Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cpa.g.sc10.136 Carica papaya HOM05D008870 ORTHO05D010906 3.0e-66 255.0 124 100.0
Cpa.g.sc42.37 Carica papaya HOM05D008870 ORTHO05D010906 2.8e-56 221.9 124 91.1
Cpa.g.sc13.22 Carica papaya HOM05D000911 ORTHO05D010906 2.2e-48 195.7 112 86.6
Cpa.g.sc24.62 Carica papaya HOM05D008870 ORTHO05D010906 5.5e-12 74.7 57 66.7
Cpa.g.sc56.5 Carica papaya HOM05D008870 ORTHO05D010906 1.0e-10 70.5 53 66.0
Cpa.g.sc309.3 Carica papaya HOM05D001083 ORTHO05D006562 1.8e-10 69.7 54 64.8
Cpa.g.sc9.44 Carica papaya HOM05D008870 ORTHO05D010906 1.8e-10 69.7 54 63.0
Cpa.g.sc2.80 Carica papaya HOM05D008870 ORTHO05D010906 4.0e-10 68.6 57 61.4
PGR119G0234 Punica granatum HOM05D000911 ORTHO05D000890 8.8e-10 67.4 69 56.5
Cpa.g.sc209.39 Carica papaya HOM05D004670 ORTHO05D022223 1.2e-09 67.0 43 72.1
Ca_19238_v3 Cicer arietinum L. HOM05D000911 ORTHO05D000890 1.5e-09 66.6 60 58.3
TPR.G29305 Trifolium pratense HOM05D000911 ORTHO05D000890 1.5e-09 66.6 49 67.3
CANSAT54G1286 Cannabis sativa HOM05D000911 ORTHO05D000890 2.0e-09 66.2 60 56.7
Manes.04G026500 Manihot esculenta HOM05D000911 ORTHO05D000890 2.0e-09 66.2 60 58.3
CSS0037153 Camellia sinensis var. sinensis HOM05D000911 ORTHO05D000890 2.6e-09 65.9 60 58.3
Cpa.g.sc12.244 Carica papaya HOM05D008870 ORTHO05D010906 4.4e-09 65.1 57 54.4
FvH4_3g33680 Fragaria vesca HOM05D000911 ORTHO05D000890 4.4e-09 65.1 60 55.0
FAN11G3651 Fragaria x ananassa HOM05D000911 ORTHO05D000890 4.4e-09 65.1 60 55.0
FAN21G3400 Fragaria x ananassa HOM05D000911 ORTHO05D000890 4.4e-09 65.1 60 55.0
FAN25G1422 Fragaria x ananassa HOM05D000911 ORTHO05D000890 4.4e-09 65.1 60 55.0
Prupe.6G092500 Prunus persica HOM05D000911 ORTHO05D000890 4.4e-09 65.1 60 58.3
Cpa.g.c34684 Carica papaya HOM05D000911 ORTHO05D000890 5.7e-09 64.7 64 54.7
Cpa.g.sc146.57 Carica papaya HOM05D000617 ORTHO05D010906 5.7e-09 64.7 44 70.5
Psat7g222120 Pisum sativum HOM05D000911 ORTHO05D000890 5.7e-09 64.7 60 56.7
MD03G1109900 Malus domestica HOM05D000911 ORTHO05D000890 7.5e-09 64.3 67 53.7
Cpa.g.sc35.62 Carica papaya HOM05D004670 ORTHO05D022223 9.8e-09 63.9 83 42.2
Medtr4g061070 Medicago truncatula HOM05D000911 ORTHO05D000890 9.8e-09 63.9 60 55.0
CSS0007556 Camellia sinensis var. sinensis HOM05D000911 ORTHO05D000890 1.3e-08 63.5 59 57.6
CiPaw.13G105800 Carya illinoinensis HOM05D000911 ORTHO05D000890 1.3e-08 63.5 48 62.5
Migut.D02175 Erythranthe guttata HOM05D000911 ORTHO05D000890 1.3e-08 63.5 60 53.3
Nitab4.5_0000533g0140 Nicotiana tabacum HOM05D000911 ORTHO05D000890 1.3e-08 63.5 65 52.3
Lalb_Chr19g0137471 Lupinus albus HOM05D000911 ORTHO05D000890 1.7e-08 63.2 60 55.0
Potri.008G195500 Populus trichocarpa HOM05D000911 ORTHO05D000890 1.7e-08 63.2 60 55.0
Actinidia03753 Actinidia chinensis HOM05D000911 ORTHO05D000890 2.2e-08 62.8 74 48.6
Cpa.g.sc40.12 Carica papaya HOM05D004670 ORTHO05D022223 2.2e-08 62.8 43 67.4
TAR636G1176 Trochodendron aralioides HOM05D000911 ORTHO05D000890 2.8e-08 62.4 60 56.7
Lj3g0015432 Lotus japonicus HOM05D000911 ORTHO05D000890 3.7e-08 62.0 83 45.8
SGA_v2.0_scaffold316G48428 Striga asiatica HOM05D000911 ORTHO05D000890 3.7e-08 62.0 60 55.0
Glyma.11G151288 Glycine max HOM05D000911 ORTHO05D000890 4.9e-08 61.6 60 53.3
unitig_37.g12681 Utricularia gibba HOM05D000911 ORTHO05D002648 4.9e-08 61.6 60 55.0
Cfa011376 Carpinus fangiana HOM05D000911 ORTHO05D000890 6.3e-08 61.2 60 55.0
Ciclev10028573m.g Citrus clementina HOM05D000911 ORTHO05D000890 6.3e-08 61.2 48 62.5
Haze_23942 Corylus avellana HOM05D000911 ORTHO05D000890 6.3e-08 61.2 60 56.7
Glyma.12G072500 Glycine max HOM05D000911 ORTHO05D000890 6.3e-08 61.2 60 53.3
PGSC0003DMG400025374 Solanum tuberosum HOM05D000911 ORTHO05D000890 6.3e-08 61.2 64 50.0
TWI75G1619 Tripterygium wilfordii HOM05D000911 ORTHO05D000890 6.3e-08 61.2 49 61.2
Cc01_g11680 Coffea canephora HOM05D000911 ORTHO05D000890 8.3e-08 60.8 60 53.3
Duzib168G1178 Durio zibethinus HOM05D000911 ORTHO05D000890 8.3e-08 60.8 60 53.3
Eucgr.J00958 Eucalyptus grandis HOM05D000911 ORTHO05D000890 8.3e-08 60.8 49 61.2
Hma1.2p1_2156F.1_g315420 Hydrangea macrophylla HOM05D000911 ORTHO05D000890 8.3e-08 60.8 60 55.0
MD11G1123300 Malus domestica HOM05D000911 ORTHO05D000890 8.3e-08 60.8 70 52.9
SalBow7G2265 Salvia bowleyana HOM05D000911 ORTHO05D000890 8.3e-08 60.8 60 53.3
vmacro14478 Vaccinium macrocarpon HOM05D000911 ORTHO05D000890 8.3e-08 60.8 60 53.3
Aqoxy2G01239 Aquilegia oxysepala HOM05D000911 ORTHO05D000890 1.1e-07 60.5 63 50.8
AL3G18990 Arabidopsis lyrata HOM05D000911 ORTHO05D000890 1.1e-07 60.5 60 50.0
AT3G07630 Arabidopsis thaliana HOM05D000911 ORTHO05D000890 1.1e-07 60.5 60 50.0
MSTRG.18632 Avicennia marina HOM05D000911 ORTHO05D000890 1.1e-07 60.5 60 55.0
Cpa.g.sc9.320 Carica papaya HOM05D008870 ORTHO05D010906 1.1e-07 60.5 57 50.9
AUR62025034 Chenopodium quinoa HOM05D000911 ORTHO05D000890 1.1e-07 60.5 73 50.7
COL.COLO4_25262 Corchorus olitorius HOM05D000911 ORTHO05D000890 1.1e-07 60.5 48 60.4
Solyc11g072520.3 Solanum lycopersicum HOM05D000911 ORTHO05D000890 1.1e-07 60.5 64 50.0
Sopen11g030170 Solanum pennellii HOM05D000911 ORTHO05D000890 1.1e-07 60.5 64 50.0
GSVIVG01025118001 Vitis vinifera HOM05D000911 ORTHO05D000890 1.1e-07 60.5 70 47.1
BcaC05g29557 Brassica carinata HOM05D000911 ORTHO05D000890 1.4e-07 60.1 60 50.0
A05p40570 Brassica napus HOM05D000911 ORTHO05D000890 1.4e-07 60.1 60 50.0
C05p59680 Brassica napus HOM05D000911 ORTHO05D000890 1.4e-07 60.1 60 50.0
BolC5t34622H Brassica oleracea HOM05D000911 ORTHO05D000890 1.4e-07 60.1 60 50.0
BraA05t22788Z Brassica rapa HOM05D000911 ORTHO05D000890 1.4e-07 60.1 60 50.0
Cpa.g.sc15.139 Carica papaya HOM05D004670 ORTHO05D022223 1.4e-07 60.1 83 42.2
Dinv10839 Davidia involucrata HOM05D000911 ORTHO05D000890 1.4e-07 60.1 60 55.0
Gohir.A07G115800 Gossypium hirsutum HOM05D000911 ORTHO05D000890 1.4e-07 60.1 62 48.4
Gohir.D07G120200 Gossypium hirsutum HOM05D000911 ORTHO05D000890 1.4e-07 60.1 62 48.4
Gorai.001G129400 Gossypium raimondii HOM05D000911 ORTHO05D000890 1.4e-07 60.1 62 48.4
RcHm_v2.0_Chr5g0061191 Rosa chinensis HOM05D000911 ORTHO05D000890 1.4e-07 60.1 60 50.0
Sabra08G0148700 Salix brachista HOM05D000911 ORTHO05D000890 1.4e-07 60.1 60 51.7
Sp3g06570 Schrenkiella parvula HOM05D000911 ORTHO05D000890 1.4e-07 60.1 60 50.0
A03p35380 Brassica napus HOM05D000911 ORTHO05D000890 1.8e-07 59.7 60 50.0
BraA03t12716Z Brassica rapa HOM05D000911 ORTHO05D000890 1.8e-07 59.7 60 50.0
Cpa.g.sc121.17 Carica papaya HOM05D000911 ORTHO05D121304 1.8e-07 59.7 40 70.0
Nitab4.5_0000888g0150 Nicotiana tabacum HOM05D000911 ORTHO05D000890 1.8e-07 59.7 62 51.6
Oeu022271.1 Olea europaea HOM05D000911 ORTHO05D000890 1.8e-07 59.7 60 53.3
CARHR082330 Cardamine hirsuta HOM05D000911 ORTHO05D000890 2.4e-07 59.3 60 50.0
Thhalv10020951m.g Eutrema salsugineum HOM05D000911 ORTHO05D000890 2.4e-07 59.3 60 50.0
Actinidia03028 Actinidia chinensis HOM05D000911 ORTHO05D000890 3.1e-07 58.9 60 50.0
Cpa.g.sc112.15 Carica papaya HOM05D000004 ORTHO05D000002 3.1e-07 58.9 44 63.6
Cpa.g.sc76.47 Carica papaya HOM05D008870 ORTHO05D010906 3.1e-07 58.9 42 64.3
Cpa.g.sc97.9 Carica papaya HOM05D006489 ORTHO05D007556 3.1e-07 58.9 76 40.8
BcaC01g04272 Brassica carinata HOM05D000911 ORTHO05D000890 4.1e-07 58.5 48 56.2
C03p42990 Brassica napus HOM05D000911 ORTHO05D000890 4.1e-07 58.5 48 56.2
Carub.0003s0721 Capsella rubella HOM05D000911 ORTHO05D000890 4.1e-07 58.5 60 48.3
Peaxi162Scf00389g00425 Petunia axillaris HOM05D000911 ORTHO05D000890 4.1e-07 58.5 62 50.0
Phvul.011G071800 Phaseolus vulgaris HOM05D000911 ORTHO05D000890 5.4e-07 58.2 48 58.3
VMungo1127G0170 Vigna mungo HOM05D000911 ORTHO05D000890 5.4e-07 58.2 48 58.3
EL10Ac9g22412 Beta vulgaris HOM05D000911 ORTHO05D000890 7.0e-07 57.8 60 51.7
CSS0016768 Camellia sinensis var. sinensis HOM05D000911 ORTHO05D000890 7.0e-07 57.8 60 50.0
Cpa.g.sc202.7 Carica papaya HOM05D000010 ORTHO05D000063 7.0e-07 57.8 43 67.4
CsaV3_6G021500 Cucumis sativus L. HOM05D000911 ORTHO05D000890 7.0e-07 57.8 60 50.0
DCAR_006465 Daucus carota HOM05D000911 ORTHO05D000890 7.0e-07 57.8 78 43.6
ECA232G1910 Erigeron canadensis HOM05D000911 ORTHO05D000890 7.0e-07 57.8 67 47.8
Gohir.A09G105500 Gossypium hirsutum HOM05D000911 ORTHO05D000890 7.0e-07 57.8 65 49.2
Aa31sc36G60 Aethionema arabicum HOM05D000911 ORTHO05D000890 9.2e-07 57.4 44 63.6
Cpa.g.sc101.45 Carica papaya HOM05D000350 ORTHO05D010906 9.2e-07 57.4 57 52.6
ClCG02G020840 Citrullus lanatus HOM05D000911 ORTHO05D000890 9.2e-07 57.4 60 50.0
Thecc.09G261800 Theobroma cacao HOM05D000911 ORTHO05D000890 9.2e-07 57.4 48 56.2
arahy.Tifrunner.gnm1.ann1.36ZVTJ Arachis hypogaea HOM05D000911 ORTHO05D000890 1.2e-06 57.0 60 50.0
arahy.Tifrunner.gnm1.ann1.M3NCM2 Arachis hypogaea HOM05D000911 ORTHO05D000890 1.2e-06 57.0 60 50.0
Cpa.g.sc56.68 Carica papaya HOM05D008870 ORTHO05D010906 1.2e-06 57.0 51 58.8
Cpa.g.sc71.10 Carica papaya HOM05D000609 ORTHO05D000462 1.2e-06 57.0 49 57.1
Sc05g0009240 Simmondsia chinensis HOM05D000911 ORTHO05D000890 1.2e-06 57.0 72 45.8
Aa31sc36G50 Aethionema arabicum HOM05D000911 ORTHO05D000890 1.6e-06 56.6 60 50.0
AUR62006499 Chenopodium quinoa HOM05D000911 ORTHO05D000890 1.6e-06 56.6 59 54.2
Gohir.A09G093300 Gossypium hirsutum HOM05D000911 ORTHO05D000890 1.6e-06 56.6 64 50.0
Gohir.D09G093100 Gossypium hirsutum HOM05D000911 ORTHO05D000890 1.6e-06 56.6 64 50.0
Gorai.006G109800 Gossypium raimondii HOM05D000911 ORTHO05D000890 1.6e-06 56.6 64 50.0
HanXRQChr14g0432951 Helianthus annuus HOM05D000911 ORTHO05D000890 1.6e-06 56.6 78 43.6
Lsat_1_v5_gn_2_25321 Lactuca sativa HOM05D000911 ORTHO05D000890 1.6e-06 56.6 78 43.6
CSS0028944 Camellia sinensis var. sinensis HOM05D000911 ORTHO05D043347 2.0e-06 56.2 58 53.4
Cpa.g.sc208.6 Carica papaya HOM05D004670 ORTHO05D118715 2.0e-06 56.2 50 58.0
Gohir.D09G102300 Gossypium hirsutum HOM05D000911 ORTHO05D000890 2.0e-06 56.2 65 47.7
Sed0004306 Sechium edule HOM05D000911 ORTHO05D000890 2.0e-06 56.2 60 50.0
Cpa.g.sc8.320 Carica papaya HOM05D008870 ORTHO05D010906 2.7e-06 55.8 59 49.2
ECA238G1216 Erigeron canadensis HOM05D000911 ORTHO05D000890 2.7e-06 55.8 44 59.1
Gorai.006G121300 Gossypium raimondii HOM05D000911 ORTHO05D000890 2.7e-06 55.8 66 47.0
TAR369G0717 Trochodendron aralioides HOM05D000911 ORTHO05D000890 2.7e-06 55.8 65 47.7
TAR623G1128 Trochodendron aralioides HOM05D000911 ORTHO05D000890 2.7e-06 55.8 67 49.3
CDE06G2003 Ceratophyllum demersum HOM05D000911 ORTHO05D000890 4.5e-06 55.1 65 49.2
CDE08G0576 Ceratophyllum demersum HOM05D000911 ORTHO05D000890 4.5e-06 55.1 65 49.2
MELO3C025736.2 Cucumis melo HOM05D000911 ORTHO05D000890 4.5e-06 55.1 60 48.3
Nn6g35041 Nelumbo nucifera HOM05D000911 ORTHO05D000890 4.5e-06 55.1 65 49.2
Sc21g0000100 Simmondsia chinensis HOM05D000911 ORTHO05D000890 4.5e-06 55.1 60 53.3
CSS0027999 Camellia sinensis var. sinensis HOM05D000911 ORTHO05D000890 5.9e-06 54.7 65 49.2
Oeu036302.1 Olea europaea HOM05D000911 ORTHO05D043347 5.9e-06 54.7 58 51.7
HPP92_006428 Vanilla planifolia HOM05D000911 ORTHO05D000890 5.9e-06 54.7 65 47.7
BolC3t16567H Brassica oleracea HOM05D000911 ORTHO05D000890 7.7e-06 54.3 59 45.8
Cpa.g.sc112.77 Carica papaya HOM05D008870 ORTHO05D010906 7.7e-06 54.3 51 54.9
Dinv29426 Davidia involucrata HOM05D000911 ORTHO05D000890 7.7e-06 54.3 65 49.2
Duzib170G0299 Durio zibethinus HOM05D000911 ORTHO05D000890 7.7e-06 54.3 48 56.2
QL01p036598 Quercus lobata HOM05D000911 ORTHO05D000890 7.7e-06 54.3 60 50.0


User provided reference genes

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