Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cpa.g.sc103.87 Carica papaya HOM05D007263 ORTHO05D009187 2.4e-159 565.5 285 100.0
Cpa.g.c47634 Carica papaya HOM05D007263 ORTHO05D009187 1.3e-53 214.2 118 91.5
Eucgr.J00617 Eucalyptus grandis HOM05D007263 ORTHO05D009187 6.9e-34 148.7 301 39.9
TWI79G1263 Tripterygium wilfordii HOM05D007263 ORTHO05D009187 6.9e-34 148.7 296 37.5
Atru.chr3.2913 Acer truncatum HOM05D007263 ORTHO05D009187 4.5e-33 146.0 273 40.3
Cfa010246 Carpinus fangiana HOM05D007263 ORTHO05D009187 5.0e-32 142.5 292 38.0
Sabra09G0122700 Salix brachista HOM05D007263 ORTHO05D009187 6.5e-32 142.1 294 37.8
Ciclev10016536m.g Citrus clementina HOM05D007263 ORTHO05D009187 1.4e-31 141.0 299 37.8
Manes.09G111800 Manihot esculenta HOM05D007263 ORTHO05D009187 1.4e-31 141.0 288 38.9
Actinidia06355 Actinidia chinensis HOM05D007263 ORTHO05D009187 2.5e-31 140.2 300 38.7
TAR623G1137 Trochodendron aralioides HOM05D007263 ORTHO05D009187 3.2e-31 139.8 288 39.2
Dinv32124 Davidia involucrata HOM05D007263 ORTHO05D009187 1.2e-30 137.9 295 36.3
Glyma.20G058100 Glycine max HOM05D007263 ORTHO05D009187 1.0e-29 134.8 304 34.5
MBI19_g09308_MAGBIO Magnolia biondii HOM05D007263 ORTHO05D009187 6.7e-29 132.1 274 36.1
Gohir.A05G075400 Gossypium hirsutum HOM05D007263 ORTHO05D009187 8.8e-29 131.7 291 36.1
Duzib168G0238 Durio zibethinus HOM05D007263 ORTHO05D009187 1.1e-28 131.3 292 36.6
GSVIVG01037444001 Vitis vinifera HOM05D000101 ORTHO05D000089 1.5e-28 131.0 285 37.9
PGR119G0910 Punica granatum HOM05D007263 ORTHO05D009187 2.0e-28 130.6 232 37.1
FvH4_3g27180 Fragaria vesca HOM05D007263 ORTHO05D009187 9.7e-28 128.3 276 37.3
Nn6g32384 Nelumbo nucifera HOM05D007263 ORTHO05D009187 9.7e-28 128.3 228 37.3
Gohir.D05G078200 Gossypium hirsutum HOM05D007263 ORTHO05D009187 1.3e-27 127.9 287 36.9
Gorai.009G079700 Gossypium raimondii HOM05D007263 ORTHO05D009187 1.3e-27 127.9 287 36.9
Lj6g0015831 Lotus japonicus HOM05D007263 ORTHO05D009187 1.7e-27 127.5 283 37.1
FAN16G1710 Fragaria x ananassa HOM05D007263 ORTHO05D009187 2.2e-27 127.1 260 37.3
Lalb_Chr14g0363361 Lupinus albus HOM05D007263 ORTHO05D009187 2.2e-27 127.1 132 50.8
RcHm_v2.0_Chr5g0049851 Rosa chinensis HOM05D007263 ORTHO05D009187 2.2e-27 127.1 286 35.7
Potri.009G156900 Populus trichocarpa HOM05D007263 ORTHO05D009187 2.8e-27 126.7 150 50.0
Hma1.2p1_0994F.1_g245580 Hydrangea macrophylla HOM05D007263 ORTHO05D009187 3.7e-27 126.3 233 39.5
COL.COLO4_25292 Corchorus olitorius HOM05D007263 ORTHO05D009187 4.8e-27 125.9 279 36.6
MD11G1181300 Malus domestica HOM05D007263 ORTHO05D009187 6.3e-27 125.6 276 35.1
Thecc.09G263800 Theobroma cacao HOM05D007263 ORTHO05D009187 1.1e-26 124.8 291 35.4
VMungo0540G1942 Vigna mungo HOM05D007263 ORTHO05D009187 1.1e-26 124.8 269 34.9
CiPaw.13G127300 Carya illinoinensis HOM05D007263 ORTHO05D009187 5.3e-26 122.5 273 35.9
Phvul.L004437 Phaseolus vulgaris HOM05D007263 ORTHO05D009187 5.3e-26 122.5 262 35.5
FAN11G0122 Fragaria x ananassa HOM05D007263 ORTHO05D009187 7.0e-26 122.1 279 36.9
Rhsim01G0197200 Rhododendron simsii HOM05D007263 ORTHO05D009187 9.1e-26 121.7 232 38.4
Potri.009G156700 Populus trichocarpa HOM05D007263 ORTHO05D009187 3.5e-25 119.8 256 37.5
vmacro23061 Vaccinium macrocarpon HOM05D007263 ORTHO05D009187 5.9e-25 119.0 166 44.6
CDE07G0519 Ceratophyllum demersum HOM05D007263 ORTHO05D009187 1.0e-24 118.2 138 44.9
Prupe.6G154100 Prunus persica HOM05D007263 ORTHO05D009187 1.0e-24 118.2 283 33.6
Sed0004996 Sechium edule HOM05D007263 ORTHO05D009187 1.3e-24 117.9 134 48.5
HanXRQChr03g0085111 Helianthus annuus HOM05D007263 ORTHO05D009187 1.7e-24 117.5 268 34.0
ClCG02G024290 Citrullus lanatus HOM05D007263 ORTHO05D009187 2.9e-24 116.7 139 47.5
PSO339G3146 Papaver somniferum HOM05D007263 ORTHO05D009187 2.9e-24 116.7 278 34.5
Medtr3g079520 Medicago truncatula HOM05D007263 ORTHO05D009187 6.5e-24 115.5 302 33.4
Medtr3g479600 Medicago truncatula HOM05D007263 ORTHO05D009187 6.5e-24 115.5 302 33.4
Ca_16255_v3 Cicer arietinum L. HOM05D007263 ORTHO05D009187 1.1e-23 114.8 290 32.4
Lsat_1_v5_gn_6_85860 Lactuca sativa HOM05D007263 ORTHO05D009187 1.9e-23 114.0 271 33.6
PSO384G0367 Papaver somniferum HOM05D007263 ORTHO05D009187 1.9e-23 114.0 260 35.0
CSS0014161 Camellia sinensis var. sinensis HOM05D007263 ORTHO05D009187 3.2e-23 113.2 272 35.7
THA.LOC104816966 Tarenaya hassleriana HOM05D007263 ORTHO05D009187 4.2e-23 112.8 166 39.8
Sc06g0006180 Simmondsia chinensis HOM05D007263 ORTHO05D009187 7.2e-23 112.1 130 46.2
QL01p020523 Quercus lobata HOM05D007263 ORTHO05D009187 2.7e-22 110.2 255 36.9
CANSAT54G3001 Cannabis sativa HOM05D007263 ORTHO05D009187 4.7e-22 109.4 243 32.9
FAN25G1860 Fragaria x ananassa HOM05D007263 ORTHO05D009187 1.0e-21 108.2 303 32.7
ATR0068G111 Amborella trichopoda HOM05D007263 ORTHO05D009187 1.8e-21 107.5 132 43.2
Hund18825 Selenicereus undatus HOM05D007263 ORTHO05D009187 3.9e-21 106.3 275 30.9
MSTRG.17655 Avicennia marina HOM05D007263 ORTHO05D009187 6.7e-21 105.5 229 33.2
Haze_23636 Corylus avellana HOM05D007263 ORTHO05D009187 8.8e-21 105.1 247 34.8
Sp4g00690 Schrenkiella parvula HOM05D007263 ORTHO05D009187 1.5e-20 104.4 213 33.8
SalBow3G2238 Salvia bowleyana HOM05D007263 ORTHO05D009187 3.3e-20 103.2 232 31.5
ECA240G3643 Erigeron canadensis HOM05D000684 ORTHO05D000688 7.4e-20 102.1 231 34.2
BcaC07g41154 Brassica carinata HOM05D007263 ORTHO05D009187 9.7e-20 101.7 208 31.7
BolC8t51703H Brassica oleracea HOM05D007263 ORTHO05D009187 9.7e-20 101.7 208 31.7
A09p58160 Brassica napus HOM05D007263 ORTHO05D009187 1.3e-19 101.3 133 40.6
Thhalv10000320m.g Eutrema salsugineum HOM05D007263 ORTHO05D009187 1.3e-19 101.3 212 34.0
BraA09t41205Z Brassica rapa HOM05D007263 ORTHO05D009187 1.7e-19 100.9 133 40.6
AUR62001600 Chenopodium quinoa HOM05D007263 ORTHO05D009187 2.2e-19 100.5 225 29.3
DCAR_028386 Daucus carota HOM05D007263 ORTHO05D009187 2.2e-19 100.5 269 31.6
Oeu032066.1 Olea europaea HOM05D007263 ORTHO05D009187 2.2e-19 100.5 139 46.0
AUR62020179 Chenopodium quinoa HOM05D007263 ORTHO05D009187 4.8e-19 99.4 136 40.4
SGA_v2.0_scaffold16G07576 Striga asiatica HOM05D007263 ORTHO05D009187 1.1e-18 98.2 145 44.1
SGA_v2.0_scaffold3G01630 Striga asiatica HOM05D007263 ORTHO05D009187 1.1e-18 98.2 145 44.1
Os11g0127800 Oryza sativa ssp. japonica HOM05D007263 ORTHO05D009187 2.4e-18 97.1 235 31.5
Zm00001eb163720 Zea mays HOM05D007263 ORTHO05D009187 2.4e-18 97.1 152 38.8
AL4G10720 Arabidopsis lyrata HOM05D007263 ORTHO05D009187 7.0e-18 95.5 133 40.6
Pp3c1_27160 Physcomitrium patens HOM05D007263 ORTHO05D009187 9.1e-18 95.1 141 37.6
EL10Ac7g16235 Beta vulgaris HOM05D007263 ORTHO05D009187 1.2e-17 94.7 284 29.2
AT2G21530 Arabidopsis thaliana HOM05D007263 ORTHO05D009187 1.6e-17 94.4 133 40.6
Carub.0004s0057 Capsella rubella HOM05D007263 ORTHO05D009187 1.6e-17 94.4 133 39.8
CAN.G651.2 Capsicum annuum HOM05D007263 ORTHO05D009187 1.6e-17 94.4 124 44.4
SMO271G0152 Selaginella moellendorffii HOM05D007263 ORTHO05D009187 2.0e-17 94.0 122 42.6
Peaxi162Scf00342g00119 Petunia axillaris HOM05D007263 ORTHO05D009187 2.6e-17 93.6 119 44.5
CARHR112460 Cardamine hirsuta HOM05D007263 ORTHO05D009187 3.5e-17 93.2 119 42.9
Solyc01g009080.4 Solanum lycopersicum HOM05D007263 ORTHO05D009187 4.5e-17 92.8 131 43.5
Sopen01g004570 Solanum pennellii HOM05D007263 ORTHO05D009187 4.5e-17 92.8 131 43.5
Aa31LG7G14990 Aethionema arabicum HOM05D007263 ORTHO05D009187 7.7e-17 92.0 123 41.5
PGSC0003DMG400022700 Solanum tuberosum HOM05D007263 ORTHO05D009187 1.0e-16 91.7 182 36.3
Cc01_g07450 Coffea canephora HOM05D007263 ORTHO05D009187 1.7e-16 90.9 113 44.2
CSS0024406 Camellia sinensis var. sinensis HOM05D007263 ORTHO05D009187 2.2e-16 90.5 254 32.3
Pp3c2_15500 Physcomitrium patens HOM05D007263 ORTHO05D009187 2.2e-16 90.5 122 39.3
arahy.Tifrunner.gnm1.ann1.S2FUN4 Arachis hypogaea HOM05D007263 ORTHO05D009187 2.9e-16 90.1 103 53.4
MELO3C014714.2 Cucumis melo HOM05D007263 ORTHO05D009187 2.9e-16 90.1 107 45.8
SEGI_12571 Sequoiadendron giganteum HOM05D007263 ORTHO05D009187 2.9e-16 90.1 125 40.8
arahy.Tifrunner.gnm1.ann1.TU72Q6 Arachis hypogaea HOM05D007263 ORTHO05D009187 3.8e-16 89.7 103 53.4
Psat5g112360 Pisum sativum HOM05D007263 ORTHO05D009187 3.8e-16 89.7 115 47.0
SGA_v2.0_scaffold29G12128 Striga asiatica HOM05D000563 ORTHO05D000536 3.8e-16 89.7 206 31.1
Mapoly0061s0077 Marchantia polymorpha HOM05D007263 ORTHO05D009187 8.5e-16 88.6 113 44.2
unitig_8.g2984 Utricularia gibba HOM05D007263 ORTHO05D009187 8.5e-16 88.6 117 41.9
TPR.G9589 Trifolium pratense HOM05D007263 ORTHO05D009187 2.1e-14 84.0 252 31.3
CsaV3_4G017420 Cucumis sativus L. HOM05D007263 ORTHO05D009187 4.7e-14 82.8 139 36.0
Nitab4.5_0000428g0130 Nicotiana tabacum HOM05D007263 ORTHO05D009187 8.0e-14 82.0 272 30.9
Migut.N02412 Erythranthe guttata HOM05D007263 ORTHO05D009187 7.5e-12 75.5 104 41.3
Os12g0124000 Oryza sativa ssp. japonica HOM05D007263 ORTHO05D009187 1.8e-10 70.9 82 42.7
Sabra04G0132300 Salix brachista HOM05D000052 ORTHO05D001127 2.4e-10 70.5 50 66.0
PRCOL_00003243 Prasinoderma coloniale HOM05D007263 ORTHO05D009187 7.7e-09 65.5 59 54.2
MCO16G316 Micromonas commoda HOM05D007263 ORTHO05D009187 5.5e-07 59.3 64 43.8
Nitab4.5_0002300g0100 Nicotiana tabacum HOM05D007263 ORTHO05D009187 2.1e-06 57.4 246 28.0


User provided reference genes

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