Interactive Phylogenetics Module

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If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cpa.g.sc10.19 Carica papaya HOM05D003886 ORTHO05D004587 7.0e-110 400.6 198 100.0
Gohir.D10G001000 Gossypium hirsutum HOM05D003886 ORTHO05D004587 2.9e-79 298.9 184 81.0
Gorai.011G001300 Gossypium raimondii HOM05D003886 ORTHO05D004587 2.9e-79 298.9 184 81.0
Gohir.A10G000800 Gossypium hirsutum HOM05D003886 ORTHO05D004587 5.4e-78 294.7 184 80.4
QL05p085089 Quercus lobata HOM05D003886 ORTHO05D004587 5.4e-78 294.7 185 77.8
Prupe.3G028400 Prunus persica HOM05D003886 ORTHO05D004587 9.3e-78 293.9 184 79.9
Duzib235G0758 Durio zibethinus HOM05D003886 ORTHO05D004587 2.1e-77 292.7 184 80.4
Thecc.06G049000 Theobroma cacao HOM05D003886 ORTHO05D004587 2.1e-77 292.7 185 80.5
TWI75G0340 Tripterygium wilfordii HOM05D003886 ORTHO05D004587 3.0e-76 288.9 185 77.8
Cfa002157 Carpinus fangiana HOM05D003886 ORTHO05D004587 2.5e-75 285.8 186 76.9
Potri.014G000600 Populus trichocarpa HOM05D003886 ORTHO05D004587 7.3e-75 284.3 185 78.9
TWI12G0365 Tripterygium wilfordii HOM05D003886 ORTHO05D004587 7.3e-75 284.3 182 78.0
MD09G1170200 Malus domestica HOM05D003886 ORTHO05D004587 9.6e-75 283.9 184 77.2
Atru.chr3.1841 Acer truncatum HOM05D003886 ORTHO05D004587 1.8e-73 279.6 184 76.1
MD17G1156900 Malus domestica HOM05D003886 ORTHO05D004587 3.1e-73 278.9 184 75.0
Sabra14G0003200 Salix brachista HOM05D003886 ORTHO05D004587 3.1e-73 278.9 185 77.3
Dinv24535 Davidia involucrata HOM05D003886 ORTHO05D004587 1.5e-72 276.6 184 75.0
Duzib192G0492 Durio zibethinus HOM05D003886 ORTHO05D004587 2.6e-72 275.8 184 76.1
CiPaw.01G092000 Carya illinoinensis HOM05D003886 ORTHO05D004587 1.7e-71 273.1 185 75.7
Dinv30973 Davidia involucrata HOM05D003886 ORTHO05D004587 4.9e-71 271.6 184 75.0
FAN09G1502 Fragaria x ananassa HOM05D003886 ORTHO05D004587 8.4e-71 270.8 184 75.5
FAN05G1128 Fragaria x ananassa HOM05D003886 ORTHO05D004587 1.1e-70 270.4 184 75.5
FvH4_6g36310 Fragaria vesca HOM05D003886 ORTHO05D004587 9.3e-70 267.3 184 75.0
FAN14G1097 Fragaria x ananassa HOM05D003886 ORTHO05D004587 1.2e-69 266.9 184 75.0
Actinidia17720 Actinidia chinensis HOM05D003886 ORTHO05D004587 2.1e-69 266.2 184 74.5
Manes.15G112100 Manihot esculenta HOM05D003886 ORTHO05D004587 2.7e-69 265.8 184 74.5
FAN14G2559 Fragaria x ananassa HOM05D003886 ORTHO05D004587 7.9e-69 264.2 184 74.5
Ciclev10020009m.g Citrus clementina HOM05D003886 ORTHO05D004587 1.3e-68 263.5 184 73.4
Manes.03G095300 Manihot esculenta HOM05D003886 ORTHO05D004587 1.8e-68 263.1 185 74.1
Ciclev10021199m.g Citrus clementina HOM05D003886 ORTHO05D004587 3.0e-68 262.3 184 72.8
Aa31LG4G1970 Aethionema arabicum HOM05D003886 ORTHO05D004587 5.1e-68 261.5 190 68.4
RcHm_v2.0_Chr2g0148321 Rosa chinensis HOM05D003886 ORTHO05D004587 8.7e-68 260.8 184 74.5
BolC6t40307H Brassica oleracea HOM05D003886 ORTHO05D004587 5.6e-67 258.1 186 68.8
Sp5g34070 Schrenkiella parvula HOM05D003886 ORTHO05D004587 5.6e-67 258.1 186 69.9
BcaC08g47466 Brassica carinata HOM05D003886 ORTHO05D004587 1.3e-66 256.9 186 68.3
THA.LOC104808112 Tarenaya hassleriana HOM05D003886 ORTHO05D004587 2.8e-66 255.8 185 70.3
Haze_16249 Corylus avellana HOM05D003886 ORTHO05D004587 6.2e-66 254.6 239 59.4
Thhalv10018536m.g Eutrema salsugineum HOM05D003886 ORTHO05D004587 6.2e-66 254.6 187 70.6
BraA07t31924Z Brassica rapa HOM05D003886 ORTHO05D004587 8.1e-66 254.2 186 67.2
AL2G39480 Arabidopsis lyrata HOM05D003886 ORTHO05D004587 1.4e-65 253.4 186 68.3
GSVIVG01000280001 Vitis vinifera HOM05D003886 ORTHO05D004587 1.8e-65 253.1 185 70.8
A07p44160 Brassica napus HOM05D003886 ORTHO05D004587 4.0e-65 251.9 186 66.1
C06p52890 Brassica napus HOM05D003886 ORTHO05D004587 6.9e-65 251.1 187 67.9
CANSAT01G1565 Cannabis sativa HOM05D003886 ORTHO05D004587 1.5e-64 250.0 185 69.7
BcaB02g07192 Brassica carinata HOM05D003886 ORTHO05D004587 3.4e-64 248.8 187 66.3
AT1G79020 Arabidopsis thaliana HOM05D003886 ORTHO05D004587 4.5e-64 248.4 186 67.7
Carub.0002s2589 Capsella rubella HOM05D003886 ORTHO05D004587 7.6e-64 247.7 186 67.2
Migut.N00997 Erythranthe guttata HOM05D003886 ORTHO05D004587 7.6e-64 247.7 185 69.2
Lj2g0000910 Lotus japonicus HOM05D003886 ORTHO05D004587 1.7e-63 246.5 186 68.3
TAR624G0406 Trochodendron aralioides HOM05D003886 ORTHO05D004587 2.9e-63 245.7 185 65.9
BcaC08g45391 Brassica carinata HOM05D003886 ORTHO05D004587 4.9e-63 245.0 187 64.7
C06p30220 Brassica napus HOM05D003886 ORTHO05D004587 4.9e-63 245.0 187 64.7
BolC6t38185H Brassica oleracea HOM05D003886 ORTHO05D004587 4.9e-63 245.0 187 64.7
BraA07t30377Z Brassica rapa HOM05D003886 ORTHO05D004587 1.4e-62 243.4 187 64.7
CSS0041623 Camellia sinensis var. sinensis HOM05D003886 ORTHO05D004587 1.9e-62 243.0 193 66.8
Nn7g35782 Nelumbo nucifera HOM05D003886 ORTHO05D004587 1.9e-62 243.0 185 65.9
vmacro01641 Vaccinium macrocarpon HOM05D003886 ORTHO05D004587 1.9e-62 243.0 184 70.1
MBI14_g11787_MAGBIO Magnolia biondii HOM05D003886 ORTHO05D004587 4.2e-62 241.9 187 63.6
CSS0008969 Camellia sinensis var. sinensis HOM05D003886 ORTHO05D004587 9.3e-62 240.7 184 67.9
MSTRG.27896 Avicennia marina HOM05D003886 ORTHO05D004587 2.7e-61 239.2 183 68.3
Rhsim11G0111800 Rhododendron simsii HOM05D003886 ORTHO05D004587 4.6e-61 238.4 184 69.6
Thhalv10007658m.g Eutrema salsugineum HOM05D003886 ORTHO05D004587 1.3e-60 236.9 185 69.2
Carub.0001s1642 Capsella rubella HOM05D003886 ORTHO05D004587 2.3e-60 236.1 185 69.7
Ca_17750_v3 Cicer arietinum L. HOM05D003886 ORTHO05D004587 2.3e-60 236.1 186 66.1
Glyma.19G049500 Glycine max HOM05D003886 ORTHO05D004587 3.0e-60 235.7 186 64.0
Sed0016198 Sechium edule HOM05D003886 ORTHO05D004587 3.9e-60 235.3 185 68.6
Actinidia11710 Actinidia chinensis HOM05D003886 ORTHO05D004587 6.7e-60 234.6 179 69.8
Lalb_Chr21g0317801 Lupinus albus HOM05D003886 ORTHO05D004587 6.7e-60 234.6 186 65.1
Eucgr.F04066 Eucalyptus grandis HOM05D003886 ORTHO05D004587 1.1e-59 233.8 184 63.6
Sp1g14830 Schrenkiella parvula HOM05D003886 ORTHO05D004587 1.1e-59 233.8 186 67.7
CARHR017150 Cardamine hirsuta HOM05D003886 ORTHO05D004587 1.5e-59 233.4 186 66.7
COL.COLO4_26802 Corchorus olitorius HOM05D003886 ORTHO05D004587 2.5e-59 232.6 184 66.3
CsaV3_1G038140 Cucumis sativus L. HOM05D003886 ORTHO05D004587 2.5e-59 232.6 185 65.4
VMungo0464G1314 Vigna mungo HOM05D003886 ORTHO05D004587 3.3e-59 232.3 186 64.5
MELO3C015232.2 Cucumis melo HOM05D003886 ORTHO05D004587 7.4e-59 231.1 185 65.4
A07p27360 Brassica napus HOM05D003886 ORTHO05D004587 9.6e-59 230.7 185 63.2
AL1G28850 Arabidopsis lyrata HOM05D003886 ORTHO05D004587 1.3e-58 230.3 185 67.6
AT1G16690 Arabidopsis thaliana HOM05D003886 ORTHO05D004587 1.3e-58 230.3 185 67.6
MSTRG.5179 Avicennia marina HOM05D003886 ORTHO05D004587 1.3e-58 230.3 180 67.2
Cc02_g36820 Coffea canephora HOM05D003886 ORTHO05D004587 1.3e-58 230.3 187 66.3
Glyma.13G045600 Glycine max HOM05D003886 ORTHO05D004587 2.8e-58 229.2 186 61.8
Phvul.004G065600 Phaseolus vulgaris HOM05D003886 ORTHO05D004587 2.8e-58 229.2 185 64.3
BraA02t07251Z Brassica rapa HOM05D003886 ORTHO05D004587 1.1e-57 227.3 187 65.2
A02p22460 Brassica napus HOM05D003886 ORTHO05D004587 1.8e-57 226.5 187 64.7
Peaxi162Scf00048g01418 Petunia axillaris HOM05D003886 ORTHO05D004587 1.8e-57 226.5 183 65.0
TAR626G1553 Trochodendron aralioides HOM05D003886 ORTHO05D004587 1.8e-57 226.5 185 61.1
DCAR_022329 Daucus carota HOM05D003886 ORTHO05D004587 3.1e-57 225.7 186 66.7
EL10Ac9g21865 Beta vulgaris HOM05D003886 ORTHO05D004587 6.9e-57 224.6 184 63.6
ClCG03G018020 Citrullus lanatus HOM05D003886 ORTHO05D004587 3.4e-56 222.2 193 63.2
AUR62016582 Chenopodium quinoa HOM05D003886 ORTHO05D004587 5.9e-56 221.5 184 64.1
PGR102G2920 Punica granatum HOM05D003886 ORTHO05D004587 1.0e-55 220.7 189 64.0
C02p36140 Brassica napus HOM05D003886 ORTHO05D004587 1.3e-55 220.3 187 64.2
BolC2t09627H Brassica oleracea HOM05D003886 ORTHO05D004587 1.3e-55 220.3 187 63.6
unitig_699.g19834 Utricularia gibba HOM05D003886 ORTHO05D004587 1.7e-55 219.9 185 64.9
Solyc02g032300.3 Solanum lycopersicum HOM05D003886 ORTHO05D004587 2.9e-55 219.2 186 64.0
Sopen02g010650 Solanum pennellii HOM05D003886 ORTHO05D004587 2.9e-55 219.2 186 64.0
AUR62011474 Chenopodium quinoa HOM05D003886 ORTHO05D004587 3.8e-55 218.8 190 62.1
Medtr8g090035 Medicago truncatula HOM05D003886 ORTHO05D004587 5.0e-55 218.4 186 63.4
Lalb_Chr06g0174541 Lupinus albus HOM05D003886 ORTHO05D004587 6.5e-55 218.0 186 64.0
BcaC03g15859 Brassica carinata HOM05D003886 ORTHO05D004587 8.4e-55 217.6 187 63.6
Oeu000173.4 Olea europaea HOM05D003886 ORTHO05D004587 1.1e-54 217.2 265 48.7
Psat7g057280 Pisum sativum HOM05D003886 ORTHO05D004587 1.9e-54 216.5 187 63.1
Lj5C312G11 Lonicera japonica HOM05D003886 ORTHO05D004587 2.5e-54 216.1 201 62.7
CAN.G809.69 Capsicum annuum HOM05D003886 ORTHO05D004587 7.2e-54 214.5 183 63.4
SGA_v2.0_scaffold8G04472 Striga asiatica HOM05D003886 ORTHO05D004587 2.7e-53 212.6 196 62.2
Lalb_Chr04g0257491 Lupinus albus HOM05D003886 ORTHO05D004587 1.0e-52 210.7 185 57.8
Ah.01g020350 Amaranthus hybridus HOM05D003886 ORTHO05D004587 2.3e-52 209.5 184 62.0
Oeu061917.1 Olea europaea HOM05D003886 ORTHO05D004587 2.3e-52 209.5 186 60.8
Peaxi162Scf00198g01528 Petunia axillaris HOM05D003886 ORTHO05D004587 5.1e-52 208.4 186 61.8
Solyc02g081650.3 Solanum lycopersicum HOM05D003886 ORTHO05D004587 3.3e-51 205.7 183 60.7
PGSC0003DMG400017734 Solanum tuberosum HOM05D003886 ORTHO05D004587 4.3e-51 205.3 183 60.7
HanXRQChr17g0545561 Helianthus annuus HOM05D003886 ORTHO05D004587 7.4e-51 204.5 185 63.2
Sopen02g026260 Solanum pennellii HOM05D003886 ORTHO05D004587 9.7e-51 204.1 183 60.1
arahy.Tifrunner.gnm1.ann1.Z0Z3SY Arachis hypogaea HOM05D003886 ORTHO05D004587 1.6e-50 203.4 219 53.0
HanXRQChr17g0570801 Helianthus annuus HOM05D003886 ORTHO05D004587 2.8e-50 202.6 184 60.3
PSO782G4625 Papaver somniferum HOM05D003886 ORTHO05D004587 1.1e-49 200.7 188 60.1
Lsat_1_v5_gn_3_52161 Lactuca sativa HOM05D003886 ORTHO05D004587 2.4e-49 199.5 190 60.5
PSO063G1610 Papaver somniferum HOM05D003886 ORTHO05D004587 9.0e-49 197.6 188 59.0
ECA234G0089 Erigeron canadensis HOM05D003886 ORTHO05D004587 1.2e-48 197.2 184 57.1
Sc24g0001760 Simmondsia chinensis HOM05D003886 ORTHO05D004587 3.4e-48 195.7 183 61.2
TPR.G6290 Trifolium pratense HOM05D003886 ORTHO05D004587 4.5e-48 195.3 171 62.0
Zm00001eb097400 Zea mays HOM05D003886 ORTHO05D004587 1.7e-47 193.4 187 52.4
Nitab4.5_0006794g0050 Nicotiana tabacum HOM05D003886 ORTHO05D004587 2.9e-47 192.6 183 60.7
HPP92_015734 Vanilla planifolia HOM05D003886 ORTHO05D004587 5.0e-47 191.8 185 55.1
Oeu010600.1 Olea europaea HOM05D003886 ORTHO05D004587 1.4e-46 190.3 183 55.2
Nitab4.5_0013482g0010 Nicotiana tabacum HOM05D003886 ORTHO05D004587 5.5e-46 188.3 183 59.0
Zm00001eb308950 Zea mays HOM05D003886 ORTHO05D004587 1.6e-45 186.8 187 52.4
Os08g0338900 Oryza sativa ssp. japonica HOM05D003886 ORTHO05D004587 8.8e-44 181.0 192 49.0
CAN.G1586.1 Capsicum annuum HOM05D003886 ORTHO05D004587 1.8e-41 173.3 186 54.3
ATR0626G209 Amborella trichopoda HOM05D003886 ORTHO05D004587 4.1e-41 172.2 183 54.6
CDE02G1355 Ceratophyllum demersum HOM05D003886 ORTHO05D004587 2.1e-37 159.8 182 47.8
CDE06G2124 Ceratophyllum demersum HOM05D003886 ORTHO05D004587 2.1e-37 159.8 184 50.0
SHI31130 Sapria himalayana HOM05D003886 ORTHO05D004587 7.9e-37 157.9 184 48.9
Nitab4.5_0000389g0110 Nicotiana tabacum HOM05D003886 ORTHO05D004587 2.2e-34 149.8 148 52.7
CDE03G0037 Ceratophyllum demersum HOM05D003886 ORTHO05D004587 2.8e-34 149.4 183 49.2
ATR0751G140 Amborella trichopoda HOM05D003886 ORTHO05D004587 3.7e-34 149.1 186 48.9
Aqoxy6G00358 Aquilegia oxysepala HOM05D003886 ORTHO05D004587 5.3e-33 145.2 187 47.6
CDE05G0598 Ceratophyllum demersum HOM05D003886 ORTHO05D004587 1.5e-30 137.1 166 44.6
Nn8g38501 Nelumbo nucifera HOM05D003886 ORTHO05D004587 2.5e-30 136.3 111 64.0
Mapoly0014s0003 Marchantia polymorpha HOM05D003886 ORTHO05D004587 6.3e-26 121.7 202 39.1
AagrBONN_evm.TU.Sc2ySwM_228.1694 Anthoceros agrestis HOM05D003886 ORTHO05D004587 3.5e-24 115.9 198 38.4
arahy.Tifrunner.gnm1.ann1.RANL81 Arachis hypogaea HOM05D003886 ORTHO05D004587 7.7e-24 114.8 129 51.2
SMO367G1242 Selaginella moellendorffii HOM05D003886 ORTHO05D004587 7.7e-24 114.8 189 37.6
arahy.Tifrunner.gnm1.ann1.F9GSXH Arachis hypogaea HOM05D003886 ORTHO05D019782 2.2e-23 113.2 114 56.1
arahy.Tifrunner.gnm1.ann1.6KK5MR Arachis hypogaea HOM05D003886 ORTHO05D004587 1.6e-21 107.1 104 58.7
Pp3c23_7050 Physcomitrium patens HOM05D003886 ORTHO05D004587 5.2e-20 102.1 204 35.3
ECA246G0124 Erigeron canadensis HOM05D003886 ORTHO05D004587 1.8e-17 93.6 159 41.5
SEGI_11104 Sequoiadendron giganteum HOM05D003886 ORTHO05D004587 9.1e-17 91.3 170 34.7
arahy.Tifrunner.gnm1.ann1.K7FQ1R Arachis hypogaea HOM05D003886 ORTHO05D019782 1.7e-15 87.0 107 51.4
Dinv30975 Davidia involucrata HOM05D000190 ORTHO05D000113 1.2e-13 80.9 59 67.8
Ah.14g084510 Amaranthus hybridus HOM05D003886 ORTHO05D004587 4.7e-13 79.0 59 66.1
Pp3c16_8390 Physcomitrium patens HOM05D003886 ORTHO05D004587 2.0e-11 73.6 191 31.9
arahy.Tifrunner.gnm1.ann1.EDPG13 Arachis hypogaea HOM05D003961 ORTHO05D038865 1.8e-09 67.0 113 40.7
CBR_g38268 Chara braunii HOM05D003886 ORTHO05D004587 2.3e-07 60.1 60 51.7
arahy.Tifrunner.gnm1.ann1.78GTJP Arachis hypogaea HOM05D003886 ORTHO05D004587 2.9e-07 59.7 40 72.5


User provided reference genes

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