Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cpa.g.sc101.45 Carica papaya HOM05D000350 ORTHO05D010906 1.1e-99 366.7 188 100.0
Cpa.g.sc123.27 Carica papaya HOM05D000350 ORTHO05D022227 4.0e-38 162.2 113 74.3
Cpa.g.sc128.6 Carica papaya HOM05D000350 ORTHO05D000228 1.9e-27 126.7 141 53.9
Atru.chr11.1818 Acer truncatum HOM05D000350 ORTHO05D000228 4.6e-18 95.5 93 52.7
Ciclev10031757m.g Citrus clementina HOM05D000350 ORTHO05D000228 8.7e-17 91.3 99 55.6
Duzib251G0008 Durio zibethinus HOM05D000350 ORTHO05D000228 1.8e-14 83.6 103 51.5
Sabra11G0037800 Salix brachista HOM05D000350 ORTHO05D000228 6.9e-14 81.6 105 46.7
Potri.011G055500 Populus trichocarpa HOM05D000350 ORTHO05D000228 1.5e-13 80.5 105 45.7
COL.COLO4_22986 Corchorus olitorius HOM05D000350 ORTHO05D000228 2.6e-13 79.7 93 50.5
Potri.004G046300 Populus trichocarpa HOM05D000350 ORTHO05D000228 3.4e-13 79.3 102 43.1
Gorai.007G036800 Gossypium raimondii HOM05D000350 ORTHO05D000228 4.5e-13 79.0 87 50.6
Oeu047018.1 Olea europaea HOM05D000350 ORTHO05D000228 4.5e-13 79.0 110 44.5
GSVIVG01020011001 Vitis vinifera HOM05D000350 ORTHO05D000228 5.8e-13 78.6 86 54.7
Sed0009449 Sechium edule HOM05D000350 ORTHO05D000228 7.6e-13 78.2 168 34.5
Atru.chr9.2266 Acer truncatum HOM05D000350 ORTHO05D000228 9.9e-13 77.8 93 51.6
Atru.chr9.2274 Acer truncatum HOM05D000350 ORTHO05D000228 9.9e-13 77.8 93 51.6
Gohir.A12G176600 Gossypium hirsutum HOM05D000350 ORTHO05D000228 1.3e-12 77.4 99 46.5
Thecc.02G350300 Theobroma cacao HOM05D000350 ORTHO05D000228 1.3e-12 77.4 102 49.0
Cfa018958 Carpinus fangiana HOM05D000350 ORTHO05D000228 1.7e-12 77.0 98 49.0
DCAR_016540 Daucus carota HOM05D000350 ORTHO05D000228 1.7e-12 77.0 100 49.0
Duzib068G0007 Durio zibethinus HOM05D000350 ORTHO05D000228 2.2e-12 76.6 147 37.4
Duzib205G1598 Durio zibethinus HOM05D000350 ORTHO05D000228 2.2e-12 76.6 97 51.5
Lsat_1_v5_gn_5_19421 Lactuca sativa HOM05D000350 ORTHO05D000228 2.9e-12 76.3 159 34.6
Thecc.03G084500 Theobroma cacao HOM05D000350 ORTHO05D000228 2.9e-12 76.3 87 52.9
CiPaw.11G042900 Carya illinoinensis HOM05D000350 ORTHO05D000228 3.8e-12 75.9 175 34.3
ClCG06G016250 Citrullus lanatus HOM05D000350 ORTHO05D000228 3.8e-12 75.9 109 37.6
Duzib084G1417 Durio zibethinus HOM05D000350 ORTHO05D000228 3.8e-12 75.9 88 52.3
DCAR_021524 Daucus carota HOM05D000350 ORTHO05D000228 6.4e-12 75.1 131 40.5
Manes.14G077200 Manihot esculenta HOM05D000350 ORTHO05D000228 6.4e-12 75.1 87 48.3
Haze_07340 Corylus avellana HOM05D000350 ORTHO05D000228 8.4e-12 74.7 98 48.0
Manes.06G093900 Manihot esculenta HOM05D000350 ORTHO05D000228 8.4e-12 74.7 98 45.9
COL.COLO4_00362 Corchorus olitorius HOM05D000350 ORTHO05D000228 1.1e-11 74.3 88 48.9
Gohir.D12G179300 Gossypium hirsutum HOM05D000350 ORTHO05D000228 1.1e-11 74.3 99 45.5
Gorai.008G192400 Gossypium raimondii HOM05D000350 ORTHO05D000228 1.1e-11 74.3 99 45.5
Duzib268G0342 Durio zibethinus HOM05D000350 ORTHO05D000228 1.4e-11 73.9 102 48.0
Nitab4.5_0004103g0020 Nicotiana tabacum HOM05D000350 ORTHO05D000228 1.9e-11 73.6 119 37.8
TAR371G0739 Trochodendron aralioides HOM05D000350 ORTHO05D000228 2.4e-11 73.2 86 48.8
Cpa.g.sc1815.2 Carica papaya HOM05D000350 ORTHO05D000228 3.2e-11 72.8 124 39.5
Medtr4g108370 Medicago truncatula HOM05D000350 ORTHO05D000228 3.2e-11 72.8 90 46.7
CAN.G628.26 Capsicum annuum HOM05D000350 ORTHO05D000228 4.2e-11 72.4 109 40.4
Cc04_g16910 Coffea canephora HOM05D000350 ORTHO05D000228 4.2e-11 72.4 89 43.8
Cpa.g.sc2.80 Carica papaya HOM05D008870 ORTHO05D010906 5.4e-11 72.0 76 50.0
MELO3C017168.2 Cucumis melo HOM05D000350 ORTHO05D000228 5.4e-11 72.0 98 39.8
CsaV3_1G002280 Cucumis sativus L. HOM05D000350 ORTHO05D000228 5.4e-11 72.0 98 39.8
Peaxi162Scf00274g00082 Petunia axillaris HOM05D000350 ORTHO05D000228 5.4e-11 72.0 94 42.6
VMungo1215G0148 Vigna mungo HOM05D000350 ORTHO05D000228 5.4e-11 72.0 106 44.3
CAN.G407.118 Capsicum annuum HOM05D000350 ORTHO05D000228 7.1e-11 71.6 90 43.3
Cpa.g.sc24.62 Carica papaya HOM05D008870 ORTHO05D010906 9.3e-11 71.2 83 47.0
Eucgr.B00471 Eucalyptus grandis HOM05D000350 ORTHO05D000228 9.3e-11 71.2 152 38.2
QL10p016556 Quercus lobata HOM05D000350 ORTHO05D000228 9.3e-11 71.2 94 45.7
GSVIVG01008023001 Vitis vinifera HOM05D000350 ORTHO05D000228 9.3e-11 71.2 144 36.8
MSTRG.4421 Avicennia marina HOM05D000350 ORTHO05D000228 1.2e-10 70.9 156 34.0
Psat4g053160 Pisum sativum HOM05D000350 ORTHO05D000228 1.2e-10 70.9 96 45.8
TPR.G34731 Trifolium pratense HOM05D000350 ORTHO05D000228 1.2e-10 70.9 90 44.4
FvH4_5g15150 Fragaria vesca HOM05D000350 ORTHO05D000228 1.6e-10 70.5 160 34.4
FAN08G1184 Fragaria x ananassa HOM05D000350 ORTHO05D000228 1.6e-10 70.5 160 34.4
FAN18G1488 Fragaria x ananassa HOM05D000350 ORTHO05D000228 1.6e-10 70.5 160 34.4
Gohir.A07G063900 Gossypium hirsutum HOM05D000350 ORTHO05D000228 1.6e-10 70.5 114 46.5
Nitab4.5_0000269g0060 Nicotiana tabacum HOM05D000350 ORTHO05D000228 1.6e-10 70.5 87 44.8
Phvul.003G190900 Phaseolus vulgaris HOM05D000350 ORTHO05D000228 1.6e-10 70.5 103 44.7
SalBow7G2673 Salvia bowleyana HOM05D000350 ORTHO05D000228 1.6e-10 70.5 90 41.1
Sed0023822 Sechium edule HOM05D000350 ORTHO05D000228 1.6e-10 70.5 88 46.6
TAR622G0441 Trochodendron aralioides HOM05D000350 ORTHO05D000228 1.6e-10 70.5 96 41.7
Ciclev10020275m.g Citrus clementina HOM05D000350 ORTHO05D000228 2.1e-10 70.1 95 46.3
Gohir.D13G073800 Gossypium hirsutum HOM05D000350 ORTHO05D000228 2.1e-10 70.1 145 38.6
Lsat_1_v5_gn_1_13200 Lactuca sativa HOM05D000350 ORTHO05D000228 2.1e-10 70.1 103 40.8
Nn3g17205 Nelumbo nucifera HOM05D000350 ORTHO05D000228 2.1e-10 70.1 98 41.8
FAN13G3314 Fragaria x ananassa HOM05D000350 ORTHO05D000228 2.7e-10 69.7 160 34.4
HanXRQChr08g0235581 Helianthus annuus HOM05D000350 ORTHO05D000228 2.7e-10 69.7 102 43.1
Cpa.g.sc9.44 Carica papaya HOM05D008870 ORTHO05D010906 3.5e-10 69.3 73 49.3
FAN04G0488 Fragaria x ananassa HOM05D000350 ORTHO05D000228 3.5e-10 69.3 160 34.4
Gohir.D07G068700 Gossypium hirsutum HOM05D000350 ORTHO05D000228 3.5e-10 69.3 114 45.6
Gorai.001G072200 Gossypium raimondii HOM05D000350 ORTHO05D000228 3.5e-10 69.3 114 45.6
Lalb_Chr12g0196841 Lupinus albus HOM05D000350 ORTHO05D000228 3.5e-10 69.3 103 40.8
Lalb_Chr13g0303291 Lupinus albus HOM05D000350 ORTHO05D000228 3.5e-10 69.3 93 46.2
Gorai.013G084500 Gossypium raimondii HOM05D000350 ORTHO05D000228 4.6e-10 68.9 101 44.6
Gorai.N023400 Gossypium raimondii HOM05D000350 ORTHO05D000228 4.6e-10 68.9 101 44.6
Lj9C462T10 Lonicera japonica HOM05D000350 ORTHO05D000228 4.6e-10 68.9 127 39.4
Nn4g23130 Nelumbo nucifera HOM05D000350 ORTHO05D000228 7.9e-10 68.2 106 36.8
Dinv34166 Davidia involucrata HOM05D000189 ORTHO05D000474 1.0e-09 67.8 113 42.5
Duzib248G0115 Durio zibethinus HOM05D000350 ORTHO05D000228 1.0e-09 67.8 102 46.1
Glyma.05G027400 Glycine max HOM05D000350 ORTHO05D000228 1.0e-09 67.8 86 46.5
Solyc03g116320.3 Solanum lycopersicum HOM05D000350 ORTHO05D000228 1.0e-09 67.8 122 35.2
PGSC0003DMG400000597 Solanum tuberosum HOM05D000350 ORTHO05D000228 1.0e-09 67.8 124 34.7
PGSC0003DMG400033078 Solanum tuberosum HOM05D000350 ORTHO05D000228 1.0e-09 67.8 86 44.2
Aqoxy3G03354 Aquilegia oxysepala HOM05D000350 ORTHO05D000228 1.3e-09 67.4 93 41.9
Ca_21828_v3 Cicer arietinum L. HOM05D000350 ORTHO05D000228 1.3e-09 67.4 94 41.5
Glyma.17G099100 Glycine max HOM05D000350 ORTHO05D000228 1.3e-09 67.4 141 39.0
Gohir.A13G073700 Gossypium hirsutum HOM05D000350 ORTHO05D000228 1.3e-09 67.4 101 43.6
Gohir.D13G073900 Gossypium hirsutum HOM05D000350 ORTHO05D000228 1.3e-09 67.4 101 43.6
RcHm_v2.0_Chr7g0181021 Rosa chinensis HOM05D000350 ORTHO05D000228 1.3e-09 67.4 159 34.6
Solyc06g070900.3 Solanum lycopersicum HOM05D000350 ORTHO05D000228 1.3e-09 67.4 97 40.2
Nitab4.5_0001188g0020 Nicotiana tabacum HOM05D000350 ORTHO05D000228 1.8e-09 67.0 87 43.7
Hma1.2p1_0735F.1_g210510 Hydrangea macrophylla HOM05D000350 ORTHO05D000228 2.3e-09 66.6 76 52.6
Lsat_1_v5_gn_4_107781 Lactuca sativa HOM05D000350 ORTHO05D000228 2.3e-09 66.6 133 34.6
VMungo1309G1886 Vigna mungo HOM05D000350 ORTHO05D000228 2.3e-09 66.6 94 41.5
MSTRG.9632 Avicennia marina HOM05D000350 ORTHO05D000228 3.0e-09 66.2 125 32.8
Cpa.g.sc309.3 Carica papaya HOM05D001083 ORTHO05D006562 3.0e-09 66.2 74 48.6
Manes.01G187000 Manihot esculenta HOM05D000350 ORTHO05D000228 3.0e-09 66.2 97 40.2
Oeu022203.1 Olea europaea HOM05D000350 ORTHO05D000228 3.0e-09 66.2 105 41.9
Phvul.009G188100 Phaseolus vulgaris HOM05D000350 ORTHO05D000228 3.0e-09 66.2 94 41.5
Sopen03g035250 Solanum pennellii HOM05D000350 ORTHO05D000228 3.0e-09 66.2 122 34.4
CiPaw.12G014100 Carya illinoinensis HOM05D000350 ORTHO05D000228 3.9e-09 65.9 103 44.7
Aqoxy3G00680 Aquilegia oxysepala HOM05D000350 ORTHO05D000228 5.1e-09 65.5 91 41.8
Oeu022623.1 Olea europaea HOM05D000350 ORTHO05D000228 5.1e-09 65.5 97 38.1
arahy.Tifrunner.gnm1.ann1.6V3SWS Arachis hypogaea HOM05D000350 ORTHO05D000228 6.7e-09 65.1 115 39.1
arahy.Tifrunner.gnm1.ann1.Q9YRAB Arachis hypogaea HOM05D000350 ORTHO05D000228 6.7e-09 65.1 115 39.1
PSO017G3276 Papaver somniferum HOM05D000350 ORTHO05D000228 8.7e-09 64.7 85 43.5
PSO478G4552 Papaver somniferum HOM05D000350 ORTHO05D000228 8.7e-09 64.7 85 43.5
Cpa.g.sc56.5 Carica papaya HOM05D008870 ORTHO05D010906 1.9e-08 63.5 72 48.6
ECA246G5143 Erigeron canadensis HOM05D000350 ORTHO05D000228 1.9e-08 63.5 87 40.2
HanXRQChr05g0158111 Helianthus annuus HOM05D000350 ORTHO05D000228 1.9e-08 63.5 78 47.4
HanXRQChr16g0502851 Helianthus annuus HOM05D000350 ORTHO05D000228 1.9e-08 63.5 138 33.3
Sopen06g027180 Solanum pennellii HOM05D000350 ORTHO05D000228 1.9e-08 63.5 86 43.0
Rhsim08G0156400 Rhododendron simsii HOM05D000350 ORTHO05D000228 2.5e-08 63.2 92 40.2
MSTRG.23022 Avicennia marina HOM05D000350 ORTHO05D000228 3.3e-08 62.8 152 31.6
Glyma.04G170600 Glycine max HOM05D000350 ORTHO05D000228 3.3e-08 62.8 113 38.9
Sed0003260 Sechium edule HOM05D000350 ORTHO05D000228 3.3e-08 62.8 118 40.7
Cpa.g.sc23.138 Carica papaya HOM05D000004 ORTHO05D000002 5.6e-08 62.0 52 55.8
Gohir.A13G073800 Gossypium hirsutum HOM05D000350 ORTHO05D000228 5.6e-08 62.0 141 36.2
Hma1.2p1_0104F.1_g050010 Hydrangea macrophylla HOM05D000350 ORTHO05D000228 7.4e-08 61.6 93 43.0
Lj1g0013982 Lotus japonicus HOM05D000350 ORTHO05D000228 9.6e-08 61.2 88 40.9
Cpa.g.sc65.114 Carica papaya HOM05D008870 ORTHO05D010906 1.3e-07 60.8 52 55.8
Oeu045408.1 Olea europaea HOM05D000350 ORTHO05D000228 1.3e-07 60.8 94 36.2
SGA_v2.0_scaffold7G04072 Striga asiatica HOM05D000350 ORTHO05D000228 1.6e-07 60.5 90 40.0
Cpa.g.sc40.12 Carica papaya HOM05D004670 ORTHO05D022223 2.1e-07 60.1 63 50.8
ClCG05G024370 Citrullus lanatus HOM05D000350 ORTHO05D000228 2.1e-07 60.1 112 38.4
PGR044G1024 Punica granatum HOM05D000350 ORTHO05D000228 2.1e-07 60.1 99 36.4
Cpa.g.sc8.320 Carica papaya HOM05D008870 ORTHO05D010906 2.8e-07 59.7 94 40.4
Dinv19949 Davidia involucrata HOM05D000350 ORTHO05D000228 2.8e-07 59.7 152 33.6
Migut.D01829 Erythranthe guttata HOM05D000350 ORTHO05D000228 2.8e-07 59.7 79 41.8
MSTRG.694 Avicennia marina HOM05D000350 ORTHO05D000228 4.8e-07 58.9 133 34.6
Migut.L01307 Erythranthe guttata HOM05D000350 ORTHO05D000228 4.8e-07 58.9 91 37.4
Cpa.g.sc12.244 Carica papaya HOM05D008870 ORTHO05D010906 6.2e-07 58.5 76 42.1
Dinv38694 Davidia involucrata HOM05D000018 ORTHO05D007339 6.2e-07 58.5 147 34.7
CANSAT80G2208 Cannabis sativa HOM05D000350 ORTHO05D000228 8.1e-07 58.2 97 42.3
Gorai.008G181600 Gossypium raimondii HOM05D000350 ORTHO05D000228 8.1e-07 58.2 102 42.2
Cpa.g.sc4.37 Carica papaya HOM05D008870 ORTHO05D010906 1.1e-06 57.8 87 42.5
MELO3C012086.2 Cucumis melo HOM05D000350 ORTHO05D000228 1.1e-06 57.8 109 38.5
DCAR_031027 Daucus carota HOM05D000350 ORTHO05D000228 1.1e-06 57.8 118 38.1
DCAR_031028 Daucus carota HOM05D000350 ORTHO05D000228 1.1e-06 57.8 118 38.1
Cpa.g.sc209.39 Carica papaya HOM05D004670 ORTHO05D022223 1.8e-06 57.0 63 47.6
Cpa.g.sc76.47 Carica papaya HOM05D008870 ORTHO05D010906 1.8e-06 57.0 59 47.5
Glyma.01G045500 Glycine max HOM05D000350 ORTHO05D000228 1.8e-06 57.0 106 39.6
MBI05_g35458_MAGBIO Magnolia biondii HOM05D000350 ORTHO05D000228 2.4e-06 56.6 96 35.4
Cpa.g.sc10.136 Carica papaya HOM05D008870 ORTHO05D010906 3.1e-06 56.2 57 52.6
TWI81G0836 Tripterygium wilfordii HOM05D000350 ORTHO05D000228 3.1e-06 56.2 89 40.4
Cpa.g.sc79.23 Carica papaya HOM05D008870 ORTHO05D010906 4.0e-06 55.8 90 36.7
Cpa.g.sc9.320 Carica papaya HOM05D008870 ORTHO05D010906 4.0e-06 55.8 92 38.0
Gohir.D12G168800 Gossypium hirsutum HOM05D000350 ORTHO05D000228 4.0e-06 55.8 102 41.2
Lj4g0017086 Lotus japonicus HOM05D000350 ORTHO05D000228 4.0e-06 55.8 94 40.4
Manes.05G100100 Manihot esculenta HOM05D000350 ORTHO05D000228 4.0e-06 55.8 104 36.5
Cpa.g.sc13.22 Carica papaya HOM05D000911 ORTHO05D010906 6.9e-06 55.1 57 50.9
Dinv16633 Davidia involucrata HOM05D000350 ORTHO05D000228 6.9e-06 55.1 86 37.2
Oeu054894.1 Olea europaea HOM05D000350 ORTHO05D000228 6.9e-06 55.1 93 33.3
CSS0029405 Camellia sinensis var. sinensis HOM05D000350 ORTHO05D000228 9.0e-06 54.7 110 35.5
Cpa.g.sc42.37 Carica papaya HOM05D008870 ORTHO05D010906 9.0e-06 54.7 53 54.7
SHI48738 Sapria himalayana HOM05D000004 ORTHO05D000002 9.0e-06 54.7 75 44.0


User provided reference genes

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