Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cpa.g.sc1009.2 Carica papaya HOM05D007092 ORTHO05D008947 2.4e-56 221.9 106 100.0
MD09G1158700 Malus domestica HOM05D007092 ORTHO05D008947 2.7e-23 112.1 103 59.2
Haze_15817 Corylus avellana HOM05D007092 ORTHO05D008947 3.0e-22 108.6 98 64.3
QL05p083231 Quercus lobata HOM05D007092 ORTHO05D008947 8.6e-22 107.1 96 58.3
GSVIVG01016136001 Vitis vinifera HOM05D007092 ORTHO05D008947 1.1e-21 106.7 96 59.4
Thhalv10018923m.g Eutrema salsugineum HOM05D007092 ORTHO05D008947 5.6e-21 104.4 70 71.4
PGR102G2093 Punica granatum HOM05D007092 ORTHO05D008947 5.6e-21 104.4 65 73.8
Manes.01G181400 Manihot esculenta HOM05D007092 ORTHO05D008947 9.5e-21 103.6 70 71.4
Sp5g28050 Schrenkiella parvula HOM05D007092 ORTHO05D008947 1.2e-20 103.2 104 52.9
Dinv37796 Davidia involucrata HOM05D007092 ORTHO05D008947 1.6e-20 102.8 103 60.2
Thecc.06G015800 Theobroma cacao HOM05D007092 ORTHO05D008947 3.6e-20 101.7 82 59.8
Carub.0002s1986 Capsella rubella HOM05D007092 ORTHO05D008947 4.7e-20 101.3 67 71.6
CSS0038887 Camellia sinensis var. sinensis HOM05D007092 ORTHO05D008947 8.1e-20 100.5 104 57.7
Atru.chr1.2779 Acer truncatum HOM05D007092 ORTHO05D008947 1.4e-19 99.8 106 50.0
Sc12g0010950 Simmondsia chinensis HOM05D007092 ORTHO05D008947 3.1e-19 98.6 65 69.2
Eucgr.F04011 Eucalyptus grandis HOM05D007092 ORTHO05D008947 5.2e-19 97.8 65 72.3
FAN02G1258 Fragaria x ananassa HOM05D007092 ORTHO05D008947 5.2e-19 97.8 65 73.8
FAN09G2007 Fragaria x ananassa HOM05D007092 ORTHO05D008947 5.2e-19 97.8 65 73.8
AL2G32840 Arabidopsis lyrata HOM05D007092 ORTHO05D008947 6.8e-19 97.4 67 70.1
COL.COLO4_22872 Corchorus olitorius HOM05D007092 ORTHO05D008947 6.8e-19 97.4 66 68.2
FvH4_6g37290 Fragaria vesca HOM05D007092 ORTHO05D008947 8.9e-19 97.1 67 71.6
TAR383G0306 Trochodendron aralioides HOM05D007092 ORTHO05D008947 1.2e-18 96.7 72 68.1
BolC2t09103H Brassica oleracea HOM05D007092 ORTHO05D008947 1.5e-18 96.3 67 68.7
Medtr4g006030 Medicago truncatula HOM05D007092 ORTHO05D008947 1.5e-18 96.3 55 76.4
RcHm_v2.0_Chr2g0150121 Rosa chinensis HOM05D007092 ORTHO05D008947 2.0e-18 95.9 55 80.0
AT1G73090 Arabidopsis thaliana HOM05D007092 ORTHO05D008947 3.4e-18 95.1 67 68.7
arahy.Tifrunner.gnm1.ann1.U4SUAB Arachis hypogaea HOM05D007092 ORTHO05D008947 3.4e-18 95.1 65 66.2
Glyma.07G003900 Glycine max HOM05D007092 ORTHO05D008947 3.4e-18 95.1 57 71.9
Hma1.2p1_1104F.1_g257360 Hydrangea macrophylla HOM05D007092 ORTHO05D008947 3.4e-18 95.1 101 53.5
Prupe.3G167100 Prunus persica HOM05D007092 ORTHO05D008947 3.4e-18 95.1 63 69.8
Nn2g12583 Nelumbo nucifera HOM05D007092 ORTHO05D008947 4.4e-18 94.7 62 74.2
Sopen06g022680 Solanum pennellii HOM05D007092 ORTHO05D008947 4.4e-18 94.7 64 70.3
arahy.Tifrunner.gnm1.ann1.2I6Q5Y Arachis hypogaea HOM05D007092 ORTHO05D008947 5.8e-18 94.4 65 66.2
CANSAT01G0482 Cannabis sativa HOM05D007092 ORTHO05D008947 5.8e-18 94.4 63 65.1
Lj3g0013116 Lotus japonicus HOM05D007092 ORTHO05D008947 5.8e-18 94.4 63 63.5
Nitab4.5_0008628g0030 Nicotiana tabacum HOM05D007092 ORTHO05D008947 7.5e-18 94.0 50 84.0
CARHR066060 Cardamine hirsuta HOM05D007092 ORTHO05D008947 1.3e-17 93.2 67 65.7
Ciclev10026125m.g Citrus clementina HOM05D007092 ORTHO05D008947 1.3e-17 93.2 81 60.5
Solyc06g063230.3 Solanum lycopersicum HOM05D007092 ORTHO05D008947 1.3e-17 93.2 51 82.4
A02p18440 Brassica napus HOM05D007092 ORTHO05D008947 1.7e-17 92.8 67 67.2
BraA02t06883Z Brassica rapa HOM05D007092 ORTHO05D008947 1.7e-17 92.8 67 67.2
AUR62001368 Chenopodium quinoa HOM05D007092 ORTHO05D008947 1.7e-17 92.8 101 53.5
PGSC0003DMG400026517 Solanum tuberosum HOM05D007092 ORTHO05D008947 1.7e-17 92.8 51 82.4
Aa31LG4G3360 Aethionema arabicum HOM05D007092 ORTHO05D008947 2.2e-17 92.4 54 74.1
AUR62025584 Chenopodium quinoa HOM05D007092 ORTHO05D008947 2.2e-17 92.4 97 51.5
Nitab4.5_0002661g0010 Nicotiana tabacum HOM05D007092 ORTHO05D008947 2.2e-17 92.4 48 83.3
C02p30520 Brassica napus HOM05D007092 ORTHO05D008947 2.9e-17 92.0 67 65.7
ClCG09G001510 Citrullus lanatus HOM05D007092 ORTHO05D008947 2.9e-17 92.0 72 63.9
Oeu049655.1 Olea europaea HOM05D007092 ORTHO05D008947 2.9e-17 92.0 68 66.2
TPR.G38753 Trifolium pratense HOM05D007092 ORTHO05D008947 2.9e-17 92.0 48 79.2
VMungo0647G0167 Vigna mungo HOM05D007092 ORTHO05D008947 3.7e-17 91.7 66 65.2
Phvul.008G255700 Phaseolus vulgaris HOM05D007092 ORTHO05D008947 6.4e-17 90.9 71 59.2
Actinidia21869 Actinidia chinensis HOM05D007092 ORTHO05D008947 1.1e-16 90.1 51 74.5
Lalb_Chr04g0264731 Lupinus albus HOM05D007092 ORTHO05D008947 1.9e-16 89.4 49 73.5
HanXRQChr10g0311491 Helianthus annuus HOM05D007092 ORTHO05D008947 5.4e-16 87.8 110 44.5
EL10Ac7g18225 Beta vulgaris HOM05D007092 ORTHO05D008947 7.1e-16 87.4 61 62.3
CsaV3_7G033820 Cucumis sativus L. HOM05D007092 ORTHO05D008947 7.1e-16 87.4 107 49.5
Cc04_g00380 Coffea canephora HOM05D007092 ORTHO05D008947 9.2e-16 87.0 51 70.6
CDE07G2035 Ceratophyllum demersum HOM05D007092 ORTHO05D008947 1.6e-15 86.3 49 69.4
Psat7g263560 Pisum sativum HOM05D007092 ORTHO05D008947 1.6e-15 86.3 55 67.3
Hund18612 Selenicereus undatus HOM05D007092 ORTHO05D008947 1.6e-15 86.3 87 52.9
Ca_20954_v3 Cicer arietinum L. HOM05D007092 ORTHO05D008947 4.6e-15 84.7 55 65.5
Lsat_1_v5_gn_5_137421 Lactuca sativa HOM05D007092 ORTHO05D008947 4.6e-15 84.7 69 58.0
ECA234G1665 Erigeron canadensis HOM05D007092 ORTHO05D008947 6.0e-15 84.3 82 47.6
MELO3C024294.2 Cucumis melo HOM05D007092 ORTHO05D008947 1.3e-14 83.2 105 49.5
Potri.010G250100 Populus trichocarpa HOM05D007092 ORTHO05D008947 1.3e-14 83.2 96 51.0
PSO063G1240 Papaver somniferum HOM05D007092 ORTHO05D008947 1.7e-14 82.8 61 62.3
HPP92_017449 Vanilla planifolia HOM05D007092 ORTHO05D008947 1.7e-14 82.8 49 69.4
Peaxi162Scf00207g01537 Petunia axillaris HOM05D007092 ORTHO05D008947 2.3e-14 82.4 46 78.3
Sabra10G0194500 Salix brachista HOM05D007092 ORTHO05D008947 2.3e-14 82.4 96 52.1
THA.LOC104823333 Tarenaya hassleriana HOM05D007092 ORTHO05D008947 3.9e-14 81.6 60 70.0
MBI14_g30703_MAGBIO Magnolia biondii HOM05D007092 ORTHO05D008947 5.1e-14 81.3 75 60.0
ATR0580G293 Amborella trichopoda HOM05D007092 ORTHO05D008947 1.1e-13 80.1 58 62.1
Aqoxy7G03199 Aquilegia oxysepala HOM05D007092 ORTHO05D008947 5.6e-13 77.8 65 60.0
RcHm_v2.0_Chr1g0381181 Rosa chinensis HOM05D007092 ORTHO05D008947 1.6e-12 76.3 70 57.1
unitig_748.g7475 Utricularia gibba HOM05D007092 ORTHO05D008947 1.6e-12 76.3 72 48.6
Lj6C21G9 Lonicera japonica HOM05D007092 ORTHO05D008947 2.1e-12 75.9 56 64.3
Lj6C3G1 Lonicera japonica HOM05D000076 ORTHO05D001279 2.1e-12 75.9 56 64.3
Duzib160G0445 Durio zibethinus HOM05D007092 ORTHO05D008947 2.8e-12 75.5 50 68.0
SGA_v2.0_scaffold122G33289 Striga asiatica HOM05D002895 ORTHO05D003286 3.6e-12 75.1 46 69.6
Migut.I01177 Erythranthe guttata HOM05D007092 ORTHO05D008947 2.3e-11 72.4 104 41.3
Actinidia21637 Actinidia chinensis HOM05D007092 ORTHO05D008947 7.6e-10 67.4 42 66.7
Gohir.D10G007300 Gossypium hirsutum HOM05D007092 ORTHO05D008947 9.9e-10 67.0 100 44.0
Gorai.011G008000 Gossypium raimondii HOM05D007092 ORTHO05D008947 9.9e-10 67.0 100 44.0
Gohir.A10G007400 Gossypium hirsutum HOM05D007092 ORTHO05D008947 1.3e-09 66.6 100 44.0
SalBow6G0042 Salvia bowleyana HOM05D007092 ORTHO05D008947 5.4e-08 61.2 48 56.2
TAR627G0568 Trochodendron aralioides HOM05D000264 ORTHO05D000152 4.6e-07 58.2 45 62.2
Sed0004999 Sechium edule HOM05D007092 ORTHO05D008947 7.8e-07 57.4 58 50.0
SEGI_02665 Sequoiadendron giganteum HOM05D007092 ORTHO05D050975 1.0e-06 57.0 65 44.6
SEGI_38624 Sequoiadendron giganteum HOM05D007092 ORTHO05D050975 1.0e-06 57.0 44 54.5


User provided reference genes

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