Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cpa.g.sc104.32 Carica papaya HOM05D003943 ORTHO05D004753 8.0e-146 520.4 261 100.0
TWI77G0554 Tripterygium wilfordii HOM05D003943 ORTHO05D004753 1.4e-137 493.0 261 94.3
TWI74G1172 Tripterygium wilfordii HOM05D003943 ORTHO05D004753 4.0e-137 491.5 261 93.9
Nn2g14305 Nelumbo nucifera HOM05D003943 ORTHO05D004753 5.2e-137 491.1 261 93.5
Manes.01G025400 Manihot esculenta HOM05D003943 ORTHO05D004753 4.4e-136 488.0 261 92.0
ClCG01G015010 Citrullus lanatus HOM05D003943 ORTHO05D004753 5.8e-136 487.6 261 92.7
Gohir.D01G191300 Gossypium hirsutum HOM05D003943 ORTHO05D004753 5.8e-136 487.6 261 91.2
Gorai.002G235200 Gossypium raimondii HOM05D003943 ORTHO05D004753 5.8e-136 487.6 261 91.2
Gohir.A09G134200 Gossypium hirsutum HOM05D003943 ORTHO05D004753 9.8e-136 486.9 261 91.2
Gorai.006G149400 Gossypium raimondii HOM05D003943 ORTHO05D004753 9.8e-136 486.9 261 91.2
Manes.08G033500 Manihot esculenta HOM05D003943 ORTHO05D004753 9.8e-136 486.9 261 91.6
Dinv20358 Davidia involucrata HOM05D003943 ORTHO05D004753 1.3e-135 486.5 261 92.0
TAR623G0676 Trochodendron aralioides HOM05D003943 ORTHO05D004753 1.3e-135 486.5 261 91.6
MELO3C024586.2 Cucumis melo HOM05D003943 ORTHO05D004753 1.7e-135 486.1 261 92.7
CiPaw.10G017400 Carya illinoinensis HOM05D003943 ORTHO05D004753 2.2e-135 485.7 261 92.7
Sed0023950 Sechium edule HOM05D003943 ORTHO05D004753 3.7e-135 485.0 261 92.3
Oeu049654.1 Olea europaea HOM05D003943 ORTHO05D004753 4.9e-135 484.6 261 92.0
THA.LOC104826802 Tarenaya hassleriana HOM05D003943 ORTHO05D004753 4.9e-135 484.6 261 92.3
Gohir.A01G201400 Gossypium hirsutum HOM05D003943 ORTHO05D004753 6.4e-135 484.2 261 90.8
Sed0024685 Sechium edule HOM05D003943 ORTHO05D004753 8.3e-135 483.8 261 92.0
Atru.chr12.911 Acer truncatum HOM05D003943 ORTHO05D004753 1.1e-134 483.4 261 93.1
MSTRG.10894 Avicennia marina HOM05D003943 ORTHO05D004753 1.1e-134 483.4 261 91.2
Atru.chr8.1362 Acer truncatum HOM05D003943 ORTHO05D004753 1.4e-134 483.0 261 92.7
CsaV3_6G041100 Cucumis sativus L. HOM05D003943 ORTHO05D004753 1.9e-134 482.6 261 92.3
TAR633G0404 Trochodendron aralioides HOM05D003943 ORTHO05D004753 1.9e-134 482.6 261 91.2
COL.COLO4_29575 Corchorus olitorius HOM05D003943 ORTHO05D004753 2.4e-134 482.3 261 91.6
Duzib093G1950 Durio zibethinus HOM05D003943 ORTHO05D004753 2.4e-134 482.3 261 90.8
Thecc.05G104300 Theobroma cacao HOM05D003943 ORTHO05D004753 2.4e-134 482.3 261 90.8
Ciclev10012509m.g Citrus clementina HOM05D003943 ORTHO05D004753 3.2e-134 481.9 261 92.3
Actinidia38793 Actinidia chinensis HOM05D003943 ORTHO05D004753 4.1e-134 481.5 261 92.0
CDE10G1025 Ceratophyllum demersum HOM05D003943 ORTHO05D004753 5.4e-134 481.1 261 91.6
Sabra16G0070600 Salix brachista HOM05D003943 ORTHO05D004753 7.1e-134 480.7 261 91.2
Sabra16G0072800 Salix brachista HOM05D003943 ORTHO05D004753 7.1e-134 480.7 261 91.2
unitig_32.g11085 Utricularia gibba HOM05D003943 ORTHO05D004753 7.1e-134 480.7 260 91.2
Oeu039454.1 Olea europaea HOM05D003943 ORTHO05D004753 9.2e-134 480.3 260 91.5
Actinidia21868 Actinidia chinensis HOM05D003943 ORTHO05D004753 1.2e-133 479.9 261 91.2
Eucgr.K02620 Eucalyptus grandis HOM05D003943 ORTHO05D004753 1.2e-133 479.9 261 91.2
PGR004G2105 Punica granatum HOM05D003943 ORTHO05D004753 1.2e-133 479.9 261 91.2
PGR142G4032 Punica granatum HOM05D003943 ORTHO05D004753 1.2e-133 479.9 261 91.2
Potri.016G070400 Populus trichocarpa HOM05D003943 ORTHO05D004753 2.1e-133 479.2 261 90.4
THA.LOC104809953 Tarenaya hassleriana HOM05D003943 ORTHO05D004753 2.7e-133 478.8 261 91.2
GSVIVG01011153001 Vitis vinifera HOM05D003943 ORTHO05D004753 3.5e-133 478.4 260 91.9
Potri.006G203400 Populus trichocarpa HOM05D003943 ORTHO05D004753 1.3e-132 476.5 261 90.4
Rhsim08G0248000 Rhododendron simsii HOM05D003943 ORTHO05D004753 1.3e-132 476.5 261 89.3
Lj6A21G25 Lonicera japonica HOM05D003943 ORTHO05D004753 1.7e-132 476.1 261 90.4
Prupe.4G241300 Prunus persica HOM05D003943 ORTHO05D004753 2.3e-132 475.7 261 90.0
CSS0000599 Camellia sinensis var. sinensis HOM05D003943 ORTHO05D004753 3.0e-132 475.3 258 91.9
Haze_03432 Corylus avellana HOM05D003943 ORTHO05D004753 3.0e-132 475.3 261 91.2
Haze_20185 Corylus avellana HOM05D003943 ORTHO05D004753 3.0e-132 475.3 261 91.2
Migut.I01176 Erythranthe guttata HOM05D003943 ORTHO05D004753 3.0e-132 475.3 261 89.3
Lsat_1_v5_gn_4_88760 Lactuca sativa HOM05D003943 ORTHO05D004753 3.0e-132 475.3 261 90.4
vmacro18760 Vaccinium macrocarpon HOM05D003943 ORTHO05D004753 5.1e-132 474.6 265 88.7
Lj6A3G40 Lonicera japonica HOM05D003943 ORTHO05D004753 8.6e-132 473.8 260 90.4
Hma1.2p1_1104F.1_g257380 Hydrangea macrophylla HOM05D003943 ORTHO05D004753 1.5e-131 473.0 259 91.1
Lsat_1_v5_gn_6_32361 Lactuca sativa HOM05D003943 ORTHO05D004753 1.5e-131 473.0 260 90.4
RcHm_v2.0_Chr2g0122251 Rosa chinensis HOM05D003943 ORTHO05D004753 1.9e-131 472.6 261 89.3
RcHm_v2.0_Chr4g0409741 Rosa chinensis HOM05D003943 ORTHO05D004753 1.9e-131 472.6 261 89.3
Aa31sc52G210 Aethionema arabicum HOM05D003943 ORTHO05D004753 2.5e-131 472.2 261 89.7
VMungo0331G0074 Vigna mungo HOM05D003943 ORTHO05D004753 2.5e-131 472.2 261 89.3
VMungo0720G1310 Vigna mungo HOM05D003943 ORTHO05D004753 2.5e-131 472.2 261 89.3
SalBow6G5742 Salvia bowleyana HOM05D003943 ORTHO05D004753 3.3e-131 471.9 261 89.3
arahy.Tifrunner.gnm1.ann1.07MWYB Arachis hypogaea HOM05D003943 ORTHO05D004753 4.3e-131 471.5 261 88.9
arahy.Tifrunner.gnm1.ann1.T05T6P Arachis hypogaea HOM05D003943 ORTHO05D004753 4.3e-131 471.5 261 88.9
QL07p036748 Quercus lobata HOM05D003943 ORTHO05D004753 4.3e-131 471.5 260 90.0
Sopen09g036280 Solanum pennellii HOM05D003943 ORTHO05D004753 4.3e-131 471.5 261 90.0
CANSAT64G2459 Cannabis sativa HOM05D003943 ORTHO05D004753 5.6e-131 471.1 261 88.5
FvH4_1g24730 Fragaria vesca HOM05D003943 ORTHO05D004753 5.6e-131 471.1 261 88.9
FvH4_1g24810 Fragaria vesca HOM05D003943 ORTHO05D004753 5.6e-131 471.1 261 88.9
FAN19G3070 Fragaria x ananassa HOM05D003943 ORTHO05D004753 5.6e-131 471.1 261 88.9
Glyma.02G196900 Glycine max HOM05D003943 ORTHO05D004753 5.6e-131 471.1 261 88.9
HPP92_002146 Vanilla planifolia HOM05D003943 ORTHO05D004753 5.6e-131 471.1 256 90.2
Phvul.007G268100 Phaseolus vulgaris HOM05D003943 ORTHO05D004753 9.5e-131 470.3 261 88.9
Phvul.010G103000 Phaseolus vulgaris HOM05D003943 ORTHO05D004753 9.5e-131 470.3 261 88.9
Sp6g36490 Schrenkiella parvula HOM05D003943 ORTHO05D004753 9.5e-131 470.3 261 89.3
ATR0772G207 Amborella trichopoda HOM05D003943 ORTHO05D004753 1.2e-130 469.9 261 88.1
PGSC0003DMG400021625 Solanum tuberosum HOM05D003943 ORTHO05D004753 1.2e-130 469.9 261 89.7
AT5G06360 Arabidopsis thaliana HOM05D003943 ORTHO05D004753 1.6e-130 469.5 261 89.3
Cfa010504 Carpinus fangiana HOM05D003943 ORTHO05D004753 1.6e-130 469.5 261 89.7
Glyma.10G002300 Glycine max HOM05D003943 ORTHO05D004753 2.8e-130 468.8 261 88.1
Lalb_Chr02g0144091 Lupinus albus HOM05D003943 ORTHO05D004753 2.8e-130 468.8 261 88.9
Cc04_g00390 Coffea canephora HOM05D003943 ORTHO05D004753 3.6e-130 468.4 269 87.4
Glyma.10G081400 Glycine max HOM05D003943 ORTHO05D004753 6.2e-130 467.6 261 87.7
HanXRQChr09g0277391 Helianthus annuus HOM05D003943 ORTHO05D004753 6.2e-130 467.6 261 89.7
Hund10875 Selenicereus undatus HOM05D003943 ORTHO05D004753 8.1e-130 467.2 261 88.9
Lalb_Chr11g0067891 Lupinus albus HOM05D003943 ORTHO05D004753 1.1e-129 466.8 261 88.5
HanXRQChr17g0533251 Helianthus annuus HOM05D003943 ORTHO05D004753 1.4e-129 466.5 261 89.3
MD05G1235300 Malus domestica HOM05D003943 ORTHO05D004753 1.4e-129 466.5 261 87.7
SGA_v2.0_scaffold71G24009 Striga asiatica HOM05D003943 ORTHO05D004753 6.8e-129 464.2 261 88.5
Peaxi162Scf00286g00330 Petunia axillaris HOM05D003943 ORTHO05D004753 1.2e-128 463.4 264 87.9
Sabra06G0156600 Salix brachista HOM05D003943 ORTHO05D004753 1.2e-128 463.4 285 82.8
MD10G1211300 Malus domestica HOM05D003943 ORTHO05D004753 1.5e-128 463.0 261 87.4
AL6G16440 Arabidopsis lyrata HOM05D003943 ORTHO05D004753 2.6e-128 462.2 261 88.5
Ca_16636_v3 Cicer arietinum L. HOM05D003943 ORTHO05D004753 5.8e-128 461.1 261 87.0
C09p70420 Brassica napus HOM05D003943 ORTHO05D004753 1.3e-127 459.9 260 87.7
BolC9t59788H Brassica oleracea HOM05D003943 ORTHO05D004753 1.3e-127 459.9 260 87.7
Carub.0006s0525 Capsella rubella HOM05D003943 ORTHO05D004753 1.3e-127 459.9 261 88.1
Thhalv10014439m.g Eutrema salsugineum HOM05D003943 ORTHO05D004753 1.3e-127 459.9 261 87.4
Lj1g0010263 Lotus japonicus HOM05D003943 ORTHO05D004753 1.3e-127 459.9 261 85.4
Aqoxy1G00659 Aquilegia oxysepala HOM05D003943 ORTHO05D004753 1.7e-127 459.5 261 86.6
C02p02670 Brassica napus HOM05D003943 ORTHO05D004753 1.7e-127 459.5 261 87.4
BolC2t06233H Brassica oleracea HOM05D003943 ORTHO05D004753 1.7e-127 459.5 261 87.4
BcaB05g21673 Brassica carinata HOM05D003943 ORTHO05D004753 2.2e-127 459.1 261 87.0
Pp3c7_2280 Physcomitrium patens HOM05D003943 ORTHO05D004753 2.2e-127 459.1 261 85.8
BcaC03g13169 Brassica carinata HOM05D003943 ORTHO05D004753 2.9e-127 458.8 261 87.0
Ca_11700_v3 Cicer arietinum L. HOM05D003943 ORTHO05D004753 6.4e-127 457.6 261 86.6
A10p30010 Brassica napus HOM05D003943 ORTHO05D004753 1.1e-126 456.8 259 87.6
BraA10t45041Z Brassica rapa HOM05D003943 ORTHO05D004753 1.1e-126 456.8 259 87.6
ECA233G4676 Erigeron canadensis HOM05D003943 ORTHO05D004753 1.1e-126 456.8 261 87.4
BraA02t04878Z Brassica rapa HOM05D003943 ORTHO05D004753 2.4e-126 455.7 260 86.9
CARHR207110 Cardamine hirsuta HOM05D003943 ORTHO05D004753 2.4e-126 455.7 261 84.7
Nitab4.5_0008073g0030 Nicotiana tabacum HOM05D003943 ORTHO05D004753 3.2e-126 455.3 261 87.4
Psat6g114680 Pisum sativum HOM05D003943 ORTHO05D004753 7.1e-126 454.1 261 85.4
PSO384G4082 Papaver somniferum HOM05D003943 ORTHO05D004753 1.2e-125 453.4 261 84.7
Mapoly0020s0123 Marchantia polymorpha HOM05D003943 ORTHO05D004753 2.1e-125 452.6 261 85.1
PSO339G3654 Papaver somniferum HOM05D003943 ORTHO05D004753 2.1e-125 452.6 261 84.3
EL10Ac5g12966 Beta vulgaris HOM05D003943 ORTHO05D004753 2.7e-125 452.2 260 86.9
FAN23G0735 Fragaria x ananassa HOM05D003943 ORTHO05D004753 4.6e-125 451.4 277 82.7
SMO367G0573 Selaginella moellendorffii HOM05D003943 ORTHO05D004753 7.8e-125 450.7 261 83.5
TPR.G5876 Trifolium pratense HOM05D003943 ORTHO05D004753 7.8e-125 450.7 261 86.2
AUR62036383 Chenopodium quinoa HOM05D003943 ORTHO05D004753 5.1e-124 448.0 261 85.1
Ah.12g059190 Amaranthus hybridus HOM05D003943 ORTHO05D004753 1.9e-123 446.0 261 84.3
Medtr3g088865 Medicago truncatula HOM05D003943 ORTHO05D004753 1.9e-123 446.0 261 83.5
AagrBONN_evm.TU.Sc2ySwM_369.90 Anthoceros agrestis HOM05D003943 ORTHO05D004753 4.3e-123 444.9 261 82.4
CiPaw.09G020900 Carya illinoinensis HOM05D003943 ORTHO05D004753 1.6e-122 443.0 240 92.1
CBR_g12036 Chara braunii HOM05D003943 ORTHO05D004753 4.7e-122 441.4 261 81.6
AUR62030745 Chenopodium quinoa HOM05D003943 ORTHO05D004753 6.2e-122 441.0 256 84.8
Medtr0508s0010 Medicago truncatula HOM05D003943 ORTHO05D004753 2.4e-121 439.1 261 83.5
Lj2g0010046 Lotus japonicus HOM05D003943 ORTHO05D004753 3.4e-120 435.3 261 82.8
TPR.G2813 Trifolium pratense HOM05D003943 ORTHO05D004753 4.9e-119 431.4 276 79.7
FAN19G1372 Fragaria x ananassa HOM05D003943 ORTHO05D004753 1.9e-118 429.5 241 88.0
FAN28G2380 Fragaria x ananassa HOM05D003943 ORTHO05D004753 5.4e-118 427.9 241 87.6
Os07g0673100 Oryza sativa ssp. japonica HOM05D003943 ORTHO05D004753 9.3e-118 427.2 261 82.0
Gohir.D09G130700 Gossypium hirsutum HOM05D003943 ORTHO05D004753 3.0e-116 422.2 261 82.4
MCO03G138 Micromonas commoda HOM05D003943 ORTHO05D004753 1.1e-113 413.7 261 74.7
PRCOL_00000915 Prasinoderma coloniale HOM05D003943 ORTHO05D004753 4.9e-111 404.8 261 77.4
Zm00001eb111290 Zea mays HOM05D003943 ORTHO05D004753 8.4e-111 404.1 261 77.8
Zm00001eb330440 Zea mays HOM05D003943 ORTHO05D004753 8.4e-111 404.1 261 77.8
Cre12.g507300 Chlamydomonas reinhardtii HOM05D003943 ORTHO05D004753 1.1e-110 403.7 261 76.6
AagrBONN_evm.TU.Sc2ySwM_340.394 Anthoceros agrestis HOM05D003943 ORTHO05D004753 7.9e-109 397.5 266 75.6
Dinv37798 Davidia involucrata HOM05D003943 ORTHO05D004753 2.3e-108 396.0 213 90.6
Rhsim05G0206200 Rhododendron simsii HOM05D003943 ORTHO05D004753 2.3e-108 396.0 261 78.5
PGSC0003DMG400029099 Solanum tuberosum HOM05D003943 ORTHO05D004753 3.0e-108 395.6 261 78.5
Sc14g0006610 Simmondsia chinensis HOM05D003943 ORTHO05D004753 3.6e-106 388.7 222 87.4
FAN26G0481 Fragaria x ananassa HOM05D003943 ORTHO05D004753 3.1e-105 385.6 337 62.3
unitig_748.g7832 Utricularia gibba HOM05D003943 ORTHO05D004753 1.2e-104 383.6 201 92.0
CAN.G710.48 Capsicum annuum HOM05D003943 ORTHO05D004753 1.5e-104 383.3 309 68.3
DCAR_016668 Daucus carota HOM05D003943 ORTHO05D004753 3.4e-104 382.1 254 76.4
DCAR_017903 Daucus carota HOM05D003943 ORTHO05D004753 1.7e-103 379.8 240 79.2
SEGI_04875 Sequoiadendron giganteum HOM05D003943 ORTHO05D004753 2.1e-98 362.8 195 88.2
Aa31LG3G5080 Aethionema arabicum HOM05D003943 ORTHO05D004753 3.7e-98 362.1 200 89.0
Nitab4.5_0003291g0080 Nicotiana tabacum HOM05D003943 ORTHO05D004753 3.0e-92 342.4 256 73.0
Haze_27191 Corylus avellana HOM05D003943 ORTHO05D004753 7.4e-91 337.8 260 64.6
FAN23G1436 Fragaria x ananassa HOM05D003943 ORTHO05D004753 2.2e-87 326.2 177 88.1
Peaxi162Scf01149g00220 Petunia axillaris HOM05D003943 ORTHO05D004753 2.6e-80 302.8 161 89.4
Cfa024104 Carpinus fangiana HOM05D003943 ORTHO05D123184 2.7e-69 266.2 229 57.6
TPR.G6300 Trifolium pratense HOM05D003943 ORTHO05D004753 1.7e-66 256.9 240 57.9
CDE10G0110 Ceratophyllum demersum HOM05D003943 ORTHO05D004753 1.4e-60 237.3 135 89.6
BcaC06g32370 Brassica carinata HOM05D003943 ORTHO05D004753 4.8e-58 228.8 142 82.4
BcaNung06320 Brassica carinata HOM05D003943 ORTHO05D004753 8.2e-58 228.0 143 81.8
CDE10G0220 Ceratophyllum demersum HOM05D003943 ORTHO05D004753 1.3e-55 220.7 113 92.9
SHI12410 Sapria himalayana HOM05D003943 ORTHO05D004753 5.9e-48 195.3 98 92.9
RcHm_v2.0_Chr7g0216551 Rosa chinensis HOM05D003943 ORTHO05D004753 2.0e-43 180.3 271 46.5
Lsat_1_v5_gn_8_162181 Lactuca sativa HOM05D003943 ORTHO05D004753 7.0e-41 171.8 117 76.1
Duzib106G1686 Durio zibethinus HOM05D003943 ORTHO05D004753 2.7e-40 169.9 196 51.0
EL10Ac3g06422 Beta vulgaris HOM05D003943 ORTHO05D004753 1.1e-38 164.5 135 65.2
RcHm_v2.0_Chr7g0216591 Rosa chinensis HOM05D003943 ORTHO05D004753 2.5e-38 163.3 108 75.9
HanXRQChr03g0072971 Helianthus annuus HOM05D003943 ORTHO05D004753 1.5e-35 154.1 92 81.5
BcaC01g01015 Brassica carinata HOM05D003943 ORTHO05D004753 9.8e-35 151.4 100 79.0
Lj9C540G13 Lonicera japonica HOM05D003943 ORTHO05D004753 2.4e-33 146.7 195 46.2
SHI12413 Sapria himalayana HOM05D003943 ORTHO05D004753 3.3e-30 136.3 81 82.7
Lsat_1_v5_gn_6_65181 Lactuca sativa HOM05D003943 ORTHO05D000236 3.6e-29 132.9 83 81.9
Actinidia21636 Actinidia chinensis HOM05D003943 ORTHO05D004753 9.2e-25 118.2 111 61.3
SHI12416 Sapria himalayana HOM05D001600 ORTHO05D001502 7.3e-22 108.6 64 85.9
RcHm_v2.0_Chr7g0216581 Rosa chinensis HOM05D003943 ORTHO05D004753 1.9e-14 84.0 81 58.0
SHI17182 Sapria himalayana HOM05D000004 ORTHO05D367797 2.6e-11 73.6 56 71.4
CAN.G1001.28 Capsicum annuum HOM05D003943 ORTHO05D005733 2.9e-10 70.1 59 62.7
SHI30650 Sapria himalayana HOM05D004596 ORTHO05D005853 1.2e-08 64.7 62 61.3
Nitab4.5_0006519g0020 Nicotiana tabacum HOM05D000032 ORTHO05D005217 2.7e-08 63.5 52 67.3
C03p87270 Brassica napus HOM05D000836 ORTHO05D000709 4.6e-08 62.8 44 72.7
SHI32256 Sapria himalayana HOM05D003943 ORTHO05D001502 6.0e-08 62.4 35 82.9
BcaC05g26689 Brassica carinata HOM05D003943 ORTHO05D004753 2.5e-06 57.0 38 68.4
C04p30500 Brassica napus HOM05D002284 ORTHO05D033292 5.6e-06 55.8 34 76.5


User provided reference genes

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