Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cpa.g.sc10.116 Carica papaya HOM05D007028 ORTHO05D003658 2.7e-97 358.6 177 100.0
Potri.003G179600 Populus trichocarpa HOM05D007028 ORTHO05D003658 2.1e-41 172.9 193 49.7
Aqoxy7G01883 Aquilegia oxysepala HOM05D007028 ORTHO05D003658 1.8e-40 169.9 186 51.6
Cfa001903 Carpinus fangiana HOM05D007028 ORTHO05D003658 2.4e-40 169.5 205 49.8
FAN02G1822 Fragaria x ananassa HOM05D007028 ORTHO05D003658 3.1e-40 169.1 216 47.7
FAN14G4516 Fragaria x ananassa HOM05D007028 ORTHO05D003658 5.3e-40 168.3 217 47.9
Prupe.3G095700 Prunus persica HOM05D007028 ORTHO05D003658 1.2e-39 167.2 234 47.0
FAN09G0870 Fragaria x ananassa HOM05D007028 ORTHO05D003658 5.8e-39 164.9 217 47.9
FvH4_6g28900 Fragaria vesca HOM05D007028 ORTHO05D003658 5.4e-37 158.3 217 46.5
Thecc.06G037900 Theobroma cacao HOM05D007028 ORTHO05D003658 7.1e-37 157.9 226 45.6
Actinidia25445 Actinidia chinensis HOM05D007028 ORTHO05D010012 9.3e-37 157.5 189 51.9
FAN05G3224 Fragaria x ananassa HOM05D007028 ORTHO05D003658 9.3e-37 157.5 217 46.1
Ca_01026_v3 Cicer arietinum L. HOM05D007028 ORTHO05D003658 3.5e-36 155.6 227 46.7
Dinv23308 Davidia involucrata HOM05D007028 ORTHO05D010012 2.3e-35 152.9 170 54.1
arahy.Tifrunner.gnm1.ann1.SE9SAL Arachis hypogaea HOM05D007028 ORTHO05D003658 9.6e-34 147.5 202 45.5
Sopen03g036070 Solanum pennellii HOM05D007028 ORTHO05D003658 1.3e-33 147.1 212 43.4
DCAR_007440 Daucus carota HOM05D007028 ORTHO05D003658 1.6e-33 146.7 187 46.0
MD17G1220000 Malus domestica HOM05D007028 ORTHO05D003658 2.8e-33 146.0 222 42.8
Peaxi162Scf00332g00034 Petunia axillaris HOM05D007028 ORTHO05D003658 2.8e-33 146.0 213 44.1
Lsat_1_v5_gn_8_100120 Lactuca sativa HOM05D007028 ORTHO05D003658 4.8e-33 145.2 190 47.4
Nitab4.5_0006291g0010 Nicotiana tabacum HOM05D007028 ORTHO05D003658 8.1e-33 144.4 208 46.2
Gorai.009G125300 Gossypium raimondii HOM05D007028 ORTHO05D003658 1.4e-32 143.7 232 43.1
COL.COLO4_26654 Corchorus olitorius HOM05D007028 ORTHO05D003658 3.1e-32 142.5 212 45.3
Gohir.D05G121800 Gossypium hirsutum HOM05D007028 ORTHO05D003658 3.1e-32 142.5 232 42.2
Medtr2g104800 Medicago truncatula HOM05D007028 ORTHO05D003658 3.1e-32 142.5 234 41.5
TPR.G19149 Trifolium pratense HOM05D007028 ORTHO05D003658 5.3e-32 141.7 234 41.9
Cc04_g04860 Coffea canephora HOM05D007028 ORTHO05D003658 6.9e-32 141.4 212 44.3
Solyc03g117170.1 Solanum lycopersicum HOM05D007028 ORTHO05D003658 9.0e-32 141.0 214 42.1
Gohir.A05G120800 Gossypium hirsutum HOM05D007028 ORTHO05D003658 2.0e-31 139.8 233 42.1
Lj3g0003871 Lotus japonicus HOM05D007028 ORTHO05D003658 3.8e-30 135.6 192 43.8
Nitab4.5_0001454g0010 Nicotiana tabacum HOM05D007028 ORTHO05D003658 4.9e-30 135.2 208 45.7
QL05p034297 Quercus lobata HOM05D007028 ORTHO05D003658 6.4e-30 134.8 109 61.5
PGSC0003DMG402014197 Solanum tuberosum HOM05D007028 ORTHO05D003658 6.4e-30 134.8 214 41.1
Manes.11G063900 Manihot esculenta HOM05D007028 ORTHO05D003658 3.2e-29 132.5 200 43.5
ATR0749G015 Amborella trichopoda HOM05D007028 ORTHO05D003658 4.2e-29 132.1 188 42.6
Ciclev10027378m.g Citrus clementina HOM05D007028 ORTHO05D003658 9.3e-29 131.0 98 62.2
MBI04_g44678_MAGBIO Magnolia biondii HOM05D007028 ORTHO05D003658 2.1e-28 129.8 199 40.2
Glyma.15G004600 Glycine max HOM05D007028 ORTHO05D003658 3.5e-28 129.0 242 38.8
Oeu010371.1 Olea europaea HOM05D007028 ORTHO05D003658 3.5e-28 129.0 196 42.9
HanXRQChr08g0235831 Helianthus annuus HOM05D007028 ORTHO05D003658 1.0e-27 127.5 190 42.1
Glyma.13G369200 Glycine max HOM05D007028 ORTHO05D003658 6.7e-27 124.8 236 39.4
Potri.001G048400 Populus trichocarpa HOM05D007028 ORTHO05D003658 8.7e-27 124.4 192 41.7
Phvul.005G180900 Phaseolus vulgaris HOM05D007028 ORTHO05D003658 5.6e-26 121.7 228 38.2
VMungo1080G1428 Vigna mungo HOM05D007028 ORTHO05D003658 3.7e-25 119.0 226 39.4
Migut.D01094 Erythranthe guttata HOM05D007028 ORTHO05D003658 4.0e-24 115.5 196 39.3
Actinidia18232 Actinidia chinensis HOM05D007028 ORTHO05D003658 9.3e-21 104.4 177 42.9
Sabra01G0033500 Salix brachista HOM05D007028 ORTHO05D003658 2.1e-20 103.2 176 38.6
Migut.I00721 Erythranthe guttata HOM05D007028 ORTHO05D003658 1.3e-19 100.5 177 37.3
Zm00001eb385060 Zea mays HOM05D007028 ORTHO05D003658 2.0e-15 86.7 205 33.7
ATR0215G020 Amborella trichopoda HOM05D007028 ORTHO05D003658 2.6e-15 86.3 70 51.4
ATR0215G032 Amborella trichopoda HOM05D007028 ORTHO05D003658 2.6e-15 86.3 80 52.5
Glyma.19G251200 Glycine max HOM05D007028 ORTHO05D003658 7.6e-15 84.7 119 41.2
Os06g0568400 Oryza sativa ssp. japonica HOM05D007028 ORTHO05D003658 1.7e-14 83.6 80 52.5
arahy.Tifrunner.gnm1.ann1.RXM0S4 Arachis hypogaea HOM05D007028 ORTHO05D003658 5.0e-14 82.0 83 45.8
arahy.Tifrunner.gnm1.ann1.W3CHFV Arachis hypogaea HOM05D007028 ORTHO05D003658 5.0e-14 82.0 83 45.8
DCAR_005532 Daucus carota HOM05D007028 ORTHO05D003658 5.0e-14 82.0 67 50.7
Actinidia23722 Actinidia chinensis HOM05D007814 ORTHO05D009902 8.4e-14 81.3 68 51.5
Lj2C51T14 Lonicera japonica HOM05D007028 ORTHO05D003658 8.4e-14 81.3 68 51.5
COL.COLO4_04560 Corchorus olitorius HOM05D007028 ORTHO05D003658 1.4e-13 80.5 68 48.5
Cpa.g.sc8.155 Carica papaya HOM05D007028 ORTHO05D003658 3.2e-13 79.3 68 47.1
Gohir.A11G138300 Gossypium hirsutum HOM05D007028 ORTHO05D003658 3.2e-13 79.3 68 48.5
Gorai.007G154400 Gossypium raimondii HOM05D007028 ORTHO05D003658 3.2e-13 79.3 68 48.5
Glyma.03G253700 Glycine max HOM05D007028 ORTHO05D003658 5.5e-13 78.6 65 49.2
Ciclev10013422m.g Citrus clementina HOM05D007028 ORTHO05D003658 7.2e-13 78.2 68 51.5
Gohir.D11G144200 Gossypium hirsutum HOM05D007028 ORTHO05D003658 9.3e-13 77.8 68 47.1
Cfa002571 Carpinus fangiana HOM05D007028 ORTHO05D003658 1.2e-12 77.4 97 40.2
Lj1g0008030 Lotus japonicus HOM05D007028 ORTHO05D003658 1.6e-12 77.0 100 42.0
Manes.08G105400 Manihot esculenta HOM05D007028 ORTHO05D003658 3.5e-12 75.9 68 47.1
TAR633G1987 Trochodendron aralioides HOM05D007028 ORTHO05D003658 3.5e-12 75.9 87 44.8
Actinidia09481 Actinidia chinensis HOM05D007028 ORTHO05D003658 4.6e-12 75.5 68 47.1
Manes.09G183300 Manihot esculenta HOM05D007028 ORTHO05D003658 4.6e-12 75.5 75 46.7
Dinv19203 Davidia involucrata HOM05D007028 ORTHO05D003658 6.1e-12 75.1 68 47.1
Potri.002G242400 Populus trichocarpa HOM05D007028 ORTHO05D003658 1.0e-11 74.3 68 42.6
Sopen09g023970 Solanum pennellii HOM05D007028 ORTHO05D003658 3.0e-11 72.8 68 44.1
Ciclev10023784m.g Citrus clementina HOM05D007028 ORTHO05D003658 3.9e-11 72.4 84 40.5
Oeu043137.1 Olea europaea HOM05D007028 ORTHO05D003658 3.9e-11 72.4 143 33.6
Solyc09g061240.1 Solanum lycopersicum HOM05D007028 ORTHO05D003658 3.9e-11 72.4 68 44.1
PGSC0003DMG400046108 Solanum tuberosum HOM05D007028 ORTHO05D003658 3.9e-11 72.4 68 44.1
Thecc.01G225600 Theobroma cacao HOM05D007028 ORTHO05D003658 3.9e-11 72.4 68 44.1
VMungo1383G2132 Vigna mungo HOM05D007028 ORTHO05D003658 3.9e-11 72.4 92 33.7
Nitab4.5_0000045g0190 Nicotiana tabacum HOM05D007028 ORTHO05D003658 5.1e-11 72.0 68 44.1
Medtr7g057900 Medicago truncatula HOM05D007028 ORTHO05D003658 6.7e-11 71.6 68 41.2
TPR.G23292 Trifolium pratense HOM05D007028 ORTHO05D003658 8.7e-11 71.2 68 42.6
Peaxi162Scf00107g00204 Petunia axillaris HOM05D007028 ORTHO05D003658 1.1e-10 70.9 97 35.1
Hma1.2p1_0226F.1_g095710 Hydrangea macrophylla HOM05D007028 ORTHO05D003658 1.5e-10 70.5 133 32.3
Nitab4.5_0003312g0020 Nicotiana tabacum HOM05D007028 ORTHO05D003658 1.5e-10 70.5 68 41.2
Cpa.g.sc136.48 Carica papaya HOM05D002002 ORTHO05D003658 1.9e-10 70.1 79 44.3
Eucgr.H01353 Eucalyptus grandis HOM05D007028 ORTHO05D003658 1.9e-10 70.1 129 34.9
MSTRG.14910 Avicennia marina HOM05D002002 ORTHO05D003658 2.5e-10 69.7 100 37.0
DCAR_019665 Daucus carota HOM05D002002 ORTHO05D003658 3.3e-10 69.3 82 39.0
Glyma.03G080500 Glycine max HOM05D007028 ORTHO05D003658 4.3e-10 68.9 68 42.6
Lsat_1_v5_gn_9_12301 Lactuca sativa HOM05D007028 ORTHO05D003658 4.3e-10 68.9 68 42.6
Manes.12G044800 Manihot esculenta HOM05D007028 ORTHO05D003658 5.7e-10 68.6 135 30.4
Cc01_g17020 Coffea canephora HOM05D007028 ORTHO05D003658 7.4e-10 68.2 87 36.8
Actinidia37594 Actinidia chinensis HOM05D007028 ORTHO05D003658 1.3e-09 67.4 59 47.5
Lsat_1_v5_gn_2_16281 Lactuca sativa HOM05D007028 ORTHO05D003658 1.3e-09 67.4 76 42.1
Sed0022017 Sechium edule HOM05D007028 ORTHO05D003658 1.3e-09 67.4 68 35.3
MD10G1164400 Malus domestica HOM05D007028 ORTHO05D003658 1.6e-09 67.0 92 34.8
Lsat_1_v5_gn_8_3220 Lactuca sativa HOM05D007028 ORTHO05D003658 2.2e-09 66.6 68 44.1
MD05G1175300 Malus domestica HOM05D007028 ORTHO05D003658 2.2e-09 66.6 68 42.6
Manes.12G063951 Manihot esculenta HOM05D002002 ORTHO05D003658 2.8e-09 66.2 175 26.3
QL09p054524 Quercus lobata HOM05D007028 ORTHO05D003658 2.8e-09 66.2 68 42.6
Aqoxy6G00290 Aquilegia oxysepala HOM05D002002 ORTHO05D003658 3.7e-09 65.9 91 39.6
FAN15G3354 Fragaria x ananassa HOM05D007028 ORTHO05D003658 3.7e-09 65.9 68 45.6
FAN27G2710 Fragaria x ananassa HOM05D007028 ORTHO05D003658 3.7e-09 65.9 121 31.4
Gohir.A07G193000 Gossypium hirsutum HOM05D002002 ORTHO05D003658 3.7e-09 65.9 182 30.2
Psat5g168520 Pisum sativum HOM05D007028 ORTHO05D003658 3.7e-09 65.9 168 24.4
FvH4_2g19050 Fragaria vesca HOM05D007028 ORTHO05D003658 4.8e-09 65.5 68 44.1
Peaxi162Scf00047g02117 Petunia axillaris HOM05D002002 ORTHO05D003658 6.3e-09 65.1 181 27.6
CsaV3_7G025940 Cucumis sativus L. HOM05D007028 ORTHO05D003658 8.2e-09 64.7 68 35.3
Lsat_1_v5_gn_5_122320 Lactuca sativa HOM05D002002 ORTHO05D003658 8.2e-09 64.7 90 35.6
MBI10_g11201_MAGBIO Magnolia biondii HOM05D002002 ORTHO05D003658 8.2e-09 64.7 70 41.4
Haze_12592 Corylus avellana HOM05D002002 ORTHO05D003658 1.4e-08 63.9 190 32.6
FAN24G0765 Fragaria x ananassa HOM05D007028 ORTHO05D003658 1.4e-08 63.9 68 42.6
Oeu034272.1 Olea europaea HOM05D002002 ORTHO05D003658 1.4e-08 63.9 182 29.7
Oeu034273.1 Olea europaea HOM05D002002 ORTHO05D003658 1.4e-08 63.9 182 29.7
Actinidia35198 Actinidia chinensis HOM05D002148 ORTHO05D002547 1.8e-08 63.5 188 31.4
CsaV3_2G024930 Cucumis sativus L. HOM05D002002 ORTHO05D003658 1.8e-08 63.5 72 43.1
HanXRQChr10g0306811 Helianthus annuus HOM05D002002 ORTHO05D003658 1.8e-08 63.5 146 35.6
Oeu010092.1 Olea europaea HOM05D007028 ORTHO05D003658 1.8e-08 63.5 151 40.4
PGR102G0007 Punica granatum HOM05D002002 ORTHO05D003658 1.8e-08 63.5 70 38.6
CSS0040170 Camellia sinensis var. sinensis HOM05D002002 ORTHO05D003658 2.4e-08 63.2 101 33.7
Prupe.8G203000 Prunus persica HOM05D007028 ORTHO05D003658 2.4e-08 63.2 92 34.8
DCAR_021086 Daucus carota HOM05D002002 ORTHO05D003658 4.1e-08 62.4 70 38.6
Gohir.D07G199350 Gossypium hirsutum HOM05D002002 ORTHO05D003658 4.1e-08 62.4 181 28.7
RcHm_v2.0_Chr2g0155671 Rosa chinensis HOM05D002002 ORTHO05D003658 4.1e-08 62.4 71 39.4
Aqoxy5G03765 Aquilegia oxysepala HOM05D002002 ORTHO05D003658 5.3e-08 62.0 92 39.1
ClCG09G009040 Citrullus lanatus HOM05D007028 ORTHO05D003658 5.3e-08 62.0 68 30.9
Cc11_g15730 Coffea canephora HOM05D002002 ORTHO05D008711 6.9e-08 61.6 70 41.4
MELO3C010690.2 Cucumis melo HOM05D002002 ORTHO05D003658 6.9e-08 61.6 189 27.5
Potri.010G046225 Populus trichocarpa HOM05D002002 ORTHO05D003658 9.0e-08 61.2 68 41.2
TWI36G0682 Tripterygium wilfordii HOM05D002002 ORTHO05D003658 9.0e-08 61.2 177 29.4
Haze_24802 Corylus avellana HOM05D007028 ORTHO05D003658 1.2e-07 60.8 54 44.4
FvH4_6g40440 Fragaria vesca HOM05D002002 ORTHO05D003658 1.2e-07 60.8 71 38.0
FAN02G0217 Fragaria x ananassa HOM05D002002 ORTHO05D003658 1.2e-07 60.8 71 38.0
Gorai.001G223200 Gossypium raimondii HOM05D002002 ORTHO05D003658 1.2e-07 60.8 181 28.7
Nitab4.5_0001229g0060 Nicotiana tabacum HOM05D002002 ORTHO05D003658 1.2e-07 60.8 186 28.5
Manes.12G023250 Manihot esculenta HOM05D002002 ORTHO05D003658 1.5e-07 60.5 70 40.0
TAR627G0575 Trochodendron aralioides HOM05D003572 ORTHO05D004118 1.5e-07 60.5 70 41.4
Cfa014206 Carpinus fangiana HOM05D002002 ORTHO05D003658 2.0e-07 60.1 183 31.7
Hma1.2p1_0629F.1_g192180 Hydrangea macrophylla HOM05D002002 ORTHO05D003658 2.0e-07 60.1 193 27.5
AagrBONN_evm.TU.Sc2ySwM_362.219 Anthoceros agrestis HOM05D005780 ORTHO05D007289 2.6e-07 59.7 70 44.3
Migut.M00058 Erythranthe guttata HOM05D002002 ORTHO05D003658 2.6e-07 59.7 180 26.7
CiPaw.03G283400 Carya illinoinensis HOM05D002002 ORTHO05D003658 3.4e-07 59.3 182 28.0
MELO3C021015.2 Cucumis melo HOM05D007028 ORTHO05D003658 3.4e-07 59.3 134 26.9
FAN09G2779 Fragaria x ananassa HOM05D002002 ORTHO05D003658 3.4e-07 59.3 71 36.6
Atru.chr11.2098 Acer truncatum HOM05D002002 ORTHO05D003658 4.5e-07 58.9 176 29.0
ClCG08G017700 Citrullus lanatus HOM05D002002 ORTHO05D003658 4.5e-07 58.9 72 38.9
MD13G1101500 Malus domestica HOM05D002002 ORTHO05D003658 4.5e-07 58.9 109 30.3
ATR0824G058 Amborella trichopoda HOM05D002002 ORTHO05D003658 7.7e-07 58.2 174 29.9
Cc05_g02030 Coffea canephora HOM05D002002 ORTHO05D003658 7.7e-07 58.2 181 29.8
ECA238G1648 Erigeron canadensis HOM05D007028 ORTHO05D003658 7.7e-07 58.2 102 35.3
ECA234G3591 Erigeron canadensis HOM05D002002 ORTHO05D003658 1.7e-06 57.0 176 28.4
Migut.N00615 Erythranthe guttata HOM05D007028 ORTHO05D003658 1.7e-06 57.0 141 27.7
Manes.13G024400 Manihot esculenta HOM05D002002 ORTHO05D003658 2.2e-06 56.6 174 27.0
Peaxi162Scf00128g00135 Petunia axillaris HOM05D002002 ORTHO05D008711 2.2e-06 56.6 176 29.0
CDE06G2783 Ceratophyllum demersum HOM05D002638 ORTHO05D002821 2.9e-06 56.2 99 34.3
ECA233G4313 Erigeron canadensis HOM05D002002 ORTHO05D008711 2.9e-06 56.2 99 31.3
FAN05G0600 Fragaria x ananassa HOM05D002002 ORTHO05D003658 2.9e-06 56.2 178 30.9
FAN05G3832 Fragaria x ananassa HOM05D002002 ORTHO05D003658 2.9e-06 56.2 209 25.8
FAN05G4965 Fragaria x ananassa HOM05D002002 ORTHO05D003658 2.9e-06 56.2 178 30.9
Potri.002G217100 Populus trichocarpa HOM05D002002 ORTHO05D003658 2.9e-06 56.2 147 30.6
Prupe.1G244300 Prunus persica HOM05D002002 ORTHO05D003658 2.9e-06 56.2 82 31.7
FAN14G1296 Fragaria x ananassa HOM05D002002 ORTHO05D003658 3.8e-06 55.8 71 36.6
Gohir.A03G135305 Gossypium hirsutum HOM05D002002 ORTHO05D003658 3.8e-06 55.8 94 30.9
Oeu023068.1 Olea europaea HOM05D002002 ORTHO05D003658 3.8e-06 55.8 70 40.0
Thecc.01G199000 Theobroma cacao HOM05D002002 ORTHO05D003658 3.8e-06 55.8 190 27.9
Ciclev10017528m.g Citrus clementina HOM05D002002 ORTHO05D003658 6.5e-06 55.1 145 29.0
COL.COLO4_19649 Corchorus olitorius HOM05D002002 ORTHO05D003658 6.5e-06 55.1 70 38.6
Haze_12247 Corylus avellana HOM05D002002 ORTHO05D008711 6.5e-06 55.1 70 37.1
Eucgr.B03286 Eucalyptus grandis HOM05D002002 ORTHO05D003658 6.5e-06 55.1 186 28.0
Gohir.D02G158850 Gossypium hirsutum HOM05D002002 ORTHO05D003658 6.5e-06 55.1 94 30.9
Manes.18G145405 Manihot esculenta HOM05D001767 ORTHO05D001714 6.5e-06 55.1 101 32.7
Nitab4.5_0013754g0020 Nicotiana tabacum HOM05D002002 ORTHO05D003658 6.5e-06 55.1 178 27.5
RcHm_v2.0_Chr4g0432961 Rosa chinensis HOM05D002002 ORTHO05D008711 6.5e-06 55.1 177 29.9
DCAR_024430 Daucus carota HOM05D002002 ORTHO05D008711 8.5e-06 54.7 69 36.2
FAN02G4604 Fragaria x ananassa HOM05D002002 ORTHO05D003658 8.5e-06 54.7 178 30.3
Lsat_1_v5_gn_8_152141 Lactuca sativa HOM05D002002 ORTHO05D008711 8.5e-06 54.7 61 41.0
Nitab4.5_0003609g0010 Nicotiana tabacum HOM05D002002 ORTHO05D008711 8.5e-06 54.7 100 31.0


User provided reference genes

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