Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cpa.g.sc100.6 Carica papaya HOM05D000290 ORTHO05D026430 4.0e-131 471.5 244 100.0
Manes.12G141200 Manihot esculenta HOM05D000290 ORTHO05D002418 8.8e-54 214.5 239 54.0
Gohir.A02G133800 Gossypium hirsutum HOM05D000290 ORTHO05D002418 1.6e-50 203.8 246 54.1
Gorai.003G046300 Gossypium raimondii HOM05D000290 ORTHO05D002418 2.0e-50 203.4 247 53.4
Thecc.01G110800 Theobroma cacao HOM05D000290 ORTHO05D002418 2.0e-50 203.4 243 54.7
ClCG01G019260 Citrullus lanatus HOM05D000290 ORTHO05D002418 2.7e-50 203.0 244 51.6
MD01G1017900 Malus domestica HOM05D000290 ORTHO05D002418 7.7e-50 201.4 235 54.5
RcHm_v2.0_Chr2g0116161 Rosa chinensis HOM05D000290 ORTHO05D002418 1.0e-49 201.1 236 54.2
CiPaw.03G135100 Carya illinoinensis HOM05D000290 ORTHO05D002418 1.7e-49 200.3 237 55.3
Sed0011702 Sechium edule HOM05D000290 ORTHO05D002418 1.7e-49 200.3 237 52.7
Prupe.6G175300 Prunus persica HOM05D000290 ORTHO05D002418 8.5e-49 198.0 235 52.8
CiPaw.04G092900 Carya illinoinensis HOM05D000290 ORTHO05D002418 2.5e-48 196.4 233 54.1
Potri.007G082500 Populus trichocarpa HOM05D000290 ORTHO05D002418 5.5e-48 195.3 243 51.9
MELO3C007801.2 Cucumis melo HOM05D000290 ORTHO05D002418 9.4e-48 194.5 243 50.6
arahy.Tifrunner.gnm1.ann1.S3R8GT Arachis hypogaea HOM05D000290 ORTHO05D002418 1.6e-47 193.7 242 51.2
CsaV3_6G045940 Cucumis sativus L. HOM05D000290 ORTHO05D002418 1.6e-47 193.7 243 49.8
Sabra07G0069100 Salix brachista HOM05D000290 ORTHO05D002418 1.8e-46 190.3 240 52.1
arahy.Tifrunner.gnm1.ann1.T0HPDF Arachis hypogaea HOM05D000290 ORTHO05D002418 2.3e-46 189.9 241 50.2
GSVIVG01022210001 Vitis vinifera HOM05D000290 ORTHO05D002418 2.3e-46 189.9 235 49.8
Atru.chr4.398 Acer truncatum HOM05D000290 ORTHO05D002418 3.0e-46 189.5 235 50.6
Dinv19505 Davidia involucrata HOM05D000290 ORTHO05D002418 4.0e-46 189.1 236 49.6
Gohir.D03G045200 Gossypium hirsutum HOM05D000290 ORTHO05D002418 8.8e-46 188.0 241 50.2
CANSAT01G1322 Cannabis sativa HOM05D000290 ORTHO05D002418 1.5e-45 187.2 237 50.6
TWI74G1368 Tripterygium wilfordii HOM05D000290 ORTHO05D002418 1.5e-45 187.2 241 51.5
QL06p032420 Quercus lobata HOM05D000290 ORTHO05D002418 5.7e-45 185.3 240 51.7
Haze_25028 Corylus avellana HOM05D000290 ORTHO05D002418 9.8e-45 184.5 234 50.4
CSS0019128 Camellia sinensis var. sinensis HOM05D000290 ORTHO05D002418 2.2e-44 183.3 232 49.1
Sabra05G0068300 Salix brachista HOM05D000290 ORTHO05D002418 3.7e-44 182.6 251 48.2
Duzib147G0442 Durio zibethinus HOM05D000290 ORTHO05D002418 1.4e-43 180.6 249 49.0
THA.LOC104799212 Tarenaya hassleriana HOM05D000290 ORTHO05D002418 1.4e-43 180.6 235 48.9
TWI77G0161 Tripterygium wilfordii HOM05D000290 ORTHO05D002418 1.4e-43 180.6 235 48.9
Glyma.08G140900 Glycine max HOM05D000290 ORTHO05D002418 2.4e-43 179.9 235 50.2
Ciclev10024947m.g Citrus clementina HOM05D000290 ORTHO05D002418 4.1e-43 179.1 238 47.9
Glyma.06G145700 Glycine max HOM05D000290 ORTHO05D002418 2.7e-42 176.4 237 49.4
Lalb_Chr13g0296171 Lupinus albus HOM05D000290 ORTHO05D002418 2.7e-42 176.4 236 49.2
MD15G1334400 Malus domestica HOM05D000290 ORTHO05D002418 1.0e-41 174.5 235 51.1
Ca_17701_v3 Cicer arietinum L. HOM05D000290 ORTHO05D002418 2.3e-41 173.3 237 47.7
Potri.005G083200 Populus trichocarpa HOM05D000290 ORTHO05D002418 1.5e-40 170.6 245 44.9
Actinidia33364 Actinidia chinensis HOM05D000290 ORTHO05D002418 4.2e-40 169.1 238 48.3
FvH4_1g22080 Fragaria vesca HOM05D000290 ORTHO05D002418 4.2e-40 169.1 250 45.6
FAN19G1951 Fragaria x ananassa HOM05D000290 ORTHO05D002418 5.5e-40 168.7 236 47.5
Glyma.04G220200 Glycine max HOM05D000290 ORTHO05D002418 1.4e-38 164.1 239 48.1
FAN26G1302 Fragaria x ananassa HOM05D000290 ORTHO05D002418 1.8e-38 163.7 213 48.8
Aa31LG1G17030 Aethionema arabicum HOM05D000290 ORTHO05D002418 8.9e-38 161.4 232 43.1
Phvul.002G264200 Phaseolus vulgaris HOM05D000290 ORTHO05D002418 8.9e-38 161.4 241 48.5
Lalb_Chr12g0203571 Lupinus albus HOM05D000290 ORTHO05D002418 2.0e-37 160.2 237 45.6
Phvul.009G140366 Phaseolus vulgaris HOM05D000290 ORTHO05D002418 2.6e-37 159.8 237 46.8
Dinv42708 Davidia involucrata HOM05D000290 ORTHO05D002418 7.5e-37 158.3 199 46.7
FAN28G0415 Fragaria x ananassa HOM05D000290 ORTHO05D002418 7.5e-37 158.3 197 50.8
VMungo0251G3264 Vigna mungo HOM05D000290 ORTHO05D002418 1.3e-36 157.5 240 46.7
FAN23G0918 Fragaria x ananassa HOM05D000290 ORTHO05D002418 4.9e-36 155.6 198 51.0
Lj4g0021892 Lotus japonicus HOM05D000290 ORTHO05D002418 2.0e-34 150.2 237 43.9
SalBow6G4085 Salvia bowleyana HOM05D000290 ORTHO05D002418 2.0e-34 150.2 237 45.1
TAR628G0248 Trochodendron aralioides HOM05D000290 ORTHO05D002418 2.7e-34 149.8 246 42.3
Medtr3g094740 Medicago truncatula HOM05D000290 ORTHO05D002418 4.5e-34 149.1 233 45.5
Nitab4.5_0004814g0010 Nicotiana tabacum HOM05D000290 ORTHO05D002418 2.3e-33 146.7 244 43.9
Nitab4.5_0000156g0150 Nicotiana tabacum HOM05D000290 ORTHO05D002418 5.0e-33 145.6 244 45.1
CDE05G1393 Ceratophyllum demersum HOM05D001902 ORTHO05D002418 6.6e-33 145.2 241 43.6
vmacro18626 Vaccinium macrocarpon HOM05D000290 ORTHO05D002418 6.6e-33 145.2 291 39.2
Eucgr.H04831 Eucalyptus grandis HOM05D000290 ORTHO05D002418 1.1e-32 144.4 208 47.6
CDE05G2915 Ceratophyllum demersum HOM05D000290 ORTHO05D002418 1.5e-32 144.1 240 41.2
Sopen04g023660 Solanum pennellii HOM05D000290 ORTHO05D002418 4.3e-32 142.5 238 41.2
SGA_v2.0_scaffold47G17723 Striga asiatica HOM05D000290 ORTHO05D002418 7.3e-32 141.7 232 41.8
ATR0564G333 Amborella trichopoda HOM05D000290 ORTHO05D002418 1.6e-31 140.6 234 38.5
PGR004G2785 Punica granatum HOM05D000290 ORTHO05D002418 1.6e-31 140.6 235 43.0
Psat5g067200 Pisum sativum HOM05D000290 ORTHO05D002418 3.6e-31 139.4 233 45.1
MSTRG.3805 Avicennia marina HOM05D000290 ORTHO05D002418 1.0e-30 137.9 239 43.5
Hund03547 Selenicereus undatus HOM05D000290 ORTHO05D002418 2.3e-30 136.7 115 64.3
Solyc04g054190.3 Solanum lycopersicum HOM05D000290 ORTHO05D002418 2.3e-30 136.7 238 39.9
Nn5g28931 Nelumbo nucifera HOM05D000290 ORTHO05D002418 3.1e-30 136.3 235 40.0
Medtr8g091710 Medicago truncatula HOM05D000290 ORTHO05D002418 6.8e-30 135.2 236 41.5
unitig_0.g1736 Utricularia gibba HOM05D000290 ORTHO05D002418 2.0e-29 133.7 242 42.1
Migut.H02416 Erythranthe guttata HOM05D000290 ORTHO05D002418 2.6e-29 133.3 193 45.1
CAN.G267.22 Capsicum annuum HOM05D000290 ORTHO05D002418 4.4e-29 132.5 244 40.6
Ca_16887_v3 Cicer arietinum L. HOM05D000290 ORTHO05D002418 5.8e-29 132.1 233 41.2
Cc07_g16030 Coffea canephora HOM05D000290 ORTHO05D002418 5.8e-29 132.1 241 39.8
Glyma.05G183100 Glycine max HOM05D000290 ORTHO05D002418 9.8e-29 131.3 235 40.4
Lj1g0021046 Lotus japonicus HOM05D000290 ORTHO05D002418 1.3e-28 131.0 235 39.1
HPP92_027145 Vanilla planifolia HOM05D000290 ORTHO05D002418 2.2e-28 130.2 118 61.0
HanXRQChr14g0446221 Helianthus annuus HOM05D000290 ORTHO05D002418 2.9e-28 129.8 238 41.6
Hma1.2p1_0070F.1_g037540 Hydrangea macrophylla HOM05D000290 ORTHO05D002418 4.9e-28 129.0 119 60.5
Thhalv10003690m.g Eutrema salsugineum HOM05D000290 ORTHO05D002418 6.4e-28 128.6 243 39.1
CARHR293830 Cardamine hirsuta HOM05D000290 ORTHO05D002418 3.2e-27 126.3 235 38.3
ECA238G4461 Erigeron canadensis HOM05D000290 ORTHO05D002418 3.2e-27 126.3 151 47.7
Actinidia28888 Actinidia chinensis HOM05D000290 ORTHO05D026430 9.2e-27 124.8 92 69.6
DCAR_011445 Daucus carota HOM05D000290 ORTHO05D002418 9.2e-27 124.8 141 50.4
Sp2g28020 Schrenkiella parvula HOM05D000290 ORTHO05D002418 9.2e-27 124.8 238 37.8
Lsat_1_v5_gn_2_67600 Lactuca sativa HOM05D000290 ORTHO05D002418 1.2e-26 124.4 215 40.5
EL10Ac6g14732 Beta vulgaris HOM05D000290 ORTHO05D002418 1.6e-26 124.0 239 38.9
PSO675G7818 Papaver somniferum HOM05D000290 ORTHO05D002418 1.6e-26 124.0 236 37.3
Zm00001eb244840 Zea mays HOM05D000290 ORTHO05D002418 4.6e-26 122.5 235 39.6
Peaxi162Scf01006g00026 Petunia axillaris HOM05D000290 ORTHO05D002418 2.3e-25 120.2 245 40.8
Carub.0008s2577 Capsella rubella HOM05D000290 ORTHO05D002418 3.0e-25 119.8 249 36.9
Sc16g0004190 Simmondsia chinensis HOM05D000290 ORTHO05D002418 3.9e-25 119.4 225 38.7
A06p31730 Brassica napus HOM05D000290 ORTHO05D002418 8.6e-25 118.2 229 38.4
SalBow5G0667 Salvia bowleyana HOM05D000290 ORTHO05D002418 2.5e-24 116.7 240 36.7
BcaC01g02725 Brassica carinata HOM05D000290 ORTHO05D002418 7.3e-24 115.2 83 63.9
C03p61250 Brassica napus HOM05D000290 ORTHO05D002418 1.2e-23 114.4 80 66.2
BolC3t18386H Brassica oleracea HOM05D000290 ORTHO05D002418 1.2e-23 114.4 80 66.2
BcaB02g09843 Brassica carinata HOM05D000290 ORTHO05D002418 2.1e-23 113.6 83 60.2
AL8G42440 Arabidopsis lyrata HOM05D000290 ORTHO05D002418 2.8e-23 113.2 235 37.4
BraA06t26106Z Brassica rapa HOM05D000290 ORTHO05D002418 2.8e-23 113.2 80 67.5
HanXRQChr15g0471941 Helianthus annuus HOM05D000290 ORTHO05D002418 3.6e-23 112.8 228 36.0
AUR62003319 Chenopodium quinoa HOM05D000290 ORTHO05D002418 4.7e-23 112.5 113 54.0
Os02g0575500 Oryza sativa ssp. japonica HOM05D000290 ORTHO05D002418 6.2e-23 112.1 79 64.6
AUR62016263 Chenopodium quinoa HOM05D000290 ORTHO05D002418 1.1e-22 111.3 96 56.2
AT5G64940 Arabidopsis thaliana HOM05D000290 ORTHO05D002418 6.8e-22 108.6 238 34.0
Mapoly0001s0423 Marchantia polymorpha HOM05D000290 ORTHO05D002418 3.7e-20 102.8 73 63.0
Aqoxy6G00498 Aquilegia oxysepala HOM05D000290 ORTHO05D002418 1.1e-19 101.3 247 32.8
TPR.G2223 Trifolium pratense HOM05D000290 ORTHO05D002418 1.4e-19 100.9 70 68.6
AagrBONN_evm.TU.Sc2ySwM_344.1524 Anthoceros agrestis HOM05D000290 ORTHO05D002418 7.0e-19 98.6 76 57.9
Lj2A562G40 Lonicera japonica HOM05D000290 ORTHO05D002418 4.6e-18 95.9 49 83.7
CBR_g4041 Chara braunii HOM05D000290 ORTHO05D002418 1.3e-17 94.4 76 56.6
Pp3c15_3930 Physcomitrium patens HOM05D000290 ORTHO05D002418 1.7e-17 94.0 76 55.3
Pp3c9_4350 Physcomitrium patens HOM05D000290 ORTHO05D002418 6.6e-17 92.0 139 40.3
HPP92_016464 Vanilla planifolia HOM05D000290 ORTHO05D002418 1.9e-16 90.5 48 81.2
Phvul.002G315800 Phaseolus vulgaris HOM05D000290 ORTHO05D026430 9.5e-16 88.2 62 67.7
SEGI_08671 Sequoiadendron giganteum HOM05D000290 ORTHO05D026430 4.4e-13 79.3 45 68.9
Dinv16997 Davidia involucrata HOM05D015424 ORTHO05D019070 5.8e-13 79.0 115 43.5
Dinv42946 Davidia involucrata HOM05D015424 ORTHO05D019070 5.8e-13 79.0 115 43.5
Dinv43154 Davidia involucrata HOM05D015424 ORTHO05D019070 5.8e-13 79.0 115 43.5
SMO361G0768 Selaginella moellendorffii HOM05D000290 ORTHO05D002418 6.4e-12 75.5 49 61.2
Haze_00405 Corylus avellana HOM05D015424 ORTHO05D019070 4.1e-11 72.8 119 44.5
Haze_20641 Corylus avellana HOM05D015424 ORTHO05D019070 5.4e-11 72.4 81 56.8
Haze_10791 Corylus avellana HOM05D015424 ORTHO05D019070 9.2e-11 71.6 122 42.6
Oeu041166.1 Olea europaea HOM05D015424 ORTHO05D019070 6.6e-09 65.5 162 35.2
Rhsim08G0007800 Rhododendron simsii HOM05D000290 ORTHO05D002418 4.3e-08 62.8 182 36.3
SalBow6G0294 Salvia bowleyana HOM05D000290 ORTHO05D002418 6.2e-07 58.9 176 30.1
Oeu028382.3 Olea europaea HOM05D000290 ORTHO05D002418 8.1e-07 58.5 191 33.0
Cre13.g570350 Chlamydomonas reinhardtii HOM05D000290 ORTHO05D002418 4.0e-06 56.2 40 60.0


User provided reference genes

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