G29631 Striga asiatica HOM05D002687 ORTHO05D002052 2.0e-07 60.5 218 28.9
Cfa012524 Carpinus fangiana HOM05D009874 ORTHO05D010825 2.6e-07 60.1 117 32.5
Haze_08138 Corylus avellana HOM05D009874 ORTHO05D010825 2.6e-07 60.1 146 29.5
Thhalv10002076m.g Eutrema salsugineum HOM05D002687 ORTHO05D002052 2.6e-07 60.1 202 27.2
unitig_8.g3658 Utricularia gibba HOM05D002687 ORTHO05D002052 2.6e-07 60.1 180 29.4
AT2G27260 Arabidopsis thaliana HOM05D002687 ORTHO05D002052 3.4e-07 59.7 199 26.1
COL.COLO4_09298 Corchorus olitorius HOM05D010991 ORTHO05D010825 3.4e-07 59.7 227 26.0
Psat5g260320 Pisum sativum HOM05D002687 ORTHO05D002052 3.4e-07 59.7 185 24.9
BcaB01g03061 Brassica carinata HOM05D002687 ORTHO05D002052 4.4e-07 59.3 207 26.1
CiPaw.14G095900 Carya illinoinensis HOM05D002687 ORTHO05D002052 4.4e-07 59.3 166 25.3
COL.COLO4_09301 Corchorus olitorius HOM05D010991 ORTHO05D010825 4.4e-07 59.3 216 26.4
MSTRG.17685 Avicennia marina HOM05D002687 ORTHO05D002052 5.8e-07 58.9 193 29.0
Nitab4.5_0000020g0110 Nicotiana tabacum HOM05D012176 ORTHO05D014468 5.8e-07 58.9 208 23.1
BcaB01g03060 Brassica carinata HOM05D002687 ORTHO05D002052 7.6e-07 58.5 199 26.1
BcaB02g10079 Brassica carinata HOM05D002687 ORTHO05D002052 7.6e-07 58.5 155 27.7
Ca_09053_v3 Cicer arietinum L. HOM05D013176 ORTHO05D010666 7.6e-07 58.5 205 23.9
Ciclev10029214m.g Citrus clementina HOM05D002687 ORTHO05D002052 1.3e-06 57.8 210 25.2
Phvul.007G268400 Phaseolus vulgaris HOM05D008136 ORTHO05D002052 1.7e-06 57.4 191 23.6
Sabra09G0012300 Salix brachista HOM05D002687 ORTHO05D002052 2.2e-06 57.0 230 24.3
ClCG01G011580 Citrullus lanatus HOM05D002687 ORTHO05D034712 2.9e-06 56.6 157 26.1
HanXRQChr14g0432161 Helianthus annuus HOM05D002687 ORTHO05D002052 2.9e-06 56.6 185 24.3
VMungo1383G3225 Vigna mungo HOM05D013176 ORTHO05D010666 6.4e-06 55.5 171 25.1
QL01p011200 Quercus lobata HOM05D002687 ORTHO05D002052 8.4e-06 55.1 205 23.9


User provided reference genes

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