Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cpa.g.sc10.243 Carica papaya HOM05D007475 ORTHO05D009529 2.5e-71 272.3 168 100.0
Cpa.g.sc10.239 Carica papaya HOM05D007475 ORTHO05D009529 1.3e-61 240.0 168 79.8
Cpa.g.sc10.251 Carica papaya HOM05D007475 ORTHO05D009529 5.1e-61 238.0 168 79.2
Cpa.g.sc10.244 Carica papaya HOM05D007475 ORTHO05D009529 7.4e-60 234.2 165 75.2
Cpa.g.sc10.249 Carica papaya HOM05D007475 ORTHO05D009529 1.8e-58 229.6 165 78.8
Cpa.g.sc97.59 Carica papaya HOM05D007475 ORTHO05D009529 3.8e-24 115.5 161 44.1
AT4G27150 Arabidopsis thaliana HOM05D007475 ORTHO05D009529 1.2e-20 104.0 165 39.4
THA.LOC104813415 Tarenaya hassleriana HOM05D007475 ORTHO05D009529 5.7e-20 101.7 160 40.0
AL7G25650 Arabidopsis lyrata HOM05D007475 ORTHO05D009529 1.3e-19 100.5 161 38.5
THA.LOC104799881 Tarenaya hassleriana HOM05D007475 ORTHO05D009529 1.3e-19 100.5 161 41.6
AL7G25640 Arabidopsis lyrata HOM05D007475 ORTHO05D009529 3.7e-19 99.0 165 38.2
AT5G54740 Arabidopsis thaliana HOM05D007475 ORTHO05D009529 1.4e-18 97.1 165 38.8
AT4G27170 Arabidopsis thaliana HOM05D007475 ORTHO05D009529 2.4e-18 96.3 168 37.5
THA.LOC104822213 Tarenaya hassleriana HOM05D007475 ORTHO05D009529 2.4e-18 96.3 160 41.2
Aa31LG3G10660 Aethionema arabicum HOM05D007475 ORTHO05D009529 4.1e-18 95.5 159 39.6
AT4G27160 Arabidopsis thaliana HOM05D007475 ORTHO05D009529 4.1e-18 95.5 165 38.8
THA.LOC104799882 Tarenaya hassleriana HOM05D007475 ORTHO05D009529 1.2e-17 94.0 161 41.0
Sp6g16690 Schrenkiella parvula HOM05D007475 ORTHO05D009529 2.0e-17 93.2 167 38.9
THA.LOC104817654 Tarenaya hassleriana HOM05D007475 ORTHO05D009529 3.5e-17 92.4 160 40.0
AL7G25660 Arabidopsis lyrata HOM05D007475 ORTHO05D009529 1.7e-16 90.1 162 37.0
AL8G30160 Arabidopsis lyrata HOM05D007475 ORTHO05D009529 2.9e-16 89.4 165 35.8
AT4G27140 Arabidopsis thaliana HOM05D007475 ORTHO05D009529 5.0e-16 88.6 162 36.4
BcaC06g32708 Brassica carinata HOM05D007475 ORTHO05D009529 1.5e-15 87.0 162 36.4
CARHR289420 Cardamine hirsuta HOM05D007475 ORTHO05D009529 1.5e-15 87.0 164 32.9
Carub.0007s1370 Capsella rubella HOM05D007475 ORTHO05D009529 1.9e-15 86.7 161 36.6
THA.LOC104817656 Tarenaya hassleriana HOM05D007475 ORTHO05D009529 3.3e-15 85.9 162 38.9
THA.LOC104822214 Tarenaya hassleriana HOM05D007475 ORTHO05D009529 3.3e-15 85.9 162 38.9
THA.LOC104822215 Tarenaya hassleriana HOM05D007475 ORTHO05D009529 3.3e-15 85.9 162 38.9
Carub.0007s1367 Capsella rubella HOM05D007475 ORTHO05D009529 5.6e-15 85.1 165 35.2
Carub.0008s0615 Capsella rubella HOM05D007475 ORTHO05D009529 5.6e-15 85.1 161 35.4
THA.LOC104817655 Tarenaya hassleriana HOM05D007475 ORTHO05D009529 7.3e-15 84.7 159 42.8
Aa31LG5G10280 Aethionema arabicum HOM05D007475 ORTHO05D009529 9.5e-15 84.3 170 36.5
A03p57110 Brassica napus HOM05D007475 ORTHO05D009529 1.6e-14 83.6 171 36.3
Ciclev10009848m.g Citrus clementina HOM05D007475 ORTHO05D005877 2.1e-14 83.2 159 35.2
Thhalv10015934m.g Eutrema salsugineum HOM05D007475 ORTHO05D009529 2.1e-14 83.2 165 35.8
Carub.0007s1369 Capsella rubella HOM05D007475 ORTHO05D009529 2.8e-14 82.8 165 34.5
C07p55330 Brassica napus HOM05D007475 ORTHO05D009529 4.7e-14 82.0 164 34.1
BolC7t46014H Brassica oleracea HOM05D007475 ORTHO05D009529 4.7e-14 82.0 164 34.1
BraA03t14781Z Brassica rapa HOM05D007475 ORTHO05D009529 4.7e-14 82.0 176 34.1
Carub.0007s1368 Capsella rubella HOM05D007475 ORTHO05D009529 1.8e-13 80.1 168 35.1
CARHR058020 Cardamine hirsuta HOM05D007475 ORTHO05D009529 1.8e-13 80.1 165 33.3
A03p57140 Brassica napus HOM05D007475 ORTHO05D009529 2.3e-13 79.7 164 33.5
Aa31LG5G10270 Aethionema arabicum HOM05D007475 ORTHO05D009529 4.0e-13 79.0 167 32.9
BcaC07g38274 Brassica carinata HOM05D007475 ORTHO05D009529 5.2e-13 78.6 164 34.8
C08p10230 Brassica napus HOM05D007475 ORTHO05D009529 5.2e-13 78.6 164 34.8
Thhalv10026791m.g Eutrema salsugineum HOM05D007475 ORTHO05D009529 5.2e-13 78.6 174 32.8
TWI39G0980 Tripterygium wilfordii HOM05D006536 ORTHO05D005877 5.2e-13 78.6 166 34.9
BraA08t34007Z Brassica rapa HOM05D007475 ORTHO05D009529 8.9e-13 77.8 164 34.1
Sp7g25120 Schrenkiella parvula HOM05D007475 ORTHO05D009529 8.9e-13 77.8 178 35.4
BcaNung03055 Brassica carinata HOM05D007475 ORTHO05D009529 1.5e-12 77.0 175 39.4
BcaB03g12530 Brassica carinata HOM05D007475 ORTHO05D009529 7.5e-12 74.7 174 33.3
BcaNung00178 Brassica carinata HOM05D007475 ORTHO05D009529 7.5e-12 74.7 169 34.9
BcaNung00179 Brassica carinata HOM05D007475 ORTHO05D009529 7.5e-12 74.7 169 34.9
BcaC09g49369 Brassica carinata HOM05D007475 ORTHO05D009529 1.3e-11 73.9 171 34.5
BcaC09g50364 Brassica carinata HOM05D007475 ORTHO05D009529 1.3e-11 73.9 169 34.9
C01p23280 Brassica napus HOM05D007475 ORTHO05D009529 1.3e-11 73.9 171 34.5
C01p26200 Brassica napus HOM05D007475 ORTHO05D009529 1.3e-11 73.9 169 34.9
C01p37410 Brassica napus HOM05D007475 ORTHO05D009529 1.3e-11 73.9 171 34.5
BolC1t02563H Brassica oleracea HOM05D007475 ORTHO05D009529 1.3e-11 73.9 169 34.9
BolC1t03708H Brassica oleracea HOM05D007475 ORTHO05D009529 1.3e-11 73.9 171 34.5
CARHR289410 Cardamine hirsuta HOM05D007475 ORTHO05D009529 1.3e-11 73.9 165 31.5
A08p20510 Brassica napus HOM05D007475 ORTHO05D009529 1.7e-11 73.6 164 32.9
BraA01t01786Z Brassica rapa HOM05D007475 ORTHO05D009529 2.2e-11 73.2 170 35.9
C01p23290 Brassica napus HOM05D007475 ORTHO05D009529 8.3e-11 71.2 173 34.1
BolC1t02262H Brassica oleracea HOM05D007475 ORTHO05D009529 8.3e-11 71.2 173 34.1
BolC1t02261H Brassica oleracea HOM05D007475 ORTHO05D009529 1.4e-10 70.5 171 32.7
BcaC09g50609 Brassica carinata HOM05D007475 ORTHO05D009529 1.8e-10 70.1 171 33.3
A01p18330 Brassica napus HOM05D007475 ORTHO05D009529 1.8e-10 70.1 173 35.3
A01p20870 Brassica napus HOM05D007475 ORTHO05D009529 1.8e-10 70.1 170 34.1
BraA01t01783Z Brassica rapa HOM05D007475 ORTHO05D009529 1.8e-10 70.1 173 35.3
BraA01t01785Z Brassica rapa HOM05D007475 ORTHO05D009529 1.8e-10 70.1 173 35.3
BraA01t02006Z Brassica rapa HOM05D007475 ORTHO05D009529 1.8e-10 70.1 170 34.1
BcaC09g50606 Brassica carinata HOM05D007475 ORTHO05D009529 2.4e-10 69.7 174 35.1
A01p18280 Brassica napus HOM05D007475 ORTHO05D009529 2.4e-10 69.7 171 32.7
BraA01t01784Z Brassica rapa HOM05D007475 ORTHO05D009529 3.2e-10 69.3 171 31.0
Cfa020407 Carpinus fangiana HOM05D006536 ORTHO05D005877 9.2e-10 67.8 156 31.4
Cfa020408 Carpinus fangiana HOM05D006536 ORTHO05D005877 9.2e-10 67.8 157 31.8
Ciclev10009789m.g Citrus clementina HOM05D007475 ORTHO05D009529 9.2e-10 67.8 161 32.9
A01p18340 Brassica napus HOM05D007475 ORTHO05D009529 1.2e-09 67.4 172 33.1
A01p18310 Brassica napus HOM05D007475 ORTHO05D009529 1.6e-09 67.0 170 30.6
A01p18300 Brassica napus HOM05D007475 ORTHO05D009529 2.0e-09 66.6 171 30.4
BolC1t02264H Brassica oleracea HOM05D007475 ORTHO05D009529 2.7e-09 66.2 174 32.8
BcaC09g50602 Brassica carinata HOM05D007475 ORTHO05D009529 3.5e-09 65.9 174 33.9
THA.LOC104809798 Tarenaya hassleriana HOM05D007475 ORTHO05D009529 3.5e-09 65.9 121 38.0
BcaB01g05180 Brassica carinata HOM05D007475 ORTHO05D009529 4.6e-09 65.5 176 33.5
C03p10150 Brassica napus HOM05D007475 ORTHO05D009529 4.6e-09 65.5 176 33.5
BolC3t13500H Brassica oleracea HOM05D007475 ORTHO05D009529 4.6e-09 65.5 176 33.5
BraA03t10193Z Brassica rapa HOM05D007475 ORTHO05D009529 4.6e-09 65.5 176 33.5
CARHR234800 Cardamine hirsuta HOM05D007475 ORTHO05D009529 4.6e-09 65.5 129 35.7
BcaNung03054 Brassica carinata HOM05D007475 ORTHO05D009529 5.9e-09 65.1 189 33.9
C01p23300 Brassica napus HOM05D007475 ORTHO05D009529 7.8e-09 64.7 174 32.2
BolC1t02266H Brassica oleracea HOM05D007475 ORTHO05D009529 7.8e-09 64.7 174 32.2
Peaxi162Scf00450g00873 Petunia axillaris HOM05D006536 ORTHO05D005877 1.0e-08 64.3 153 34.0
Peaxi162Scf00714g00425 Petunia axillaris HOM05D006536 ORTHO05D005877 1.3e-08 63.9 156 29.5
BcaNung03058 Brassica carinata HOM05D007475 ORTHO05D009529 1.7e-08 63.5 189 32.3
Dinv26537 Davidia involucrata HOM05D006536 ORTHO05D005877 1.7e-08 63.5 157 36.3
SGA_v2.0_scaffold13G06718 Striga asiatica HOM05D006536 ORTHO05D005877 1.1e-07 60.8 112 32.1
Peaxi162Scf00057g00136 Petunia axillaris HOM05D006536 ORTHO05D005877 1.5e-07 60.5 153 32.7
SGA_v2.0_scaffold13G06717 Striga asiatica HOM05D006536 ORTHO05D005877 1.5e-07 60.5 112 33.0
BcaB08g35832 Brassica carinata HOM05D007475 ORTHO05D009529 1.9e-07 60.1 133 33.8
CANSAT11G1392 Cannabis sativa HOM05D006536 ORTHO05D005877 1.9e-07 60.1 117 32.5
PGR083G0291 Punica granatum HOM05D006536 ORTHO05D005877 2.5e-07 59.7 165 35.8
Sopen08g028810 Solanum pennellii HOM05D006536 ORTHO05D005877 2.5e-07 59.7 112 33.9
Nitab4.5_0000397g0170 Nicotiana tabacum HOM05D006536 ORTHO05D005877 3.3e-07 59.3 154 32.5
vmacro11762 Vaccinium macrocarpon HOM05D006536 ORTHO05D005877 4.3e-07 58.9 126 34.1
Eucgr.F03431 Eucalyptus grandis HOM05D006536 ORTHO05D005877 5.6e-07 58.5 112 36.6
Peaxi162Scf00450g00816 Petunia axillaris HOM05D006536 ORTHO05D005877 7.3e-07 58.2 154 33.1
Atru.chr2.3226 Acer truncatum HOM05D001264 ORTHO05D001167 9.5e-07 57.8 118 32.2
Nitab4.5_0000472g0270 Nicotiana tabacum HOM05D006536 ORTHO05D005877 1.6e-06 57.0 154 31.2
COL.COLO4_09579 Corchorus olitorius HOM05D006536 ORTHO05D005877 2.1e-06 56.6 159 28.3
DCAR_022529 Daucus carota HOM05D006536 ORTHO05D005877 2.1e-06 56.6 77 35.1
Peaxi162Scf00450g00854 Petunia axillaris HOM05D006536 ORTHO05D005877 2.8e-06 56.2 154 29.2
Nitab4.5_0001479g0070 Nicotiana tabacum HOM05D006536 ORTHO05D005877 3.6e-06 55.8 67 44.8
Sed0024994 Sechium edule HOM05D006536 ORTHO05D005877 3.6e-06 55.8 152 29.6
PGSC0003DMG400001033 Solanum tuberosum HOM05D006536 ORTHO05D005877 3.6e-06 55.8 158 30.4


User provided reference genes

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