Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cpa.g.sc10.251 Carica papaya HOM05D007475 ORTHO05D009529 5.0e-80 301.2 170 100.0
Cpa.g.sc10.239 Carica papaya HOM05D007475 ORTHO05D009529 2.1e-78 295.8 170 98.2
Cpa.g.sc10.249 Carica papaya HOM05D007475 ORTHO05D009529 8.0e-70 267.3 170 92.4
Cpa.g.sc10.244 Carica papaya HOM05D007475 ORTHO05D009529 7.7e-65 250.8 170 79.4
Cpa.g.sc10.243 Carica papaya HOM05D007475 ORTHO05D009529 7.0e-58 227.6 168 79.2
Cpa.g.sc97.59 Carica papaya HOM05D007475 ORTHO05D009529 2.4e-26 122.9 164 47.0
AT5G54740 Arabidopsis thaliana HOM05D007475 ORTHO05D009529 9.9e-20 100.9 168 39.3
THA.LOC104813415 Tarenaya hassleriana HOM05D007475 ORTHO05D009529 2.2e-19 99.8 164 43.3
THA.LOC104799881 Tarenaya hassleriana HOM05D007475 ORTHO05D009529 3.8e-19 99.0 164 42.1
THA.LOC104822213 Tarenaya hassleriana HOM05D007475 ORTHO05D009529 1.4e-18 97.1 165 43.0
AT4G27150 Arabidopsis thaliana HOM05D007475 ORTHO05D009529 3.2e-18 95.9 168 38.7
AL7G25650 Arabidopsis lyrata HOM05D007475 ORTHO05D009529 4.2e-18 95.5 164 39.6
AL8G30160 Arabidopsis lyrata HOM05D007475 ORTHO05D009529 4.2e-18 95.5 168 37.5
Aa31LG3G10660 Aethionema arabicum HOM05D007475 ORTHO05D009529 9.3e-18 94.4 165 41.8
Sp6g16690 Schrenkiella parvula HOM05D007475 ORTHO05D009529 1.2e-17 94.0 170 38.8
THA.LOC104799882 Tarenaya hassleriana HOM05D007475 ORTHO05D009529 2.1e-17 93.2 165 41.8
THA.LOC104817654 Tarenaya hassleriana HOM05D007475 ORTHO05D009529 6.0e-17 91.7 165 41.2
AL7G25640 Arabidopsis lyrata HOM05D007475 ORTHO05D009529 7.8e-17 91.3 164 39.0
AT4G27170 Arabidopsis thaliana HOM05D007475 ORTHO05D009529 1.3e-16 90.5 168 38.1
AT4G27160 Arabidopsis thaliana HOM05D007475 ORTHO05D009529 8.7e-16 87.8 168 38.7
THA.LOC104817656 Tarenaya hassleriana HOM05D007475 ORTHO05D009529 2.5e-15 86.3 165 40.6
THA.LOC104822214 Tarenaya hassleriana HOM05D007475 ORTHO05D009529 2.5e-15 86.3 165 40.6
THA.LOC104822215 Tarenaya hassleriana HOM05D007475 ORTHO05D009529 2.5e-15 86.3 165 40.6
AL7G25660 Arabidopsis lyrata HOM05D007475 ORTHO05D009529 3.3e-15 85.9 168 37.5
AT4G27140 Arabidopsis thaliana HOM05D007475 ORTHO05D009529 5.6e-15 85.1 168 36.3
CARHR289420 Cardamine hirsuta HOM05D007475 ORTHO05D009529 5.6e-15 85.1 167 37.1
Ciclev10009848m.g Citrus clementina HOM05D007475 ORTHO05D005877 1.3e-14 84.0 162 40.1
Carub.0008s0615 Capsella rubella HOM05D007475 ORTHO05D009529 1.6e-14 83.6 164 37.2
Aa31LG5G10280 Aethionema arabicum HOM05D007475 ORTHO05D009529 2.8e-14 82.8 173 37.6
THA.LOC104817655 Tarenaya hassleriana HOM05D007475 ORTHO05D009529 3.6e-14 82.4 162 42.6
Sp7g25120 Schrenkiella parvula HOM05D007475 ORTHO05D009529 6.2e-14 81.6 179 35.2
Thhalv10015934m.g Eutrema salsugineum HOM05D007475 ORTHO05D009529 1.1e-13 80.9 168 36.9
C07p55330 Brassica napus HOM05D007475 ORTHO05D009529 1.8e-13 80.1 168 36.9
BolC7t46014H Brassica oleracea HOM05D007475 ORTHO05D009529 1.8e-13 80.1 168 36.9
TWI39G0980 Tripterygium wilfordii HOM05D006536 ORTHO05D005877 1.8e-13 80.1 167 35.9
Carub.0007s1367 Capsella rubella HOM05D007475 ORTHO05D009529 3.1e-13 79.3 169 36.1
Carub.0007s1370 Capsella rubella HOM05D007475 ORTHO05D009529 3.1e-13 79.3 164 37.8
Carub.0007s1368 Capsella rubella HOM05D007475 ORTHO05D009529 6.9e-13 78.2 171 37.4
BcaC06g32708 Brassica carinata HOM05D007475 ORTHO05D009529 9.0e-13 77.8 166 37.3
A03p57110 Brassica napus HOM05D007475 ORTHO05D009529 9.0e-13 77.8 171 38.0
A03p57140 Brassica napus HOM05D007475 ORTHO05D009529 9.0e-13 77.8 168 36.3
Thhalv10026791m.g Eutrema salsugineum HOM05D007475 ORTHO05D009529 9.0e-13 77.8 173 35.8
BraA03t14781Z Brassica rapa HOM05D007475 ORTHO05D009529 1.2e-12 77.4 179 36.9
Carub.0007s1369 Capsella rubella HOM05D007475 ORTHO05D009529 2.0e-12 76.6 170 35.3
CARHR058020 Cardamine hirsuta HOM05D007475 ORTHO05D009529 2.6e-12 76.3 168 35.1
Aa31LG5G10270 Aethionema arabicum HOM05D007475 ORTHO05D009529 5.8e-12 75.1 170 33.5
BcaB03g12530 Brassica carinata HOM05D007475 ORTHO05D009529 3.8e-11 72.4 177 35.6
BraA08t34007Z Brassica rapa HOM05D007475 ORTHO05D009529 4.9e-11 72.0 168 36.9
BcaC07g38274 Brassica carinata HOM05D007475 ORTHO05D009529 6.4e-11 71.6 167 36.5
C08p10230 Brassica napus HOM05D007475 ORTHO05D009529 6.4e-11 71.6 167 36.5
Ciclev10009789m.g Citrus clementina HOM05D007475 ORTHO05D009529 8.4e-11 71.2 164 36.6
CARHR234800 Cardamine hirsuta HOM05D007475 ORTHO05D009529 1.4e-10 70.5 129 40.3
A08p20510 Brassica napus HOM05D007475 ORTHO05D009529 4.2e-10 68.9 168 35.7
Cfa020407 Carpinus fangiana HOM05D006536 ORTHO05D005877 4.2e-10 68.9 160 33.8
Peaxi162Scf00450g00873 Petunia axillaris HOM05D006536 ORTHO05D005877 4.2e-10 68.9 159 37.7
BcaC09g49369 Brassica carinata HOM05D007475 ORTHO05D009529 7.1e-10 68.2 171 32.2
BcaNung03055 Brassica carinata HOM05D007475 ORTHO05D009529 7.1e-10 68.2 176 36.9
C01p23280 Brassica napus HOM05D007475 ORTHO05D009529 7.1e-10 68.2 171 32.2
C01p37410 Brassica napus HOM05D007475 ORTHO05D009529 7.1e-10 68.2 171 32.2
BolC1t03708H Brassica oleracea HOM05D007475 ORTHO05D009529 7.1e-10 68.2 171 32.2
BolC1t02261H Brassica oleracea HOM05D007475 ORTHO05D009529 1.6e-09 67.0 171 32.2
BolC1t02262H Brassica oleracea HOM05D007475 ORTHO05D009529 1.6e-09 67.0 174 34.5
CARHR289410 Cardamine hirsuta HOM05D007475 ORTHO05D009529 1.6e-09 67.0 168 31.0
C01p23290 Brassica napus HOM05D007475 ORTHO05D009529 2.1e-09 66.6 174 34.5
A01p18310 Brassica napus HOM05D007475 ORTHO05D009529 2.7e-09 66.2 170 30.0
Dinv26537 Davidia involucrata HOM05D006536 ORTHO05D005877 3.5e-09 65.9 160 39.4
Cfa020408 Carpinus fangiana HOM05D006536 ORTHO05D005877 4.6e-09 65.5 161 32.3
BcaNung00178 Brassica carinata HOM05D007475 ORTHO05D009529 6.0e-09 65.1 172 34.3
BcaNung00179 Brassica carinata HOM05D007475 ORTHO05D009529 6.0e-09 65.1 172 34.3
BolC1t02264H Brassica oleracea HOM05D007475 ORTHO05D009529 6.0e-09 65.1 174 31.6
BraA01t01784Z Brassica rapa HOM05D007475 ORTHO05D009529 6.0e-09 65.1 171 30.4
BcaC09g50609 Brassica carinata HOM05D007475 ORTHO05D009529 1.0e-08 64.3 171 31.0
Peaxi162Scf00714g00425 Petunia axillaris HOM05D006536 ORTHO05D005877 1.0e-08 64.3 160 31.9
BcaB01g05180 Brassica carinata HOM05D007475 ORTHO05D009529 1.3e-08 63.9 176 32.4
A01p18280 Brassica napus HOM05D007475 ORTHO05D009529 1.3e-08 63.9 171 30.4
C03p10150 Brassica napus HOM05D007475 ORTHO05D009529 1.3e-08 63.9 176 32.4
BolC3t13500H Brassica oleracea HOM05D007475 ORTHO05D009529 1.3e-08 63.9 176 32.4
BraA03t10193Z Brassica rapa HOM05D007475 ORTHO05D009529 1.3e-08 63.9 176 32.4
BolC1t02266H Brassica oleracea HOM05D007475 ORTHO05D009529 1.8e-08 63.5 174 31.0
BcaNung03054 Brassica carinata HOM05D007475 ORTHO05D009529 2.3e-08 63.2 189 29.1
A01p18330 Brassica napus HOM05D007475 ORTHO05D009529 2.3e-08 63.2 173 30.6
BraA01t01783Z Brassica rapa HOM05D007475 ORTHO05D009529 2.3e-08 63.2 173 30.6
BraA01t01785Z Brassica rapa HOM05D007475 ORTHO05D009529 2.3e-08 63.2 173 30.6
vmacro11762 Vaccinium macrocarpon HOM05D006536 ORTHO05D005877 3.0e-08 62.8 126 38.1
A01p18300 Brassica napus HOM05D007475 ORTHO05D009529 3.9e-08 62.4 171 29.8
COL.COLO4_09579 Corchorus olitorius HOM05D006536 ORTHO05D005877 3.9e-08 62.4 162 33.3
BcaB08g35832 Brassica carinata HOM05D007475 ORTHO05D009529 5.1e-08 62.0 133 34.6
Peaxi162Scf00450g00854 Petunia axillaris HOM05D006536 ORTHO05D005877 6.7e-08 61.6 157 33.1
BraA01t01786Z Brassica rapa HOM05D007475 ORTHO05D009529 8.7e-08 61.2 171 31.6
Sopen08g028810 Solanum pennellii HOM05D006536 ORTHO05D005877 8.7e-08 61.2 126 36.5
SGA_v2.0_scaffold13G06717 Striga asiatica HOM05D006536 ORTHO05D005877 8.7e-08 61.2 130 33.8
Peaxi162Scf00450g00816 Petunia axillaris HOM05D006536 ORTHO05D005877 1.1e-07 60.8 160 35.0
A01p18340 Brassica napus HOM05D007475 ORTHO05D009529 1.5e-07 60.5 172 30.8
Nitab4.5_0003924g0010 Nicotiana tabacum HOM05D006536 ORTHO05D005877 1.5e-07 60.5 140 32.9
Sed0024994 Sechium edule HOM05D006536 ORTHO05D005877 1.5e-07 60.5 162 31.5
Nitab4.5_0000397g0170 Nicotiana tabacum HOM05D006536 ORTHO05D005877 1.9e-07 60.1 157 35.0
BcaC09g50606 Brassica carinata HOM05D007475 ORTHO05D009529 2.5e-07 59.7 174 30.5
C01p23300 Brassica napus HOM05D007475 ORTHO05D009529 2.5e-07 59.7 174 30.5
BolC1t02563H Brassica oleracea HOM05D007475 ORTHO05D009529 3.3e-07 59.3 171 31.0
BcaC09g50364 Brassica carinata HOM05D007475 ORTHO05D009529 4.3e-07 58.9 171 31.0
C01p26200 Brassica napus HOM05D007475 ORTHO05D009529 5.6e-07 58.5 171 29.8
THA.LOC104809798 Tarenaya hassleriana HOM05D007475 ORTHO05D009529 7.4e-07 58.2 124 37.1
BcaC09g50602 Brassica carinata HOM05D007475 ORTHO05D009529 1.3e-06 57.4 174 31.6
BcaNung03058 Brassica carinata HOM05D007475 ORTHO05D009529 1.6e-06 57.0 190 30.0
Peaxi162Scf00057g00136 Petunia axillaris HOM05D006536 ORTHO05D005877 1.6e-06 57.0 158 33.5
COL.COLO4_15402 Corchorus olitorius HOM05D006536 ORTHO05D005877 2.1e-06 56.6 157 29.9
A01p20870 Brassica napus HOM05D007475 ORTHO05D009529 3.7e-06 55.8 171 29.8
BraA01t02006Z Brassica rapa HOM05D007475 ORTHO05D009529 3.7e-06 55.8 171 29.8
CANSAT11G1392 Cannabis sativa HOM05D006536 ORTHO05D005877 3.7e-06 55.8 120 33.3
ClCG10G005680 Citrullus lanatus HOM05D006536 ORTHO05D005877 4.8e-06 55.5 157 28.7
SGA_v2.0_scaffold13G06718 Striga asiatica HOM05D006536 ORTHO05D005877 4.8e-06 55.5 124 30.6
SHI26637 Sapria himalayana HOM05D006536 ORTHO05D005877 6.2e-06 55.1 158 30.4
Nitab4.5_0001479g0050 Nicotiana tabacum HOM05D006536 ORTHO05D005877 8.1e-06 54.7 157 40.8
vmacro11763 Vaccinium macrocarpon HOM05D006536 ORTHO05D005877 8.1e-06 54.7 127 37.0


User provided reference genes

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