Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cpa.g.sc1.96 Carica papaya HOM05D003853 ORTHO05D004171 4.0e-55 218.0 123 100.0
Cpa.g.sc1.97 Carica papaya HOM05D003853 ORTHO05D004171 7.6e-30 134.0 112 67.0
Nn4g23335 Nelumbo nucifera HOM05D003853 ORTHO05D004171 2.5e-25 119.0 113 59.3
CiPaw.05G127700 Carya illinoinensis HOM05D003853 ORTHO05D004171 5.7e-25 117.9 113 56.6
Sc04g0007740 Simmondsia chinensis HOM05D003853 ORTHO05D004171 1.3e-24 116.7 141 49.6
TAR622G0811 Trochodendron aralioides HOM05D003853 ORTHO05D004171 1.6e-24 116.3 121 56.2
Dinv16707 Davidia involucrata HOM05D003853 ORTHO05D004171 1.8e-23 112.8 112 57.1
Cfa008902 Carpinus fangiana HOM05D003853 ORTHO05D004171 1.2e-22 110.2 126 49.2
Eucgr.B03178 Eucalyptus grandis HOM05D003853 ORTHO05D004171 2.6e-22 109.0 158 42.4
Manes.01G030100 Manihot esculenta HOM05D003853 ORTHO05D004171 3.4e-22 108.6 117 54.7
PGSC0003DMG400035643 Solanum tuberosum HOM05D003853 ORTHO05D004171 3.4e-22 108.6 110 56.4
Haze_11978 Corylus avellana HOM05D003853 ORTHO05D004171 4.5e-22 108.2 126 46.8
Nitab4.5_0000014g0290 Nicotiana tabacum HOM05D003853 ORTHO05D004171 4.5e-22 108.2 108 55.6
ATR0111G024 Amborella trichopoda HOM05D003853 ORTHO05D004171 5.9e-22 107.8 138 46.4
Duzib251G0928 Durio zibethinus HOM05D003853 ORTHO05D004171 5.9e-22 107.8 118 52.5
Sopen04g001500 Solanum pennellii HOM05D003853 ORTHO05D004171 7.6e-22 107.5 112 54.5
Thecc.02G335500 Theobroma cacao HOM05D003853 ORTHO05D004171 1.0e-21 107.1 120 55.8
Solyc04g005480.1 Solanum lycopersicum HOM05D003853 ORTHO05D004171 2.9e-21 105.5 112 53.6
Nitab4.5_0002806g0050 Nicotiana tabacum HOM05D003853 ORTHO05D004171 3.8e-21 105.1 118 51.7
Hma1.2p1_0354F.1_g133590 Hydrangea macrophylla HOM05D003853 ORTHO05D004171 8.5e-21 104.0 139 46.0
Peaxi162Scf00930g00051 Petunia axillaris HOM05D003853 ORTHO05D004171 5.5e-20 101.3 115 49.6
PGR102G0417 Punica granatum HOM05D003853 ORTHO05D004171 7.2e-20 100.9 115 53.0
PGR102G3239 Punica granatum HOM05D003853 ORTHO05D004171 7.2e-20 100.9 115 53.0
Thecc.02G335600 Theobroma cacao HOM05D003853 ORTHO05D004171 7.2e-20 100.9 115 53.9
TWI75G0276 Tripterygium wilfordii HOM05D003853 ORTHO05D004171 7.2e-20 100.9 120 48.3
Ah.03g139150 Amaranthus hybridus HOM05D003853 ORTHO05D004171 1.6e-19 99.8 118 50.8
CsaV3_5G033160 Cucumis sativus L. HOM05D003853 ORTHO05D004171 1.6e-19 99.8 112 50.9
AT2G03440 Arabidopsis thaliana HOM05D003853 ORTHO05D004171 2.1e-19 99.4 118 49.2
Duzib251G0287 Durio zibethinus HOM05D003853 ORTHO05D004171 2.7e-19 99.0 102 56.9
Gohir.A03G103000 Gossypium hirsutum HOM05D003853 ORTHO05D004171 2.7e-19 99.0 109 53.2
Gorai.005G143900 Gossypium raimondii HOM05D003853 ORTHO05D004171 2.7e-19 99.0 109 52.3
Gohir.D02G128200 Gossypium hirsutum HOM05D003853 ORTHO05D004171 7.9e-19 97.4 109 51.4
CSS0028215 Camellia sinensis var. sinensis HOM05D003853 ORTHO05D004171 1.0e-18 97.1 130 47.7
COL.COLO4_27925 Corchorus olitorius HOM05D003853 ORTHO05D004171 1.4e-18 96.7 130 52.3
QL03p070993 Quercus lobata HOM05D003853 ORTHO05D004171 1.4e-18 96.7 112 51.8
Sed0005785 Sechium edule HOM05D003853 ORTHO05D004171 1.4e-18 96.7 108 53.7
ClCG05G023860 Citrullus lanatus HOM05D003853 ORTHO05D004171 2.3e-18 95.9 117 47.9
Sp2g14360 Schrenkiella parvula HOM05D003853 ORTHO05D004171 3.0e-18 95.5 122 47.5
CiPaw.05G127600 Carya illinoinensis HOM05D003853 ORTHO05D004171 5.1e-18 94.7 113 50.4
Carub.0005s0241 Capsella rubella HOM05D003853 ORTHO05D004171 1.9e-17 92.8 128 44.5
Ciclev10033000m.g Citrus clementina HOM05D003853 ORTHO05D004171 1.9e-17 92.8 114 50.9
Lj6P782T102 Lonicera japonica HOM05D003853 ORTHO05D004171 1.9e-17 92.8 112 52.7
Oeu048150.1 Olea europaea HOM05D003853 ORTHO05D004171 1.9e-17 92.8 118 47.5
CSS0045101 Camellia sinensis var. sinensis HOM05D003853 ORTHO05D004171 3.3e-17 92.0 132 46.2
AL5G13190 Arabidopsis lyrata HOM05D003853 ORTHO05D004171 7.4e-17 90.9 124 46.0
BcaC03g17214 Brassica carinata HOM05D003853 ORTHO05D004171 7.4e-17 90.9 116 46.6
BcaC06g31183 Brassica carinata HOM05D003853 ORTHO05D004171 7.4e-17 90.9 119 45.4
C02p51440 Brassica napus HOM05D003853 ORTHO05D004171 7.4e-17 90.9 116 46.6
BolC2t11232H Brassica oleracea HOM05D003853 ORTHO05D004171 7.4e-17 90.9 116 46.6
Actinidia12318 Actinidia chinensis HOM05D003853 ORTHO05D004171 9.7e-17 90.5 98 56.1
QL03p070977 Quercus lobata HOM05D003853 ORTHO05D004171 1.3e-16 90.1 113 48.7
BcaB07g30301 Brassica carinata HOM05D003853 ORTHO05D004171 1.7e-16 89.7 120 45.0
QL03p071021 Quercus lobata HOM05D003853 ORTHO05D004171 1.7e-16 89.7 119 46.2
BcaC06g33998 Brassica carinata HOM05D003853 ORTHO05D004171 2.2e-16 89.4 119 45.4
C07p33870 Brassica napus HOM05D003853 ORTHO05D004171 2.2e-16 89.4 119 45.4
BolC7t43901H Brassica oleracea HOM05D003853 ORTHO05D004171 2.2e-16 89.4 119 45.4
BraA06t27202Z Brassica rapa HOM05D003853 ORTHO05D004171 2.2e-16 89.4 119 45.4
Ah.03g139160 Amaranthus hybridus HOM05D003853 ORTHO05D004171 2.8e-16 89.0 123 44.7
A06p43140 Brassica napus HOM05D003853 ORTHO05D004171 2.8e-16 89.0 119 45.4
CARHR145780 Cardamine hirsuta HOM05D003853 ORTHO05D004171 2.8e-16 89.0 148 39.2
COL.COLO4_27926 Corchorus olitorius HOM05D003853 ORTHO05D004171 2.8e-16 89.0 121 49.6
Rhsim03G0019300 Rhododendron simsii HOM05D003853 ORTHO05D004171 2.8e-16 89.0 99 50.5
Sp1g12030 Schrenkiella parvula HOM05D003853 ORTHO05D004171 2.8e-16 89.0 114 47.4
A02p33450 Brassica napus HOM05D003853 ORTHO05D004171 4.8e-16 88.2 116 45.7
QL03p071009 Quercus lobata HOM05D003853 ORTHO05D004171 4.8e-16 88.2 114 46.5
CANSAT64G1198 Cannabis sativa HOM05D003853 ORTHO05D004171 6.3e-16 87.8 107 51.4
MELO3C012136.2 Cucumis melo HOM05D003853 ORTHO05D004171 1.1e-15 87.0 114 48.2
CDE02G1866 Ceratophyllum demersum HOM05D003853 ORTHO05D004171 1.8e-15 86.3 110 48.2
Actinidia28167 Actinidia chinensis HOM05D003853 ORTHO05D004171 2.4e-15 85.9 73 64.4
BraA02t08366Z Brassica rapa HOM05D003853 ORTHO05D004171 2.4e-15 85.9 116 43.1
SGA_v2.0_scaffold16G07759 Striga asiatica HOM05D003853 ORTHO05D004171 3.1e-15 85.5 112 47.3
AL1G25770 Arabidopsis lyrata HOM05D003853 ORTHO05D004171 4.1e-15 85.1 115 47.0
Thhalv10008975m.g Eutrema salsugineum HOM05D003853 ORTHO05D004171 5.3e-15 84.7 118 44.1
MSTRG.7763 Avicennia marina HOM05D003853 ORTHO05D004171 9.1e-15 84.0 110 46.4
CARHR014300 Cardamine hirsuta HOM05D003853 ORTHO05D004171 9.1e-15 84.0 107 48.6
BcaB03g13120 Brassica carinata HOM05D003853 ORTHO05D004171 1.2e-14 83.6 115 44.3
AUR62003133 Chenopodium quinoa HOM05D003853 ORTHO05D004171 1.2e-14 83.6 129 41.1
Glyma.07G226567 Glycine max HOM05D003853 ORTHO05D004171 1.5e-14 83.2 99 45.5
Glyma.07G226633 Glycine max HOM05D003853 ORTHO05D004171 1.5e-14 83.2 99 45.5
Thhalv10004968m.g Eutrema salsugineum HOM05D003853 ORTHO05D004171 2.0e-14 82.8 125 43.2
Aa31LG2G7160 Aethionema arabicum HOM05D006961 ORTHO05D008809 2.6e-14 82.4 123 43.1
AUR62007952 Chenopodium quinoa HOM05D003853 ORTHO05D004171 2.6e-14 82.4 97 49.5
Sabra08G0070000 Salix brachista HOM05D003853 ORTHO05D004171 2.6e-14 82.4 118 42.4
A08p32180 Brassica napus HOM05D003853 ORTHO05D004171 4.5e-14 81.6 115 44.3
Sed0019389 Sechium edule HOM05D003853 ORTHO05D004171 4.5e-14 81.6 136 44.9
vmacro22355 Vaccinium macrocarpon HOM05D003853 ORTHO05D004171 4.5e-14 81.6 93 50.5
BolC8t49263H Brassica oleracea HOM05D003853 ORTHO05D004171 5.9e-14 81.3 115 43.5
BraA08t35142Z Brassica rapa HOM05D003853 ORTHO05D004171 5.9e-14 81.3 121 43.8
Potri.008G093200 Populus trichocarpa HOM05D003853 ORTHO05D004171 5.9e-14 81.3 117 45.3
BcaC07g38709 Brassica carinata HOM05D003853 ORTHO05D004171 7.7e-14 80.9 105 46.7
SEGI_33923 Sequoiadendron giganteum HOM05D003853 ORTHO05D004171 1.0e-13 80.5 124 41.1
Sabra10G0122600 Salix brachista HOM05D003853 ORTHO05D004171 1.3e-13 80.1 114 47.4
Sabra10G0122700 Salix brachista HOM05D003853 ORTHO05D004171 1.7e-13 79.7 114 47.4
HPP92_023639 Vanilla planifolia HOM05D003853 ORTHO05D004171 3.8e-13 78.6 114 44.7
Lj4g0005239 Lotus japonicus HOM05D003853 ORTHO05D004171 5.0e-13 78.2 109 46.8
Aa31LG4G16180 Aethionema arabicum HOM05D003853 ORTHO05D004171 6.5e-13 77.8 115 42.6
THA.LOC104805946 Tarenaya hassleriana HOM05D003853 ORTHO05D004171 8.5e-13 77.4 81 53.1
VMungo0251G2653 Vigna mungo HOM05D003853 ORTHO05D004171 8.5e-13 77.4 98 46.9
vmacro22356 Vaccinium macrocarpon HOM05D003853 ORTHO05D004171 1.1e-12 77.0 136 37.5
MBI16_g00500_MAGBIO Magnolia biondii HOM05D003853 ORTHO05D004171 1.4e-12 76.6 83 50.6
AT1G13930 Arabidopsis thaliana HOM05D003853 ORTHO05D004171 1.9e-12 76.3 114 43.9
AUR62003132 Chenopodium quinoa HOM05D003853 ORTHO05D004171 2.5e-12 75.9 112 42.9
Potri.010G161200 Populus trichocarpa HOM05D003853 ORTHO05D004171 2.5e-12 75.9 118 44.1
HPP92_023625 Vanilla planifolia HOM05D003853 ORTHO05D004171 4.2e-12 75.1 114 42.1
Phvul.002G168000 Phaseolus vulgaris HOM05D003853 ORTHO05D004171 5.5e-12 74.7 99 44.4
Sc04g0007730 Simmondsia chinensis HOM05D003853 ORTHO05D004171 5.5e-12 74.7 104 45.2
Carub.0001s1363 Capsella rubella HOM05D003853 ORTHO05D004171 9.4e-12 73.9 116 43.1
Cc11_g12330 Coffea canephora HOM05D003853 ORTHO05D004171 1.6e-11 73.2 125 40.0
DCAR_027453 Daucus carota HOM05D003853 ORTHO05D004171 1.6e-11 73.2 109 45.0
Peaxi162Scf00314g00022 Petunia axillaris HOM05D003853 ORTHO05D004171 2.7e-11 72.4 80 51.2
Zm00001eb007060 Zea mays HOM05D003853 ORTHO05D004171 4.7e-11 71.6 95 50.5
BcaB03g13123 Brassica carinata HOM05D003853 ORTHO05D004171 6.1e-11 71.2 69 56.5
MSTRG.2322 Avicennia marina HOM05D003853 ORTHO05D004171 7.9e-11 70.9 84 48.8
CDE02G2907 Ceratophyllum demersum HOM05D003853 ORTHO05D004171 1.8e-10 69.7 67 58.2
C08p16390 Brassica napus HOM05D003853 ORTHO05D004171 3.0e-10 68.9 72 52.8
Migut.E00060 Erythranthe guttata HOM05D003853 ORTHO05D004171 3.9e-10 68.6 127 38.6
unitig_699.g19910 Utricularia gibba HOM05D003853 ORTHO05D004171 3.9e-10 68.6 76 52.6
Ah.03g139140 Amaranthus hybridus HOM05D003853 ORTHO05D004171 5.1e-10 68.2 70 57.1
SalBow2G1698 Salvia bowleyana HOM05D003853 ORTHO05D004171 6.7e-10 67.8 120 39.2
Zm00001eb334140 Zea mays HOM05D003853 ORTHO05D004171 6.7e-10 67.8 77 51.9
FAN17G1589 Fragaria x ananassa HOM05D003853 ORTHO05D004171 8.8e-10 67.4 117 40.2
HanXRQChr10g0308121 Helianthus annuus HOM05D003853 ORTHO05D004171 1.1e-09 67.0 119 38.7
Manes.01G030000 Manihot esculenta HOM05D003853 ORTHO05D004171 1.1e-09 67.0 81 46.9
Nitab4.5_0000334g0290 Nicotiana tabacum HOM05D003853 ORTHO05D004171 1.1e-09 67.0 89 47.2
SEGI_07999 Sequoiadendron giganteum HOM05D003853 ORTHO05D004171 1.1e-09 67.0 82 46.3
MSTRG.735 Avicennia marina HOM05D003853 ORTHO05D004171 1.5e-09 66.6 69 58.0
FAN12G3704 Fragaria x ananassa HOM05D002141 ORTHO05D002119 1.5e-09 66.6 120 38.3
PSO017G6890 Papaver somniferum HOM05D003853 ORTHO05D004171 1.5e-09 66.6 129 38.0
SalBow2G1975 Salvia bowleyana HOM05D003853 ORTHO05D004171 1.5e-09 66.6 94 48.9
ECA234G0349 Erigeron canadensis HOM05D003853 ORTHO05D004171 2.0e-09 66.2 116 39.7
Sopen05g007400 Solanum pennellii HOM05D003853 ORTHO05D004171 2.6e-09 65.9 71 53.5
SGA_v2.0_scaffold287G47154 Striga asiatica HOM05D003853 ORTHO05D004171 2.6e-09 65.9 64 54.7
Lsat_1_v5_gn_4_11980 Lactuca sativa HOM05D003853 ORTHO05D004171 3.3e-09 65.5 66 56.1
Nitab4.5_0015741g0010 Nicotiana tabacum HOM05D003853 ORTHO05D004171 3.3e-09 65.5 149 33.6
Ah.02g126530 Amaranthus hybridus HOM05D003853 ORTHO05D004171 4.4e-09 65.1 71 54.9
SGA_v2.0_scaffold36G14434 Striga asiatica HOM05D003853 ORTHO05D004171 4.4e-09 65.1 84 48.8
Migut.L01216 Erythranthe guttata HOM05D003853 ORTHO05D004171 5.7e-09 64.7 87 46.0
Psat7g135200 Pisum sativum HOM05D003853 ORTHO05D004171 5.7e-09 64.7 121 41.3
BcaC07g38710 Brassica carinata HOM05D003853 ORTHO05D004171 7.4e-09 64.3 66 54.5
C08p16400 Brassica napus HOM05D003853 ORTHO05D004171 7.4e-09 64.3 66 54.5
BolC8t49264H Brassica oleracea HOM05D003853 ORTHO05D004171 7.4e-09 64.3 66 54.5
vmacro22354 Vaccinium macrocarpon HOM05D003853 ORTHO05D004171 7.4e-09 64.3 56 60.7
Medtr4g082860 Medicago truncatula HOM05D003853 ORTHO05D004171 1.7e-08 63.2 112 40.2
Lalb_Chr05g0215091 Lupinus albus HOM05D003853 ORTHO05D004171 2.8e-08 62.4 63 55.6
Prupe.1G282500 Prunus persica HOM05D003853 ORTHO05D004171 2.8e-08 62.4 122 38.5
TPR.G34052 Trifolium pratense HOM05D003853 ORTHO05D004171 3.7e-08 62.0 109 43.1
AUR62007951 Chenopodium quinoa HOM05D003853 ORTHO05D004171 4.8e-08 61.6 107 40.2
CAN.G1340.8 Capsicum annuum HOM05D003853 ORTHO05D004171 6.3e-08 61.2 77 46.8
MD13G1065700 Malus domestica HOM05D003853 ORTHO05D004171 8.2e-08 60.8 151 32.5
MD16G1064200 Malus domestica HOM05D003853 ORTHO05D004171 8.2e-08 60.8 64 53.1
Psat7g135240 Pisum sativum HOM05D003853 ORTHO05D004171 8.2e-08 60.8 73 50.7
Lalb_Chr17g0341041 Lupinus albus HOM05D003853 ORTHO05D004171 1.1e-07 60.5 86 44.2
Glyma.20G027200 Glycine max HOM05D003853 ORTHO05D004171 1.4e-07 60.1 64 51.6
Sopen05g007410 Solanum pennellii HOM05D003853 ORTHO05D004171 1.4e-07 60.1 122 36.1
TPR.G2267 Trifolium pratense HOM05D003853 ORTHO05D004171 1.8e-07 59.7 114 37.7
ECA246G1290 Erigeron canadensis HOM05D003853 ORTHO05D004171 2.4e-07 59.3 68 51.5
PGSC0003DMG400028384 Solanum tuberosum HOM05D003853 ORTHO05D004171 2.4e-07 59.3 121 35.5
Ca_18813_v3 Cicer arietinum L. HOM05D003853 ORTHO05D004171 3.1e-07 58.9 121 37.2
Solyc05g012570.3 Solanum lycopersicum HOM05D003853 ORTHO05D004171 4.1e-07 58.5 47 59.6
Os10g0330000 Oryza sativa ssp. japonica HOM05D003853 ORTHO05D004171 7.0e-07 57.8 65 49.2
Peaxi162Scf00314g00031 Petunia axillaris HOM05D003853 ORTHO05D004171 7.0e-07 57.8 74 48.6
Lsat_1_v5_gn_3_56161 Lactuca sativa HOM05D003853 ORTHO05D004171 1.2e-06 57.0 70 48.6
Lj2g0020869 Lotus japonicus HOM05D003853 ORTHO05D004171 1.5e-06 56.6 90 43.3
AUR62003131 Chenopodium quinoa HOM05D003853 ORTHO05D004171 2.0e-06 56.2 105 37.1
A08p32170 Brassica napus HOM05D003853 ORTHO05D004171 4.5e-06 55.1 65 43.1
BraA08t35141Z Brassica rapa HOM05D003853 ORTHO05D004171 4.5e-06 55.1 65 43.1
Ca_04944_v3 Cicer arietinum L. HOM05D003853 ORTHO05D004171 4.5e-06 55.1 91 39.6
Medtr4g082830 Medicago truncatula HOM05D003853 ORTHO05D004171 4.5e-06 55.1 66 50.0
TPR.G34063 Trifolium pratense HOM05D003853 ORTHO05D004171 5.9e-06 54.7 77 45.5


User provided reference genes

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