Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cpa.g.sc10.20 Carica papaya HOM05D003886 ORTHO05D004587 1.0e-229 799.7 389 100.0
Aa31LG4G1970 Aethionema arabicum HOM05D003886 ORTHO05D004587 1.9e-90 337.0 193 83.4
THA.LOC104808112 Tarenaya hassleriana HOM05D003886 ORTHO05D004587 1.9e-90 337.0 193 83.4
Thecc.06G049000 Theobroma cacao HOM05D003886 ORTHO05D004587 3.5e-89 332.8 193 85.0
COL.COLO4_26802 Corchorus olitorius HOM05D003886 ORTHO05D004587 1.5e-87 327.4 193 82.4
Gohir.D10G001000 Gossypium hirsutum HOM05D003886 ORTHO05D004587 1.9e-87 327.0 193 82.9
Gorai.011G001300 Gossypium raimondii HOM05D003886 ORTHO05D004587 1.9e-87 327.0 193 82.9
Gohir.A10G000800 Gossypium hirsutum HOM05D003886 ORTHO05D004587 5.7e-87 325.5 193 82.4
Sp5g34070 Schrenkiella parvula HOM05D003886 ORTHO05D004587 7.4e-87 325.1 193 81.9
CiPaw.01G092000 Carya illinoinensis HOM05D003886 ORTHO05D004587 8.2e-86 321.6 194 81.4
Dinv30973 Davidia involucrata HOM05D003886 ORTHO05D004587 1.1e-85 321.2 193 82.4
Thhalv10018536m.g Eutrema salsugineum HOM05D003886 ORTHO05D004587 1.4e-85 320.9 194 81.4
TWI75G0340 Tripterygium wilfordii HOM05D003886 ORTHO05D004587 1.8e-85 320.5 193 78.8
Carub.0002s2589 Capsella rubella HOM05D003886 ORTHO05D004587 6.9e-85 318.5 193 80.3
MELO3C015232.2 Cucumis melo HOM05D003886 ORTHO05D004587 6.9e-85 318.5 193 80.3
CsaV3_1G038140 Cucumis sativus L. HOM05D003886 ORTHO05D004587 6.9e-85 318.5 193 80.3
AT1G79020 Arabidopsis thaliana HOM05D003886 ORTHO05D004587 9.0e-85 318.2 193 80.8
CARHR072690 Cardamine hirsuta HOM05D003886 ORTHO05D004587 9.0e-85 318.2 199 78.4
Manes.03G095300 Manihot esculenta HOM05D003886 ORTHO05D004587 1.5e-84 317.4 195 81.5
AL2G39480 Arabidopsis lyrata HOM05D003886 ORTHO05D004587 3.4e-84 316.2 195 80.0
Duzib192G0492 Durio zibethinus HOM05D003886 ORTHO05D004587 3.4e-84 316.2 193 81.3
GSVIVG01000280001 Vitis vinifera HOM05D003886 ORTHO05D004587 3.4e-84 316.2 193 79.8
Manes.15G112100 Manihot esculenta HOM05D003886 ORTHO05D004587 2.9e-83 313.2 195 79.0
Dinv24535 Davidia involucrata HOM05D003886 ORTHO05D004587 6.5e-83 312.0 193 79.8
Cc02_g36820 Coffea canephora HOM05D003886 ORTHO05D004587 1.1e-82 311.2 193 79.3
MSTRG.5179 Avicennia marina HOM05D003886 ORTHO05D004587 1.4e-82 310.8 193 79.8
CSS0008969 Camellia sinensis var. sinensis HOM05D003886 ORTHO05D004587 1.4e-82 310.8 193 80.3
Thhalv10007658m.g Eutrema salsugineum HOM05D003886 ORTHO05D004587 1.4e-82 310.8 195 77.4
Oeu000173.4 Olea europaea HOM05D003886 ORTHO05D004587 1.4e-82 310.8 193 78.2
Sp1g14830 Schrenkiella parvula HOM05D003886 ORTHO05D004587 1.9e-82 310.5 195 78.5
Carub.0001s1642 Capsella rubella HOM05D003886 ORTHO05D004587 3.2e-82 309.7 194 77.8
Actinidia17720 Actinidia chinensis HOM05D003886 ORTHO05D004587 4.2e-82 309.3 193 78.2
Duzib235G0758 Durio zibethinus HOM05D003886 ORTHO05D004587 4.2e-82 309.3 193 80.3
Rhsim11G0111800 Rhododendron simsii HOM05D003886 ORTHO05D004587 4.2e-82 309.3 193 78.2
Sc24g0001760 Simmondsia chinensis HOM05D003886 ORTHO05D004587 4.2e-82 309.3 193 79.3
Migut.N00997 Erythranthe guttata HOM05D003886 ORTHO05D004587 7.1e-82 308.5 193 79.8
BcaB02g07192 Brassica carinata HOM05D003886 ORTHO05D004587 1.2e-81 307.8 193 77.7
Cfa002157 Carpinus fangiana HOM05D003886 ORTHO05D004587 1.2e-81 307.8 194 77.8
Oeu010600.1 Olea europaea HOM05D003886 ORTHO05D004587 1.2e-81 307.8 193 78.2
MSTRG.27896 Avicennia marina HOM05D003886 ORTHO05D004587 1.6e-81 307.4 193 79.8
CSS0041623 Camellia sinensis var. sinensis HOM05D003886 ORTHO05D004587 2.1e-81 307.0 193 79.8
ECA246G0124 Erigeron canadensis HOM05D003886 ORTHO05D004587 2.1e-81 307.0 194 76.8
TWI12G0365 Tripterygium wilfordii HOM05D003886 ORTHO05D004587 2.1e-81 307.0 193 77.2
Glyma.19G049500 Glycine max HOM05D003886 ORTHO05D004587 3.5e-81 306.2 193 76.2
vmacro01641 Vaccinium macrocarpon HOM05D003886 ORTHO05D004587 4.6e-81 305.8 194 77.8
C02p36140 Brassica napus HOM05D003886 ORTHO05D004587 7.9e-81 305.1 197 77.2
TAR624G0406 Trochodendron aralioides HOM05D003886 ORTHO05D004587 7.9e-81 305.1 193 79.3
Actinidia11710 Actinidia chinensis HOM05D003886 ORTHO05D004587 1.3e-80 304.3 193 77.2
BcaC03g15859 Brassica carinata HOM05D003886 ORTHO05D004587 1.3e-80 304.3 197 76.6
Glyma.13G045600 Glycine max HOM05D003886 ORTHO05D004587 1.8e-80 303.9 193 76.2
Sed0016198 Sechium edule HOM05D003886 ORTHO05D004587 1.8e-80 303.9 193 76.2
TAR626G1553 Trochodendron aralioides HOM05D003886 ORTHO05D004587 1.8e-80 303.9 193 76.7
C06p30220 Brassica napus HOM05D003886 ORTHO05D004587 2.3e-80 303.5 197 77.7
BolC6t38185H Brassica oleracea HOM05D003886 ORTHO05D004587 2.3e-80 303.5 197 77.7
BcaC08g45391 Brassica carinata HOM05D003886 ORTHO05D004587 3.0e-80 303.1 197 77.2
Nn7g35782 Nelumbo nucifera HOM05D003886 ORTHO05D004587 3.9e-80 302.8 193 77.7
A02p22460 Brassica napus HOM05D003886 ORTHO05D004587 6.7e-80 302.0 195 76.9
QL05p085089 Quercus lobata HOM05D003886 ORTHO05D004587 8.7e-80 301.6 201 74.6
arahy.Tifrunner.gnm1.ann1.Z0Z3SY Arachis hypogaea HOM05D003886 ORTHO05D004587 1.1e-79 301.2 193 78.2
BcaC08g47466 Brassica carinata HOM05D003886 ORTHO05D004587 1.1e-79 301.2 194 77.3
C06p52890 Brassica napus HOM05D003886 ORTHO05D004587 1.1e-79 301.2 194 77.3
BolC6t40307H Brassica oleracea HOM05D003886 ORTHO05D004587 1.5e-79 300.8 194 76.8
Prupe.3G028400 Prunus persica HOM05D003886 ORTHO05D004587 1.9e-79 300.4 202 76.7
A07p44160 Brassica napus HOM05D003886 ORTHO05D004587 2.5e-79 300.1 194 76.8
BraA07t31924Z Brassica rapa HOM05D003886 ORTHO05D004587 2.5e-79 300.1 194 76.8
HanXRQChr17g0545561 Helianthus annuus HOM05D003886 ORTHO05D004587 3.3e-79 299.7 194 74.2
arahy.Tifrunner.gnm1.ann1.78GTJP Arachis hypogaea HOM05D003886 ORTHO05D004587 4.3e-79 299.3 193 77.7
AUR62011474 Chenopodium quinoa HOM05D003886 ORTHO05D004587 4.3e-79 299.3 193 77.7
BraA07t30377Z Brassica rapa HOM05D003886 ORTHO05D004587 5.7e-79 298.9 199 77.4
AUR62016582 Chenopodium quinoa HOM05D003886 ORTHO05D004587 7.4e-79 298.5 193 77.7
VMungo0464G1314 Vigna mungo HOM05D003886 ORTHO05D004587 1.6e-78 297.4 194 77.3
Lj2g0000910 Lotus japonicus HOM05D003886 ORTHO05D004587 2.8e-78 296.6 193 75.6
Ah.01g020350 Amaranthus hybridus HOM05D003886 ORTHO05D004587 4.8e-78 295.8 193 76.2
A07p27360 Brassica napus HOM05D003886 ORTHO05D004587 6.3e-78 295.4 199 76.4
MD09G1170200 Malus domestica HOM05D003886 ORTHO05D004587 6.3e-78 295.4 196 76.5
Phvul.004G065600 Phaseolus vulgaris HOM05D003886 ORTHO05D004587 6.3e-78 295.4 195 75.9
MD17G1156900 Malus domestica HOM05D003886 ORTHO05D004587 8.2e-78 295.0 196 77.0
CARHR017150 Cardamine hirsuta HOM05D003886 ORTHO05D004587 1.8e-77 293.9 196 75.0
Lalb_Chr21g0317801 Lupinus albus HOM05D003886 ORTHO05D004587 1.8e-77 293.9 194 76.3
Atru.chr3.1841 Acer truncatum HOM05D003886 ORTHO05D004587 2.4e-77 293.5 209 70.3
AT1G16690 Arabidopsis thaliana HOM05D003886 ORTHO05D004587 2.4e-77 293.5 198 73.2
EL10Ac9g21865 Beta vulgaris HOM05D003886 ORTHO05D004587 4.1e-77 292.7 193 75.1
BraA02t07251Z Brassica rapa HOM05D003886 ORTHO05D004587 4.1e-77 292.7 194 76.3
AL1G28850 Arabidopsis lyrata HOM05D003886 ORTHO05D004587 5.3e-77 292.4 197 75.1
CAN.G809.69 Capsicum annuum HOM05D003886 ORTHO05D004587 5.3e-77 292.4 193 71.5
PGR102G2920 Punica granatum HOM05D003886 ORTHO05D004587 5.3e-77 292.4 200 73.0
HanXRQChr17g0570801 Helianthus annuus HOM05D003886 ORTHO05D004587 9.0e-77 291.6 193 74.1
Solyc02g081650.3 Solanum lycopersicum HOM05D003886 ORTHO05D004587 2.0e-76 290.4 193 71.5
Sopen02g026260 Solanum pennellii HOM05D003886 ORTHO05D004587 2.0e-76 290.4 193 71.5
Solyc02g032300.3 Solanum lycopersicum HOM05D003886 ORTHO05D004587 2.6e-76 290.0 193 73.1
Psat7g057280 Pisum sativum HOM05D003886 ORTHO05D004587 3.4e-76 289.7 195 73.3
Sopen02g010650 Solanum pennellii HOM05D003886 ORTHO05D004587 4.5e-76 289.3 193 73.1
Eucgr.F04066 Eucalyptus grandis HOM05D003886 ORTHO05D004587 5.9e-76 288.9 202 71.3
PGSC0003DMG400017734 Solanum tuberosum HOM05D003886 ORTHO05D004587 5.9e-76 288.9 193 71.0
FAN09G1502 Fragaria x ananassa HOM05D003886 ORTHO05D004587 7.7e-76 288.5 197 73.1
Nitab4.5_0006794g0050 Nicotiana tabacum HOM05D003886 ORTHO05D004587 7.7e-76 288.5 193 71.5
Nitab4.5_0013482g0010 Nicotiana tabacum HOM05D003886 ORTHO05D004587 7.7e-76 288.5 193 71.5
Ca_17750_v3 Cicer arietinum L. HOM05D003886 ORTHO05D004587 1.0e-75 288.1 195 72.8
Nitab4.5_0000389g0130 Nicotiana tabacum HOM05D003886 ORTHO05D004587 1.0e-75 288.1 193 72.5
Medtr8g090035 Medicago truncatula HOM05D003886 ORTHO05D004587 1.3e-75 287.7 195 72.8
PGSC0003DMG400013092 Solanum tuberosum HOM05D003886 ORTHO05D004587 1.3e-75 287.7 193 72.0
FAN05G1128 Fragaria x ananassa HOM05D003886 ORTHO05D004587 1.7e-75 287.3 197 73.1
TPR.G6290 Trifolium pratense HOM05D003886 ORTHO05D004587 2.2e-75 287.0 195 72.8
ECA234G0089 Erigeron canadensis HOM05D003886 ORTHO05D004587 3.8e-75 286.2 193 71.0
Lalb_Chr06g0174541 Lupinus albus HOM05D003886 ORTHO05D004587 1.1e-74 284.6 194 74.7
Peaxi162Scf00048g01418 Petunia axillaris HOM05D003886 ORTHO05D004587 1.1e-74 284.6 193 71.5
CANSAT01G1565 Cannabis sativa HOM05D003886 ORTHO05D004587 1.9e-74 283.9 202 71.3
FAN14G1097 Fragaria x ananassa HOM05D003886 ORTHO05D004587 2.5e-74 283.5 197 72.6
FAN14G2559 Fragaria x ananassa HOM05D003886 ORTHO05D004587 2.5e-74 283.5 197 72.6
Lalb_Chr04g0257491 Lupinus albus HOM05D003886 ORTHO05D004587 2.5e-74 283.5 193 71.5
RcHm_v2.0_Chr2g0148321 Rosa chinensis HOM05D003886 ORTHO05D004587 3.2e-74 283.1 199 69.8
Peaxi162Scf00198g01528 Petunia axillaris HOM05D003886 ORTHO05D004587 7.2e-74 282.0 193 69.9
FvH4_6g36310 Fragaria vesca HOM05D003886 ORTHO05D004587 4.6e-73 279.3 197 72.1
HPP92_015734 Vanilla planifolia HOM05D003886 ORTHO05D004587 1.0e-72 278.1 195 69.7
Sabra14G0003200 Salix brachista HOM05D003886 ORTHO05D004587 1.5e-71 274.2 215 68.8
Ciclev10020009m.g Citrus clementina HOM05D003886 ORTHO05D004587 2.0e-71 273.9 212 66.5
PSO063G1610 Papaver somniferum HOM05D003886 ORTHO05D004587 2.2e-70 270.4 193 71.5
Aqoxy6G00358 Aquilegia oxysepala HOM05D003886 ORTHO05D004587 2.8e-70 270.0 197 68.5
CDE03G0037 Ceratophyllum demersum HOM05D003886 ORTHO05D004587 2.8e-70 270.0 193 69.9
PSO782G4625 Papaver somniferum HOM05D003886 ORTHO05D004587 1.1e-69 268.1 193 71.0
Potri.014G000600 Populus trichocarpa HOM05D003886 ORTHO05D004587 1.1e-69 268.1 216 66.2
ATR0626G209 Amborella trichopoda HOM05D003886 ORTHO05D004587 5.3e-69 265.8 192 67.7
ECA228G0002 Erigeron canadensis HOM05D003886 ORTHO05D004587 1.2e-68 264.6 194 69.1
CDE02G1355 Ceratophyllum demersum HOM05D003886 ORTHO05D004587 4.5e-68 262.7 190 66.3
Os08g0338900 Oryza sativa ssp. japonica HOM05D003886 ORTHO05D004587 3.8e-67 259.6 195 65.6
CDE05G0598 Ceratophyllum demersum HOM05D003886 ORTHO05D004587 6.5e-67 258.8 193 65.8
Os09g0284600 Oryza sativa ssp. japonica HOM05D003886 ORTHO05D004587 1.4e-66 257.7 203 63.1
Zm00001eb308950 Zea mays HOM05D003886 ORTHO05D004587 4.2e-66 256.1 205 63.9
MBI14_g11787_MAGBIO Magnolia biondii HOM05D003886 ORTHO05D004587 7.9e-65 251.9 161 73.3
DCAR_022329 Daucus carota HOM05D003886 ORTHO05D004587 5.1e-64 249.2 197 67.0
Oeu061917.1 Olea europaea HOM05D003886 ORTHO05D004587 6.7e-64 248.8 266 53.0
SHI31130 Sapria himalayana HOM05D003886 ORTHO05D004587 3.3e-63 246.5 219 59.8
unitig_699.g19834 Utricularia gibba HOM05D003886 ORTHO05D004587 7.4e-63 245.4 171 73.1
Lsat_1_v5_gn_3_52161 Lactuca sativa HOM05D003886 ORTHO05D004587 5.3e-61 239.2 154 75.3
Lj5C312G11 Lonicera japonica HOM05D003886 ORTHO05D004587 8.5e-59 231.9 164 68.9
AagrBONN_evm.TU.Sc2ySwM_228.1694 Anthoceros agrestis HOM05D003886 ORTHO05D004587 2.8e-54 216.9 195 55.9
ClCG03G018040 Citrullus lanatus HOM05D003886 ORTHO05D004587 1.4e-53 214.5 130 80.8
Mapoly0014s0003 Marchantia polymorpha HOM05D003886 ORTHO05D004587 3.1e-53 213.4 196 54.6
SEGI_16863 Sequoiadendron giganteum HOM05D003886 ORTHO05D004587 2.0e-52 210.7 171 59.6
Ah.14g084510 Amaranthus hybridus HOM05D003886 ORTHO05D004587 8.5e-51 205.3 170 61.8
Pp3c23_7050 Physcomitrium patens HOM05D003886 ORTHO05D004587 1.2e-49 201.4 195 52.3
CDE06G2124 Ceratophyllum demersum HOM05D003886 ORTHO05D004587 2.1e-49 200.7 134 69.4
SMO367G1242 Selaginella moellendorffii HOM05D003886 ORTHO05D004587 3.6e-49 199.9 203 54.2
ATR0751G177 Amborella trichopoda HOM05D003886 ORTHO05D004587 2.0e-47 194.1 135 68.1
Pp3c16_8390 Physcomitrium patens HOM05D003886 ORTHO05D004587 5.2e-40 169.5 201 44.3
CBR_g38268 Chara braunii HOM05D003886 ORTHO05D004587 9.8e-39 165.2 200 45.5
SGA_v2.0_scaffold8G04472 Striga asiatica HOM05D003886 ORTHO05D004587 8.3e-38 162.2 234 46.2
Aqoxy6G02601 Aquilegia oxysepala HOM05D003886 ORTHO05D004587 9.5e-34 148.7 156 51.9
BolC2t09627H Brassica oleracea HOM05D003886 ORTHO05D004587 2.9e-30 137.1 85 76.5
Haze_16250 Corylus avellana HOM05D003886 ORTHO05D004587 3.7e-30 136.7 79 79.7
MBI11_g15900_MAGBIO Magnolia biondii HOM05D003886 ORTHO05D004587 1.6e-28 131.3 87 70.1
BcaB05g25166 Brassica carinata HOM05D000912 ORTHO05D001232 8.9e-24 115.5 74 77.0
BcaB05g25167 Brassica carinata HOM05D003886 ORTHO05D004587 1.1e-21 108.6 64 81.2
HanXRQChr08g0234351 Helianthus annuus HOM05D003886 ORTHO05D004587 1.7e-19 101.3 70 70.0
MCO08G116 Micromonas commoda HOM05D003886 ORTHO05D004587 1.7e-19 101.3 215 35.3
PRCOL_00004606 Prasinoderma coloniale HOM05D003886 ORTHO05D004587 5.0e-19 99.8 198 33.3
Cre03.g196400 Chlamydomonas reinhardtii HOM05D003886 ORTHO05D004587 1.5e-18 98.2 202 34.7
ATR0751G140 Amborella trichopoda HOM05D003886 ORTHO05D004587 2.8e-17 94.0 64 68.8
Ciclev10021199m.g Citrus clementina HOM05D003886 ORTHO05D004587 2.6e-15 87.4 60 70.0
Gohir.A07G077000 Gossypium hirsutum HOM05D003886 ORTHO05D004587 1.3e-14 85.1 52 78.8
ClCG03G018030 Citrullus lanatus HOM05D003886 ORTHO05D004587 7.1e-13 79.3 77 55.8
Lj5C312T17 Lonicera japonica HOM05D001538 ORTHO05D004587 1.2e-12 78.6 63 69.8
SHI26090 Sapria himalayana HOM05D005069 ORTHO05D006024 3.3e-10 70.5 63 57.1
CAN.G1600.1 Capsicum annuum HOM05D003886 ORTHO05D004587 7.3e-10 69.3 53 67.9


User provided reference genes

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