Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cpa.g.sc10.244 Carica papaya HOM05D007475 ORTHO05D009529 1.4e-84 316.2 163 100.0
Cpa.g.sc10.251 Carica papaya HOM05D007475 ORTHO05D009529 1.7e-64 249.6 170 79.4
Cpa.g.sc10.239 Carica papaya HOM05D007475 ORTHO05D009529 3.7e-64 248.4 170 78.8
Cpa.g.sc10.249 Carica papaya HOM05D007475 ORTHO05D009529 3.7e-64 248.4 164 81.1
Cpa.g.sc10.243 Carica papaya HOM05D007475 ORTHO05D009529 2.2e-56 222.6 165 75.2
Cpa.g.sc97.59 Carica papaya HOM05D007475 ORTHO05D009529 2.0e-25 119.8 157 45.9
THA.LOC104799881 Tarenaya hassleriana HOM05D007475 ORTHO05D009529 9.8e-25 117.5 157 47.8
Sp6g16690 Schrenkiella parvula HOM05D007475 ORTHO05D009529 1.3e-24 117.1 163 47.9
THA.LOC104813415 Tarenaya hassleriana HOM05D007475 ORTHO05D009529 6.3e-24 114.8 157 45.9
AT5G54740 Arabidopsis thaliana HOM05D007475 ORTHO05D009529 8.3e-24 114.4 161 44.1
AL8G30160 Arabidopsis lyrata HOM05D007475 ORTHO05D009529 9.2e-23 110.9 161 42.2
THA.LOC104822213 Tarenaya hassleriana HOM05D007475 ORTHO05D009529 9.2e-23 110.9 155 47.1
AT4G27150 Arabidopsis thaliana HOM05D007475 ORTHO05D009529 2.7e-22 109.4 162 43.2
THA.LOC104799882 Tarenaya hassleriana HOM05D007475 ORTHO05D009529 3.5e-22 109.0 155 46.5
THA.LOC104817654 Tarenaya hassleriana HOM05D007475 ORTHO05D009529 4.5e-22 108.6 156 46.8
Aa31LG3G10660 Aethionema arabicum HOM05D007475 ORTHO05D009529 5.9e-22 108.2 156 48.1
AL7G25650 Arabidopsis lyrata HOM05D007475 ORTHO05D009529 5.9e-22 108.2 158 43.7
AL7G25640 Arabidopsis lyrata HOM05D007475 ORTHO05D009529 1.1e-20 104.0 158 43.0
AT4G27170 Arabidopsis thaliana HOM05D007475 ORTHO05D009529 5.6e-20 101.7 162 43.2
THA.LOC104817656 Tarenaya hassleriana HOM05D007475 ORTHO05D009529 5.6e-20 101.7 157 45.2
THA.LOC104822214 Tarenaya hassleriana HOM05D007475 ORTHO05D009529 5.6e-20 101.7 157 45.2
THA.LOC104822215 Tarenaya hassleriana HOM05D007475 ORTHO05D009529 5.6e-20 101.7 157 45.2
Thhalv10015934m.g Eutrema salsugineum HOM05D007475 ORTHO05D009529 7.3e-20 101.3 160 41.2
AT4G27160 Arabidopsis thaliana HOM05D007475 ORTHO05D009529 4.7e-19 98.6 157 42.0
AL7G25660 Arabidopsis lyrata HOM05D007475 ORTHO05D009529 1.8e-18 96.7 159 41.5
AT4G27140 Arabidopsis thaliana HOM05D007475 ORTHO05D009529 1.8e-18 96.7 159 40.3
C07p55330 Brassica napus HOM05D007475 ORTHO05D009529 6.8e-18 94.7 161 40.4
BolC7t46014H Brassica oleracea HOM05D007475 ORTHO05D009529 6.8e-18 94.7 161 40.4
Carub.0007s1368 Capsella rubella HOM05D007475 ORTHO05D009529 6.8e-18 94.7 164 42.1
Ciclev10009848m.g Citrus clementina HOM05D007475 ORTHO05D005877 1.2e-17 94.0 154 44.8
BcaC06g32708 Brassica carinata HOM05D007475 ORTHO05D009529 2.0e-17 93.2 159 42.1
Carub.0007s1370 Capsella rubella HOM05D007475 ORTHO05D009529 2.0e-17 93.2 157 40.1
A03p57140 Brassica napus HOM05D007475 ORTHO05D009529 3.4e-17 92.4 161 39.8
BraA03t14781Z Brassica rapa HOM05D007475 ORTHO05D009529 3.4e-17 92.4 173 41.0
THA.LOC104817655 Tarenaya hassleriana HOM05D007475 ORTHO05D009529 3.4e-17 92.4 154 42.2
Aa31LG5G10280 Aethionema arabicum HOM05D007475 ORTHO05D009529 9.8e-17 90.9 167 38.9
CARHR289420 Cardamine hirsuta HOM05D007475 ORTHO05D009529 2.9e-16 89.4 162 38.3
Thhalv10026791m.g Eutrema salsugineum HOM05D007475 ORTHO05D009529 2.9e-16 89.4 170 36.5
Carub.0007s1367 Capsella rubella HOM05D007475 ORTHO05D009529 3.7e-16 89.0 161 39.1
CARHR058020 Cardamine hirsuta HOM05D007475 ORTHO05D009529 4.9e-16 88.6 164 38.4
Sp7g25120 Schrenkiella parvula HOM05D007475 ORTHO05D009529 6.4e-16 88.2 179 36.3
Carub.0007s1369 Capsella rubella HOM05D007475 ORTHO05D009529 1.4e-15 87.0 161 38.5
A03p57110 Brassica napus HOM05D007475 ORTHO05D009529 4.1e-15 85.5 165 40.6
Carub.0008s0615 Capsella rubella HOM05D007475 ORTHO05D009529 7.0e-15 84.7 158 39.9
BraA08t34007Z Brassica rapa HOM05D007475 ORTHO05D009529 2.7e-14 82.8 162 39.5
BcaNung03055 Brassica carinata HOM05D007475 ORTHO05D009529 6.0e-14 81.6 175 38.3
TWI39G0980 Tripterygium wilfordii HOM05D006536 ORTHO05D005877 7.8e-14 81.3 159 37.1
BcaC07g38274 Brassica carinata HOM05D007475 ORTHO05D009529 2.3e-13 79.7 162 38.9
C08p10230 Brassica napus HOM05D007475 ORTHO05D009529 2.3e-13 79.7 162 38.9
A08p20510 Brassica napus HOM05D007475 ORTHO05D009529 3.0e-13 79.3 162 38.3
CARHR289410 Cardamine hirsuta HOM05D007475 ORTHO05D009529 3.0e-13 79.3 163 35.0
BcaB01g05180 Brassica carinata HOM05D007475 ORTHO05D009529 5.0e-13 78.6 176 34.7
C03p10150 Brassica napus HOM05D007475 ORTHO05D009529 5.0e-13 78.6 176 34.7
BolC3t13500H Brassica oleracea HOM05D007475 ORTHO05D009529 5.0e-13 78.6 176 34.7
BraA03t10193Z Brassica rapa HOM05D007475 ORTHO05D009529 5.0e-13 78.6 176 34.7
Aa31LG5G10270 Aethionema arabicum HOM05D007475 ORTHO05D009529 8.6e-13 77.8 165 34.5
Cfa020408 Carpinus fangiana HOM05D006536 ORTHO05D005877 1.5e-12 77.0 152 38.8
BcaB03g12530 Brassica carinata HOM05D007475 ORTHO05D009529 2.5e-12 76.3 171 36.3
BcaC09g49369 Brassica carinata HOM05D007475 ORTHO05D009529 2.5e-12 76.3 171 35.7
C01p23280 Brassica napus HOM05D007475 ORTHO05D009529 2.5e-12 76.3 171 35.7
C01p37410 Brassica napus HOM05D007475 ORTHO05D009529 2.5e-12 76.3 171 35.7
BolC1t03708H Brassica oleracea HOM05D007475 ORTHO05D009529 2.5e-12 76.3 171 35.7
Cfa020407 Carpinus fangiana HOM05D006536 ORTHO05D005877 3.3e-12 75.9 151 38.4
BcaNung00178 Brassica carinata HOM05D007475 ORTHO05D009529 5.6e-12 75.1 170 37.1
BcaNung00179 Brassica carinata HOM05D007475 ORTHO05D009529 5.6e-12 75.1 170 37.1
BolC1t02262H Brassica oleracea HOM05D007475 ORTHO05D009529 7.3e-12 74.7 172 36.6
C01p23290 Brassica napus HOM05D007475 ORTHO05D009529 9.5e-12 74.3 172 36.6
Peaxi162Scf00714g00425 Petunia axillaris HOM05D006536 ORTHO05D005877 1.2e-11 73.9 154 34.4
CARHR234800 Cardamine hirsuta HOM05D007475 ORTHO05D009529 2.1e-11 73.2 130 43.1
THA.LOC104809798 Tarenaya hassleriana HOM05D007475 ORTHO05D009529 2.1e-11 73.2 117 42.7
A01p18330 Brassica napus HOM05D007475 ORTHO05D009529 2.8e-11 72.8 173 33.5
BraA01t01783Z Brassica rapa HOM05D007475 ORTHO05D009529 2.8e-11 72.8 173 33.5
BraA01t01785Z Brassica rapa HOM05D007475 ORTHO05D009529 2.8e-11 72.8 173 33.5
BcaC09g50609 Brassica carinata HOM05D007475 ORTHO05D009529 3.6e-11 72.4 171 34.5
Peaxi162Scf00450g00873 Petunia axillaris HOM05D006536 ORTHO05D005877 3.6e-11 72.4 149 38.9
Peaxi162Scf00450g00854 Petunia axillaris HOM05D006536 ORTHO05D005877 6.2e-11 71.6 149 37.6
BcaC09g50606 Brassica carinata HOM05D007475 ORTHO05D009529 8.0e-11 71.2 174 33.9
A01p18280 Brassica napus HOM05D007475 ORTHO05D009529 8.0e-11 71.2 171 33.9
BolC1t02264H Brassica oleracea HOM05D007475 ORTHO05D009529 8.0e-11 71.2 174 33.9
Nitab4.5_0003924g0010 Nicotiana tabacum HOM05D006536 ORTHO05D005877 8.0e-11 71.2 132 37.9
BolC1t02261H Brassica oleracea HOM05D007475 ORTHO05D009529 1.4e-10 70.5 171 34.5
BolC1t02266H Brassica oleracea HOM05D007475 ORTHO05D009529 2.3e-10 69.7 174 33.3
BcaNung03054 Brassica carinata HOM05D007475 ORTHO05D009529 3.1e-10 69.3 189 31.2
BraA01t01784Z Brassica rapa HOM05D007475 ORTHO05D009529 3.1e-10 69.3 171 33.3
BcaB08g35832 Brassica carinata HOM05D007475 ORTHO05D009529 4.0e-10 68.9 132 38.6
Nitab4.5_0000397g0170 Nicotiana tabacum HOM05D006536 ORTHO05D005877 4.0e-10 68.9 150 39.3
A01p18310 Brassica napus HOM05D007475 ORTHO05D009529 5.2e-10 68.6 170 32.4
BolC1t02563H Brassica oleracea HOM05D007475 ORTHO05D009529 5.2e-10 68.6 169 33.7
BraA01t01786Z Brassica rapa HOM05D007475 ORTHO05D009529 5.2e-10 68.6 171 35.1
Ciclev10009789m.g Citrus clementina HOM05D007475 ORTHO05D009529 5.2e-10 68.6 157 34.4
BcaC09g50364 Brassica carinata HOM05D007475 ORTHO05D009529 6.8e-10 68.2 169 33.7
A01p18340 Brassica napus HOM05D007475 ORTHO05D009529 6.8e-10 68.2 172 32.6
BcaC09g50602 Brassica carinata HOM05D007475 ORTHO05D009529 8.9e-10 67.8 170 32.9
A03p08700 Brassica napus HOM05D007475 ORTHO05D009529 8.9e-10 67.8 140 38.6
C01p26200 Brassica napus HOM05D007475 ORTHO05D009529 8.9e-10 67.8 169 32.5
ClCG10G005680 Citrullus lanatus HOM05D006536 ORTHO05D005877 1.2e-09 67.4 149 32.9
Peaxi162Scf00057g00136 Petunia axillaris HOM05D006536 ORTHO05D005877 1.2e-09 67.4 149 40.9
C01p23300 Brassica napus HOM05D007475 ORTHO05D009529 1.5e-09 67.0 174 32.8
A01p18300 Brassica napus HOM05D007475 ORTHO05D009529 2.0e-09 66.6 171 32.7
A01p20870 Brassica napus HOM05D007475 ORTHO05D009529 2.0e-09 66.6 170 32.9
BraA01t02006Z Brassica rapa HOM05D007475 ORTHO05D009529 2.0e-09 66.6 170 32.9
Sed0024994 Sechium edule HOM05D006536 ORTHO05D005877 2.0e-09 66.6 147 33.3
Dinv26537 Davidia involucrata HOM05D006536 ORTHO05D005877 2.6e-09 66.2 152 39.5
SGA_v2.0_scaffold13G06717 Striga asiatica HOM05D006536 ORTHO05D005877 5.8e-09 65.1 118 37.3
SGA_v2.0_scaffold13G06718 Striga asiatica HOM05D006536 ORTHO05D005877 5.8e-09 65.1 118 35.6
Peaxi162Scf00450g00816 Petunia axillaris HOM05D006536 ORTHO05D005877 9.8e-09 64.3 149 36.9
BcaNung03058 Brassica carinata HOM05D007475 ORTHO05D009529 1.3e-08 63.9 190 31.6
Nitab4.5_0000472g0270 Nicotiana tabacum HOM05D006536 ORTHO05D005877 1.3e-08 63.9 150 38.7
Solyc07g064210.2 Solanum lycopersicum HOM05D006536 ORTHO05D005877 1.3e-08 63.9 155 36.8
vmacro11762 Vaccinium macrocarpon HOM05D006536 ORTHO05D005877 1.7e-08 63.5 124 38.7
COL.COLO4_09579 Corchorus olitorius HOM05D006536 ORTHO05D005877 2.2e-08 63.2 154 33.1
PGSC0003DMG400001033 Solanum tuberosum HOM05D006536 ORTHO05D005877 2.9e-08 62.8 156 35.9
CiPaw.12G126700 Carya illinoinensis HOM05D006536 ORTHO05D005877 6.4e-08 61.6 146 35.6
Sopen08g028810 Solanum pennellii HOM05D006536 ORTHO05D005877 6.4e-08 61.6 120 35.8
Sopen07g032350 Solanum pennellii HOM05D006536 ORTHO05D005877 1.9e-07 60.1 118 40.7
Nitab4.5_0004487g0010 Nicotiana tabacum HOM05D006536 ORTHO05D005877 2.4e-07 59.7 110 37.3
Nitab4.5_0006023g0020 Nicotiana tabacum HOM05D006536 ORTHO05D005877 2.4e-07 59.7 149 35.6
vmacro11763 Vaccinium macrocarpon HOM05D006536 ORTHO05D005877 3.2e-07 59.3 148 34.5
CAN.G981.16 Capsicum annuum HOM05D006536 ORTHO05D005877 4.1e-07 58.9 152 30.9
COL.COLO4_15402 Corchorus olitorius HOM05D006536 ORTHO05D005877 5.4e-07 58.5 148 31.8
Gohir.A01G075200 Gossypium hirsutum HOM05D015826 ORTHO05D005877 5.4e-07 58.5 149 32.2
HanXRQChr11g0332911 Helianthus annuus HOM05D009374 ORTHO05D012864 5.4e-07 58.5 163 34.4
Thecc.07G051300 Theobroma cacao HOM05D006536 ORTHO05D005877 5.4e-07 58.5 148 31.1
CANSAT11G1392 Cannabis sativa HOM05D006536 ORTHO05D005877 9.2e-07 57.8 113 35.4
ClCG09G018590 Citrullus lanatus HOM05D006536 ORTHO05D005877 1.2e-06 57.4 113 31.9
Gohir.D01G062500 Gossypium hirsutum HOM05D015826 ORTHO05D005877 1.2e-06 57.4 149 30.9
SHI26637 Sapria himalayana HOM05D006536 ORTHO05D005877 1.2e-06 57.4 155 30.3
Eucgr.F03431 Eucalyptus grandis HOM05D006536 ORTHO05D005877 1.6e-06 57.0 150 33.3
Solyc08g080480.3 Solanum lycopersicum HOM05D006536 ORTHO05D005877 2.1e-06 56.6 141 31.2
Nitab4.5_0001479g0070 Nicotiana tabacum HOM05D006536 ORTHO05D005877 2.7e-06 56.2 134 38.1
Sopen07g032360 Solanum pennellii HOM05D006536 ORTHO05D005877 2.7e-06 56.2 157 33.8
Nitab4.5_0003461g0020 Nicotiana tabacum HOM05D003749 ORTHO05D004421 3.5e-06 55.8 137 36.5
Nitab4.5_0001479g0050 Nicotiana tabacum HOM05D006536 ORTHO05D005877 4.6e-06 55.5 150 36.0
Sopen08g028800 Solanum pennellii HOM05D006536 ORTHO05D005877 4.6e-06 55.5 112 33.9
MELO3C025418.2 Cucumis melo HOM05D006536 ORTHO05D005877 6.0e-06 55.1 148 29.7
Gorai.002G083200 Gossypium raimondii HOM05D015826 ORTHO05D005877 6.0e-06 55.1 149 30.2
Migut.J01035 Erythranthe guttata HOM05D006536 ORTHO05D005877 7.8e-06 54.7 158 31.0
PGR083G0291 Punica granatum HOM05D006536 ORTHO05D005877 7.8e-06 54.7 156 32.1


User provided reference genes

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