Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cpa.g.sc10.270 Carica papaya HOM05D005464 ORTHO05D006803 7.3e-209 730.3 374 100.0
Cfa001959 Carpinus fangiana HOM05D005464 ORTHO05D006803 1.7e-128 463.4 355 68.2
Manes.11G057000 Manihot esculenta HOM05D005464 ORTHO05D006803 2.4e-127 459.5 357 68.1
Prupe.3G087600 Prunus persica HOM05D005464 ORTHO05D006803 2.4e-127 459.5 378 65.3
MD17G1212300 Malus domestica HOM05D005464 ORTHO05D006803 1.6e-126 456.8 381 64.0
RcHm_v2.0_Chr2g0135251 Rosa chinensis HOM05D005464 ORTHO05D006803 2.0e-126 456.4 373 64.6
COL.COLO4_11947 Corchorus olitorius HOM05D005464 ORTHO05D006803 2.9e-125 452.6 356 66.9
CANSAT56G0380 Cannabis sativa HOM05D005464 ORTHO05D006803 3.8e-125 452.2 369 64.5
Haze_16562 Corylus avellana HOM05D005464 ORTHO05D006803 6.6e-125 451.4 366 65.0
Eucgr.J03066 Eucalyptus grandis HOM05D005464 ORTHO05D006803 8.6e-125 451.1 357 66.9
FAN05G5161 Fragaria x ananassa HOM05D005464 ORTHO05D006803 2.5e-124 449.5 384 62.8
TWI12G0099 Tripterygium wilfordii HOM05D005464 ORTHO05D006803 3.3e-124 449.1 383 64.5
FvH4_6g29660 Fragaria vesca HOM05D005464 ORTHO05D006803 1.6e-123 446.8 365 64.1
PGR031G2541 Punica granatum HOM05D005464 ORTHO05D006803 2.1e-123 446.4 377 63.1
Atru.chr1.2934 Acer truncatum HOM05D005464 ORTHO05D006803 1.0e-122 444.1 370 63.8
Actinidia15983 Actinidia chinensis HOM05D005464 ORTHO05D006803 2.3e-122 443.0 357 63.3
FAN09G2673 Fragaria x ananassa HOM05D005464 ORTHO05D006803 7.5e-121 438.0 375 62.1
CiPaw.02G157400 Carya illinoinensis HOM05D005464 ORTHO05D006803 2.9e-120 436.0 336 69.3
Nn8g39510 Nelumbo nucifera HOM05D005464 ORTHO05D006803 3.7e-120 435.6 353 62.6
Gohir.A05G123300 Gossypium hirsutum HOM05D005464 ORTHO05D006803 4.1e-119 432.2 373 61.9
Lsat_1_v5_gn_4_89921 Lactuca sativa HOM05D005464 ORTHO05D006803 4.1e-119 432.2 355 61.4
Sed0012798 Sechium edule HOM05D005464 ORTHO05D006803 9.2e-119 431.0 362 64.1
Gorai.009G128200 Gossypium raimondii HOM05D005464 ORTHO05D006803 1.6e-118 430.3 373 61.7
Lj3g0027830 Lotus japonicus HOM05D005464 ORTHO05D006803 2.7e-118 429.5 363 62.0
Psat5g302720 Pisum sativum HOM05D005464 ORTHO05D006803 3.5e-118 429.1 367 59.9
Thecc.06G025100 Theobroma cacao HOM05D000467 ORTHO05D000379 4.6e-118 428.7 370 61.1
GSVIVG01017342001 Vitis vinifera HOM05D005464 ORTHO05D006803 4.6e-118 428.7 371 61.5
DCAR_021346 Daucus carota HOM05D005464 ORTHO05D006803 7.8e-118 427.9 374 61.5
FAN14G5059 Fragaria x ananassa HOM05D005464 ORTHO05D006803 7.8e-118 427.9 410 57.1
THA.LOC104812511 Tarenaya hassleriana HOM05D005464 ORTHO05D006803 7.8e-118 427.9 372 63.4
TPR.G37199 Trifolium pratense HOM05D005464 ORTHO05D006803 1.1e-116 424.1 379 58.8
HanXRQChr16g0500301 Helianthus annuus HOM05D005464 ORTHO05D006803 2.5e-116 422.9 352 60.2
Migut.I00762 Erythranthe guttata HOM05D005464 ORTHO05D006803 5.6e-116 421.8 366 59.6
Medtr2g103910 Medicago truncatula HOM05D005464 ORTHO05D006803 7.3e-116 421.4 362 59.7
Phvul.005G178300 Phaseolus vulgaris HOM05D005464 ORTHO05D006803 9.5e-116 421.0 363 61.2
Ca_01055_v3 Cicer arietinum L. HOM05D005464 ORTHO05D006803 4.7e-115 418.7 363 60.3
Glyma.15G007300 Glycine max HOM05D005464 ORTHO05D006803 6.2e-115 418.3 383 59.0
Rhsim12G0191100 Rhododendron simsii HOM05D005464 ORTHO05D006803 6.2e-115 418.3 359 60.7
VMungo1080G0510 Vigna mungo HOM05D005464 ORTHO05D006803 6.2e-115 418.3 362 59.9
AT1G15330 Arabidopsis thaliana HOM05D005464 ORTHO05D006803 8.0e-115 417.9 367 61.0
Carub.0001s1508 Capsella rubella HOM05D005464 ORTHO05D006803 8.0e-115 417.9 351 63.0
ECA232G3027 Erigeron canadensis HOM05D005464 ORTHO05D006803 1.1e-114 417.5 364 59.3
Glyma.13G365800 Glycine max HOM05D005464 ORTHO05D006803 1.4e-114 417.2 369 60.2
Gohir.D05G124200 Gossypium hirsutum HOM05D005464 ORTHO05D006803 1.4e-114 417.2 373 61.1
Lalb_Chr14g0373811 Lupinus albus HOM05D005464 ORTHO05D006803 1.4e-114 417.2 381 58.5
Eucgr.F03878 Eucalyptus grandis HOM05D005464 ORTHO05D006803 1.8e-114 416.8 381 59.8
PSO017G6540 Papaver somniferum HOM05D005464 ORTHO05D006803 5.2e-114 415.2 368 59.0
BcaC05g25470 Brassica carinata HOM05D005464 ORTHO05D006803 6.8e-114 414.8 367 61.6
AL1G27420 Arabidopsis lyrata HOM05D005464 ORTHO05D006803 1.2e-113 414.1 367 61.3
Sp1g13650 Schrenkiella parvula HOM05D005464 ORTHO05D006803 1.5e-113 413.7 368 60.3
Aqoxy7G02293 Aquilegia oxysepala HOM05D005464 ORTHO05D006803 3.4e-113 412.5 355 59.4
PSO170G0224 Papaver somniferum HOM05D005464 ORTHO05D006803 3.4e-113 412.5 370 57.8
BolC5t30083H Brassica oleracea HOM05D005464 ORTHO05D006803 6.4e-112 408.3 368 60.1
C05p13460 Brassica napus HOM05D005464 ORTHO05D006803 8.3e-112 407.9 368 60.1
ClCG07G012450 Citrullus lanatus HOM05D005464 ORTHO05D006803 1.4e-111 407.1 358 62.8
A06p11340 Brassica napus HOM05D005464 ORTHO05D006803 1.9e-111 406.8 368 59.2
CsaV3_4G001710 Cucumis sativus L. HOM05D005464 ORTHO05D006803 3.2e-111 406.0 359 60.4
MSTRG.22747 Avicennia marina HOM05D005464 ORTHO05D006803 4.1e-111 405.6 352 59.9
BraA06t24313Z Brassica rapa HOM05D005464 ORTHO05D006803 4.1e-111 405.6 368 59.0
THA.LOC104812509 Tarenaya hassleriana HOM05D005464 ORTHO05D006803 1.2e-110 404.1 363 61.2
SGA_v2.0_scaffold5G02698 Striga asiatica HOM05D005464 ORTHO05D006803 6.0e-110 401.7 367 57.5
CARHR015860 Cardamine hirsuta HOM05D005464 ORTHO05D006803 7.8e-110 401.4 368 59.0
Lalb_Chr22g0350841 Lupinus albus HOM05D005464 ORTHO05D006803 1.7e-109 400.2 370 57.0
PGR102G0885 Punica granatum HOM05D005464 ORTHO05D006803 2.3e-109 399.8 364 58.2
PGSC0003DMG400028509 Solanum tuberosum HOM05D005464 ORTHO05D006803 3.9e-109 399.1 347 60.8
Thhalv10008048m.g Eutrema salsugineum HOM05D005464 ORTHO05D006803 5.1e-109 398.7 368 59.5
MBI14_g16402_MAGBIO Magnolia biondii HOM05D005464 ORTHO05D006803 5.1e-109 398.7 360 60.3
MELO3C017863.2 Cucumis melo HOM05D005464 ORTHO05D006803 1.1e-108 397.5 359 60.2
Nitab4.5_0006769g0010 Nicotiana tabacum HOM05D005464 ORTHO05D006803 1.1e-108 397.5 353 60.3
Solyc06g068160.3 Solanum lycopersicum HOM05D005464 ORTHO05D006803 1.2e-107 394.0 350 60.6
Aa31LG7G100 Aethionema arabicum HOM05D005464 ORTHO05D006803 1.6e-107 393.7 370 58.9
Hund06557 Selenicereus undatus HOM05D005464 ORTHO05D006803 2.8e-107 392.9 356 57.6
Sopen06g025430 Solanum pennellii HOM05D005464 ORTHO05D006803 2.8e-107 392.9 350 60.3
AT1G80090 Arabidopsis thaliana HOM05D005464 ORTHO05D006803 2.3e-106 389.8 350 58.6
AUR62016335 Chenopodium quinoa HOM05D005464 ORTHO05D006803 2.3e-106 389.8 366 56.8
Nitab4.5_0000373g0080 Nicotiana tabacum HOM05D005464 ORTHO05D006803 3.1e-106 389.4 353 59.5
vmacro16896 Vaccinium macrocarpon HOM05D005464 ORTHO05D006803 4.0e-106 389.0 388 53.9
CAN.G1503.8 Capsicum annuum HOM05D005464 ORTHO05D006803 8.9e-106 387.9 353 59.5
Dinv30606 Davidia involucrata HOM05D005464 ORTHO05D006803 8.9e-106 387.9 363 58.1
EL10Ac9g21898 Beta vulgaris HOM05D005464 ORTHO05D006803 2.6e-105 386.3 361 56.8
SHI11227 Sapria himalayana HOM05D005464 ORTHO05D006803 7.5e-105 384.8 363 58.1
Peaxi162Scf00207g00638 Petunia axillaris HOM05D005464 ORTHO05D006803 3.7e-104 382.5 353 59.2
BcaC08g47570 Brassica carinata HOM05D005464 ORTHO05D006803 2.1e-102 376.7 360 57.5
C06p54250 Brassica napus HOM05D005464 ORTHO05D006803 2.1e-102 376.7 360 57.5
BolC6t40438H Brassica oleracea HOM05D005464 ORTHO05D006803 2.1e-102 376.7 360 57.5
BcaB02g08721 Brassica carinata HOM05D005464 ORTHO05D006803 3.9e-101 372.5 359 56.8
unitig_0.g1114 Utricularia gibba HOM05D005464 ORTHO05D006803 3.9e-101 372.5 366 54.4
A07p45420 Brassica napus HOM05D005464 ORTHO05D006803 3.3e-100 369.4 360 55.8
AUR62011516 Chenopodium quinoa HOM05D005464 ORTHO05D006803 4.3e-100 369.0 331 58.9
Thhalv10019455m.g Eutrema salsugineum HOM05D005464 ORTHO05D006803 7.3e-100 368.2 355 56.1
Os02g0158900 Oryza sativa ssp. japonica HOM05D005464 ORTHO05D006803 1.8e-98 363.6 357 55.2
CARHR074410 Cardamine hirsuta HOM05D005464 ORTHO05D006803 6.8e-98 361.7 320 59.1
Sp5g35710 Schrenkiella parvula HOM05D005464 ORTHO05D006803 4.4e-97 359.0 320 58.1
Zm00001eb232620 Zea mays HOM05D005464 ORTHO05D006803 5.8e-97 358.6 383 51.7
ATR0800G035 Amborella trichopoda HOM05D005464 ORTHO05D006803 2.2e-96 356.7 361 52.6
arahy.Tifrunner.gnm1.ann1.JVJR89 Arachis hypogaea HOM05D005464 ORTHO05D006803 6.4e-96 355.1 384 53.1
arahy.Tifrunner.gnm1.ann1.Y6ZEHB Arachis hypogaea HOM05D005464 ORTHO05D006803 6.4e-96 355.1 384 53.1
Duzib160G0683 Durio zibethinus HOM05D005464 ORTHO05D006803 2.4e-95 353.2 303 61.4
HPP92_016981 Vanilla planifolia HOM05D005464 ORTHO05D006803 3.2e-95 352.8 355 54.1
BraA07t32046Z Brassica rapa HOM05D005464 ORTHO05D006803 5.3e-90 335.5 360 53.1
Ciclev10026304m.g Citrus clementina HOM05D005464 ORTHO05D006803 6.4e-88 328.6 261 69.7
Mapoly0007s0086 Marchantia polymorpha HOM05D005464 ORTHO05D006803 5.1e-85 318.9 341 49.9
Carub.0002s2743 Capsella rubella HOM05D005464 ORTHO05D006803 2.5e-84 316.6 297 56.6
SMO201G0050 Selaginella moellendorffii HOM05D005464 ORTHO05D006803 1.4e-79 300.8 365 47.1
Aa31LG4G370 Aethionema arabicum HOM05D005464 ORTHO05D006803 1.1e-76 291.2 297 52.2
Pp3c3_23830 Physcomitrium patens HOM05D005464 ORTHO05D006803 5.5e-71 272.3 341 44.3
QL05p029765 Quercus lobata HOM05D005464 ORTHO05D006803 2.5e-68 263.5 223 62.3
QL05p030112 Quercus lobata HOM05D005464 ORTHO05D006803 2.5e-68 263.5 223 62.3
Nn2g12091 Nelumbo nucifera HOM05D000467 ORTHO05D000379 1.8e-66 257.3 232 58.2
Oeu045134.1 Olea europaea HOM05D005464 ORTHO05D006803 4.0e-66 256.1 249 53.8
Lj9P500T36 Lonicera japonica HOM05D005464 ORTHO05D006803 5.7e-60 235.7 221 56.6
AagrBONN_evm.TU.Sc2ySwM_368.1642 Anthoceros agrestis HOM05D005464 ORTHO05D006803 1.4e-58 231.1 361 37.4
Atru.chr1.2936 Acer truncatum HOM05D005464 ORTHO05D006803 5.9e-57 225.7 225 55.6
PGR102G1999 Punica granatum HOM05D005464 ORTHO05D006803 5.9e-57 225.7 295 45.1
AagrBONN_evm.TU.Sc2ySwM_344.2189 Anthoceros agrestis HOM05D005464 ORTHO05D006803 5.0e-48 196.1 209 49.3
Sc06g0005900 Simmondsia chinensis HOM05D005464 ORTHO05D006803 1.4e-47 194.5 134 73.1
Sc06g0005910 Simmondsia chinensis HOM05D005464 ORTHO05D006803 1.4e-47 194.5 213 46.9
TAR383G0924 Trochodendron aralioides HOM05D005464 ORTHO05D006803 4.7e-46 189.5 127 77.2
CSS0011845 Camellia sinensis var. sinensis HOM05D005464 ORTHO05D006803 6.7e-45 185.7 133 72.2
CSS0036664 Camellia sinensis var. sinensis HOM05D005464 ORTHO05D006803 2.0e-44 184.1 133 71.4
Hma1.2p1_1144F.1_g261310 Hydrangea macrophylla HOM05D005464 ORTHO05D006803 2.6e-44 183.7 227 49.3
Cc04_g04410 Coffea canephora HOM05D005464 ORTHO05D006803 3.3e-44 183.3 283 41.3
HPP92_010901 Vanilla planifolia HOM05D005464 ORTHO05D006803 2.2e-43 180.6 223 44.4
VMungo1127G1748 Vigna mungo HOM05D005464 ORTHO05D006803 1.8e-42 177.6 199 47.7
CBR_g24374 Chara braunii HOM05D005464 ORTHO05D006803 1.2e-41 174.9 505 27.3
BcaC05g25495 Brassica carinata HOM05D005464 ORTHO05D006803 7.7e-41 172.2 176 51.7
AL2G41450 Arabidopsis lyrata HOM05D005464 ORTHO05D006803 2.4e-34 150.6 134 59.7
Pp3c13_16980 Physcomitrium patens HOM05D005464 ORTHO05D006803 2.4e-34 150.6 232 39.7
Psat1g035880 Pisum sativum HOM05D005464 ORTHO05D006803 1.4e-29 134.8 106 67.0
TAR383G0332 Trochodendron aralioides HOM05D005464 ORTHO05D006803 5.7e-28 129.4 116 56.0
SEGI_27934 Sequoiadendron giganteum HOM05D005464 ORTHO05D006803 2.2e-27 127.5 279 31.2
AL2G41440 Arabidopsis lyrata HOM05D005464 ORTHO05D006803 6.3e-27 125.9 129 51.9
Psat6g000160 Pisum sativum HOM05D005464 ORTHO05D006803 7.7e-25 119.0 134 48.5
QL05p030118 Quercus lobata HOM05D005464 ORTHO05D006803 4.0e-21 106.7 123 53.7
QL05p029759 Quercus lobata HOM05D005464 ORTHO05D006803 6.8e-21 105.9 139 49.6
CBR_g38673 Chara braunii HOM05D005464 ORTHO05D006803 8.0e-14 82.4 248 29.0
SEGI_39315 Sequoiadendron giganteum HOM05D005464 ORTHO05D006803 5.2e-13 79.7 118 42.4
Nn1g00750 Nelumbo nucifera HOM05D005464 ORTHO05D006803 5.4e-10 69.7 91 46.2
CDE05G1334 Ceratophyllum demersum HOM05D001741 ORTHO05D002196 1.1e-07 62.0 355 23.7
PGR044G0132 Punica granatum HOM05D001741 ORTHO05D002196 1.5e-07 61.6 365 23.0
Aqoxy5G03395 Aquilegia oxysepala HOM05D001741 ORTHO05D002196 2.5e-07 60.8 125 32.8
Aqoxy7G00969 Aquilegia oxysepala HOM05D001741 ORTHO05D002196 2.5e-07 60.8 125 32.8
Rhsim08G0189400 Rhododendron simsii HOM05D001741 ORTHO05D002196 2.5e-07 60.8 349 22.9
FvH4_4g31760 Fragaria vesca HOM05D001741 ORTHO05D002196 3.3e-07 60.5 98 32.7
FAN12G1673 Fragaria x ananassa HOM05D001741 ORTHO05D002196 3.3e-07 60.5 98 32.7
Psat6g211360 Pisum sativum HOM05D005464 ORTHO05D006803 3.3e-07 60.5 49 61.2
Sed0010202 Sechium edule HOM05D001741 ORTHO05D002196 3.3e-07 60.5 122 32.0
Actinidia25580 Actinidia chinensis HOM05D001741 ORTHO05D002196 4.3e-07 60.1 137 30.7
Sopen03g030440 Solanum pennellii HOM05D001741 ORTHO05D002196 4.3e-07 60.1 124 32.3
PGSC0003DMG400015241 Solanum tuberosum HOM05D001741 ORTHO05D002196 4.3e-07 60.1 124 32.3
Nitab4.5_0005560g0020 Nicotiana tabacum HOM05D001741 ORTHO05D002196 5.6e-07 59.7 147 29.9
FvH4_4g31780 Fragaria vesca HOM05D001741 ORTHO05D002196 7.3e-07 59.3 99 34.3
Peaxi162Scf00089g00622 Petunia axillaris HOM05D001741 ORTHO05D002196 7.3e-07 59.3 147 30.6
Actinidia33101 Actinidia chinensis HOM05D001741 ORTHO05D002196 9.5e-07 58.9 124 29.8
Medtr2g103890 Medicago truncatula HOM05D005464 ORTHO05D006803 9.5e-07 58.9 84 34.5
Nitab4.5_0007114g0010 Nicotiana tabacum HOM05D001741 ORTHO05D002196 9.5e-07 58.9 147 29.9
Solyc03g111310.3 Solanum lycopersicum HOM05D001741 ORTHO05D002196 9.5e-07 58.9 137 32.1
CAN.G352.18 Capsicum annuum HOM05D001741 ORTHO05D002196 1.2e-06 58.5 307 23.5
RcHm_v2.0_Chr4g0440371 Rosa chinensis HOM05D001741 ORTHO05D002196 1.2e-06 58.5 122 29.5
TWI75G0813 Tripterygium wilfordii HOM05D001741 ORTHO05D002196 1.2e-06 58.5 100 36.0
BraA02t06147Z Brassica rapa HOM05D002177 ORTHO05D002257 1.6e-06 58.2 336 21.7
RhsimUnG0231700 Rhododendron simsii HOM05D001741 ORTHO05D002196 1.6e-06 58.2 137 31.4
Sp7g25405 Schrenkiella parvula HOM05D002177 ORTHO05D002257 1.6e-06 58.2 332 20.2
THA.LOC104823814 Tarenaya hassleriana HOM05D005426 ORTHO05D006996 1.6e-06 58.2 411 21.2
Migut.I00503 Erythranthe guttata HOM05D001741 ORTHO05D002196 2.1e-06 57.8 124 30.6
Cpa.g.sc13.126 Carica papaya HOM05D001741 ORTHO05D002196 2.8e-06 57.4 366 22.7
FAN12G0099 Fragaria x ananassa HOM05D001741 ORTHO05D002196 2.8e-06 57.4 99 33.3
Lsat_1_v5_gn_4_80361 Lactuca sativa HOM05D001741 ORTHO05D002196 2.8e-06 57.4 229 24.9
Mapoly0030s0135 Marchantia polymorpha HOM05D005426 ORTHO05D006996 2.8e-06 57.4 390 23.8
RcHm_v2.0_Chr4g0440361 Rosa chinensis HOM05D001741 ORTHO05D002196 2.8e-06 57.4 98 30.6
HPP92_008090 Vanilla planifolia HOM05D001741 ORTHO05D002196 2.8e-06 57.4 349 22.9
AUR62028824 Chenopodium quinoa HOM05D001741 ORTHO05D002196 3.6e-06 57.0 99 32.3
DCAR_021615 Daucus carota HOM05D001741 ORTHO05D002196 3.6e-06 57.0 362 22.4
ECA246G2326 Erigeron canadensis HOM05D001741 ORTHO05D002196 3.6e-06 57.0 55 45.5
Lj2g0016570 Lotus japonicus HOM05D001741 ORTHO05D002196 3.6e-06 57.0 140 27.1
Sabra17G0045600 Salix brachista HOM05D001741 ORTHO05D002196 3.6e-06 57.0 122 28.7
COL.COLO4_23038 Corchorus olitorius HOM05D001741 ORTHO05D002196 4.7e-06 56.6 102 36.3
FAN22G2407 Fragaria x ananassa HOM05D001741 ORTHO05D002196 6.1e-06 56.2 98 30.6
HanXRQChr09g0273111 Helianthus annuus HOM05D001741 ORTHO05D002196 6.1e-06 56.2 229 23.6
FAN07G0918 Fragaria x ananassa HOM05D001741 ORTHO05D002196 8.0e-06 55.8 121 29.8
FAN17G1528 Fragaria x ananassa HOM05D001741 ORTHO05D002196 8.0e-06 55.8 98 30.6
Oeu018538.1 Olea europaea HOM05D001741 ORTHO05D002196 8.0e-06 55.8 201 28.9
Prupe.4G044300 Prunus persica HOM05D002177 ORTHO05D002257 8.0e-06 55.8 348 22.4
Hund02438 Selenicereus undatus HOM05D001741 ORTHO05D002196 8.0e-06 55.8 364 23.1
TAR374G0301 Trochodendron aralioides HOM05D001741 ORTHO05D002196 8.0e-06 55.8 124 30.6
unitig_744.g24644 Utricularia gibba HOM05D001741 ORTHO05D002196 8.0e-06 55.8 137 29.9


User provided reference genes

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