Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cpa.g.sc1.61 Carica papaya HOM05D000088 ORTHO05D002723 3.3e-32 141.0 66 100.0
Duzib268G1625 Durio zibethinus HOM05D000088 ORTHO05D002723 2.8e-15 84.7 42 88.1
Aa31LG1G1030 Aethionema arabicum HOM05D000088 ORTHO05D002723 2.4e-14 81.6 42 83.3
AL1G25840 Arabidopsis lyrata HOM05D000088 ORTHO05D002723 2.4e-14 81.6 42 83.3
AT1G14000 Arabidopsis thaliana HOM05D000088 ORTHO05D002723 2.4e-14 81.6 42 83.3
BcaB08g34352 Brassica carinata HOM05D000088 ORTHO05D002723 2.4e-14 81.6 42 83.3
BcaB08g34353 Brassica carinata HOM05D000088 ORTHO05D002723 2.4e-14 81.6 42 83.3
A09p62570 Brassica napus HOM05D000088 ORTHO05D002723 2.4e-14 81.6 42 83.3
C08p46130 Brassica napus HOM05D000088 ORTHO05D002723 2.4e-14 81.6 42 83.3
BolC8t52163H Brassica oleracea HOM05D000088 ORTHO05D002723 2.4e-14 81.6 42 83.3
BraA09t41620Z Brassica rapa HOM05D000088 ORTHO05D002723 2.4e-14 81.6 42 83.3
CARHR014370 Cardamine hirsuta HOM05D000088 ORTHO05D002723 2.4e-14 81.6 42 83.3
Sp1g12360 Schrenkiella parvula HOM05D000088 ORTHO05D002723 2.4e-14 81.6 42 83.3
Aqoxy3G03481 Aquilegia oxysepala HOM05D000088 ORTHO05D002723 4.1e-14 80.9 43 79.1
A06p10000 Brassica napus HOM05D000088 ORTHO05D002723 5.4e-14 80.5 42 81.0
BraA06t24186Z Brassica rapa HOM05D000088 ORTHO05D002723 5.4e-14 80.5 42 81.0
Duzib248G1678 Durio zibethinus HOM05D000088 ORTHO05D002723 7.0e-14 80.1 42 83.3
Lj2g0027547 Lotus japonicus HOM05D000088 ORTHO05D002723 7.0e-14 80.1 42 78.6
Thhalv10007646m.g Eutrema salsugineum HOM05D000088 ORTHO05D002723 9.2e-14 79.7 42 81.0
Thecc.02G340000 Theobroma cacao HOM05D000088 ORTHO05D002723 9.2e-14 79.7 42 83.3
Gohir.A12G163500 Gossypium hirsutum HOM05D000088 ORTHO05D002723 1.2e-13 79.3 42 81.0
BcaC05g25296 Brassica carinata HOM05D000088 ORTHO05D002723 1.6e-13 79.0 42 78.6
C05p11760 Brassica napus HOM05D000088 ORTHO05D002723 1.6e-13 79.0 42 78.6
BolC5t29922H Brassica oleracea HOM05D000088 ORTHO05D002723 1.6e-13 79.0 42 78.6
Carub.0001s1369 Capsella rubella HOM05D000088 ORTHO05D002723 1.6e-13 79.0 42 78.6
Ciclev10031585m.g Citrus clementina HOM05D000088 ORTHO05D002723 2.0e-13 78.6 42 83.3
TAR374G0898 Trochodendron aralioides HOM05D000088 ORTHO05D002723 2.0e-13 78.6 39 84.6
PGR102G1758 Punica granatum HOM05D000088 ORTHO05D002723 2.7e-13 78.2 40 80.0
TAR622G0409 Trochodendron aralioides HOM05D000088 ORTHO05D002723 2.7e-13 78.2 42 76.2
Lalb_Chr05g0220221 Lupinus albus HOM05D000088 ORTHO05D002723 3.5e-13 77.8 44 72.7
Lalb_Chr09g0329171 Lupinus albus HOM05D000088 ORTHO05D002723 3.5e-13 77.8 44 72.7
Lalb_Chr16g0385661 Lupinus albus HOM05D000088 ORTHO05D002723 3.5e-13 77.8 44 72.7
Atru.chr11.1723 Acer truncatum HOM05D000088 ORTHO05D002723 4.5e-13 77.4 39 84.6
SGA_v2.0_scaffold389G50546 Striga asiatica HOM05D000088 ORTHO05D002723 7.8e-13 76.6 42 76.2
Lj6A784T66 Lonicera japonica HOM05D000088 ORTHO05D002723 1.0e-12 76.3 42 76.2
MSTRG.2333 Avicennia marina HOM05D000088 ORTHO05D002723 1.7e-12 75.5 42 76.2
Ca_23883_v3 Cicer arietinum L. HOM05D000088 ORTHO05D002723 1.7e-12 75.5 42 73.8
Manes.01G033000 Manihot esculenta HOM05D000088 ORTHO05D002723 1.7e-12 75.5 42 78.6
Nn4g23266 Nelumbo nucifera HOM05D000088 ORTHO05D002723 1.7e-12 75.5 42 76.2
TPR.G34086 Trifolium pratense HOM05D000088 ORTHO05D002723 1.7e-12 75.5 42 73.8
arahy.Tifrunner.gnm1.ann1.47C61G Arachis hypogaea HOM05D000088 ORTHO05D002723 2.3e-12 75.1 42 76.2
arahy.Tifrunner.gnm1.ann1.EJ8ZFW Arachis hypogaea HOM05D000088 ORTHO05D002723 2.3e-12 75.1 42 76.2
CiPaw.06G088300 Carya illinoinensis HOM05D000088 ORTHO05D002723 2.3e-12 75.1 42 76.2
Cc11_g12640 Coffea canephora HOM05D000088 ORTHO05D002723 2.3e-12 75.1 42 73.8
Haze_11962 Corylus avellana HOM05D000088 ORTHO05D002723 2.3e-12 75.1 42 76.2
DCAR_007175 Daucus carota HOM05D000088 ORTHO05D002723 2.3e-12 75.1 41 78.0
Oeu021075.6 Olea europaea HOM05D000088 ORTHO05D002723 2.3e-12 75.1 42 76.2
HPP92_016904 Vanilla planifolia HOM05D000088 ORTHO05D002723 2.3e-12 75.1 40 77.5
Cfa008933 Carpinus fangiana HOM05D000088 ORTHO05D002723 2.9e-12 74.7 42 76.2
Sed0015795 Sechium edule HOM05D000088 ORTHO05D002723 2.9e-12 74.7 42 73.8
THA.LOC104801810 Tarenaya hassleriana HOM05D000088 ORTHO05D002723 2.9e-12 74.7 42 73.8
ClCG05G024010 Citrullus lanatus HOM05D000088 ORTHO05D002723 3.9e-12 74.3 43 69.8
CsaV3_5G033030 Cucumis sativus L. HOM05D000088 ORTHO05D002723 3.9e-12 74.3 42 73.8
HanXRQChr17g0545371 Helianthus annuus HOM05D000088 ORTHO05D002723 3.9e-12 74.3 42 76.2
Lj4g0024034 Lotus japonicus HOM05D000088 ORTHO05D002723 3.9e-12 74.3 42 71.4
TWI75G0144 Tripterygium wilfordii HOM05D000088 ORTHO05D002723 3.9e-12 74.3 42 76.2
TWI79G1035 Tripterygium wilfordii HOM05D000088 ORTHO05D002723 3.9e-12 74.3 38 81.6
GSVIVG01003214001 Vitis vinifera HOM05D000088 ORTHO05D002723 3.9e-12 74.3 42 78.6
CSS0044737 Camellia sinensis var. sinensis HOM05D000088 ORTHO05D002723 5.0e-12 73.9 38 78.9
CSS0046870 Camellia sinensis var. sinensis HOM05D000088 ORTHO05D002723 5.0e-12 73.9 38 78.9
COL.COLO4_27980 Corchorus olitorius HOM05D000088 ORTHO05D002723 5.0e-12 73.9 42 76.2
Hma1.2p1_0354F.1_g133840 Hydrangea macrophylla HOM05D000088 ORTHO05D002723 5.0e-12 73.9 42 76.2
Duzib251G0440 Durio zibethinus HOM05D000088 ORTHO05D002723 8.6e-12 73.2 42 78.6
Nn3g17321 Nelumbo nucifera HOM05D000088 ORTHO05D002723 8.6e-12 73.2 42 71.4
Potri.010G164500 Populus trichocarpa HOM05D000088 ORTHO05D002723 8.6e-12 73.2 39 76.9
Rhsim12G0079000 Rhododendron simsii HOM05D000088 ORTHO05D002723 8.6e-12 73.2 42 73.8
ATR0564G423 Amborella trichopoda HOM05D000088 ORTHO05D002723 1.1e-11 72.8 41 78.0
Lsat_1_v5_gn_3_51840 Lactuca sativa HOM05D000088 ORTHO05D002723 1.1e-11 72.8 42 73.8
Manes.05G105800 Manihot esculenta HOM05D000088 ORTHO05D002723 1.1e-11 72.8 42 73.8
Medtr4g082325 Medicago truncatula HOM05D000088 ORTHO05D002723 1.1e-11 72.8 42 71.4
CSS0019856 Camellia sinensis var. sinensis HOM05D000088 ORTHO05D002723 1.5e-11 72.4 42 76.2
CANSAT64G2485 Cannabis sativa HOM05D000088 ORTHO05D002723 1.5e-11 72.4 39 76.9
MELO3C012125.2 Cucumis melo HOM05D000088 ORTHO05D002723 1.5e-11 72.4 42 71.4
CiPaw.05G130000 Carya illinoinensis HOM05D000088 ORTHO05D002723 1.9e-11 72.0 42 73.8
MBI02_g14226_MAGBIO Magnolia biondii HOM05D000088 ORTHO05D002723 1.9e-11 72.0 40 75.0
Potri.008G090800 Populus trichocarpa HOM05D000088 ORTHO05D002723 1.9e-11 72.0 39 76.9
Migut.E00071 Erythranthe guttata HOM05D000088 ORTHO05D002723 2.5e-11 71.6 42 71.4
Hund25210 Selenicereus undatus HOM05D000088 ORTHO05D002723 2.5e-11 71.6 40 72.5
THA.LOC104805177 Tarenaya hassleriana HOM05D000088 ORTHO05D002723 2.5e-11 71.6 41 68.3
THA.LOC104810201 Tarenaya hassleriana HOM05D000088 ORTHO05D002723 2.5e-11 71.6 41 68.3
VMungo1215G0771 Vigna mungo HOM05D000088 ORTHO05D002723 2.5e-11 71.6 42 66.7
Ah.03g134730 Amaranthus hybridus HOM05D000088 ORTHO05D002723 3.3e-11 71.2 40 70.0
DCAR_030994 Daucus carota HOM05D000088 ORTHO05D002723 3.3e-11 71.2 42 69.0
ECA233G4788 Erigeron canadensis HOM05D000088 ORTHO05D002723 3.3e-11 71.2 40 72.5
ECA246G4818 Erigeron canadensis HOM05D000088 ORTHO05D002723 3.3e-11 71.2 52 61.5
AUR62005837 Chenopodium quinoa HOM05D000088 ORTHO05D002723 4.3e-11 70.9 40 70.0
AUR62032831 Chenopodium quinoa HOM05D000088 ORTHO05D002723 4.3e-11 70.9 40 70.0
Glyma.20G031300 Glycine max HOM05D000088 ORTHO05D002723 4.3e-11 70.9 42 69.0
Lj3A1033G51 Lonicera japonica HOM05D000088 ORTHO05D002723 4.3e-11 70.9 40 67.5
Phvul.002G091900 Phaseolus vulgaris HOM05D000088 ORTHO05D002723 4.3e-11 70.9 42 66.7
Psat7g156080 Pisum sativum HOM05D000088 ORTHO05D002723 4.3e-11 70.9 42 69.0
HanXRQChr08g0210651 Helianthus annuus HOM05D000088 ORTHO05D002723 5.6e-11 70.5 40 75.0
Nitab4.5_0004906g0030 Nicotiana tabacum HOM05D000088 ORTHO05D002723 7.3e-11 70.1 42 69.0
Rhsim12G0132900 Rhododendron simsii HOM05D000088 ORTHO05D002723 7.3e-11 70.1 42 71.4
CDE07G0214 Ceratophyllum demersum HOM05D000088 ORTHO05D002723 9.5e-11 69.7 42 71.4
Gorai.005G142900 Gossypium raimondii HOM05D000088 ORTHO05D002723 9.5e-11 69.7 39 76.9
Sabra10G0124900 Salix brachista HOM05D000088 ORTHO05D002723 9.5e-11 69.7 39 69.2
Solyc05g013070.3 Solanum lycopersicum HOM05D000088 ORTHO05D002723 9.5e-11 69.7 42 69.0
Sopen05g007840 Solanum pennellii HOM05D000088 ORTHO05D002723 9.5e-11 69.7 42 69.0
CAN.G964.31 Capsicum annuum HOM05D000088 ORTHO05D002723 1.6e-10 68.9 42 66.7
Nitab4.5_0000391g0280 Nicotiana tabacum HOM05D000088 ORTHO05D002723 2.1e-10 68.6 42 69.0
PGSC0003DMG400028346 Solanum tuberosum HOM05D000088 ORTHO05D002723 2.1e-10 68.6 42 66.7
VMungo0251G2979 Vigna mungo HOM05D000088 ORTHO05D002723 2.1e-10 68.6 42 69.0
Migut.L01250 Erythranthe guttata HOM05D000088 ORTHO05D002723 2.8e-10 68.2 42 69.0
Glyma.07G228000 Glycine max HOM05D000088 ORTHO05D002723 2.8e-10 68.2 42 66.7
MD16G1067600 Malus domestica HOM05D000088 ORTHO05D002723 2.8e-10 68.2 43 72.1
Oeu016240.4 Olea europaea HOM05D000088 ORTHO05D002723 2.8e-10 68.2 42 69.0
Prupe.1G279200 Prunus persica HOM05D000088 ORTHO05D002723 2.8e-10 68.2 43 74.4
Ah.02g129400 Amaranthus hybridus HOM05D000088 ORTHO05D002723 3.6e-10 67.8 41 65.9
Dinv34091 Davidia involucrata HOM05D000088 ORTHO05D002723 3.6e-10 67.8 40 72.5
Peaxi162Scf00222g00246 Petunia axillaris HOM05D000088 ORTHO05D002723 3.6e-10 67.8 42 66.7
Eucgr.B03199 Eucalyptus grandis HOM05D000088 ORTHO05D002723 4.7e-10 67.4 42 66.7
Sabra08G0068200 Salix brachista HOM05D000088 ORTHO05D002723 4.7e-10 67.4 39 69.2
vmacro16350 Vaccinium macrocarpon HOM05D000088 ORTHO05D002723 4.7e-10 67.4 42 64.3
EL10Ac6g13259 Beta vulgaris HOM05D000088 ORTHO05D002723 8.0e-10 66.6 40 65.0
FvH4_4g30780 Fragaria vesca HOM05D000088 ORTHO05D002723 8.0e-10 66.6 42 66.7
PSO478G1272 Papaver somniferum HOM05D000088 ORTHO05D002723 8.0e-10 66.6 42 69.0
PSO063G1164 Papaver somniferum HOM05D000088 ORTHO05D002723 1.0e-09 66.2 41 65.9
PSO063G1877 Papaver somniferum HOM05D000088 ORTHO05D002723 1.0e-09 66.2 41 65.9
PSO198G0068 Papaver somniferum HOM05D000088 ORTHO05D002723 1.0e-09 66.2 41 65.9
SalBow8G2740 Salvia bowleyana HOM05D000088 ORTHO05D002723 1.0e-09 66.2 42 64.3
FAN12G3418 Fragaria x ananassa HOM05D000088 ORTHO05D002723 1.8e-09 65.5 42 64.3
Phvul.002G169100 Phaseolus vulgaris HOM05D000088 ORTHO05D002723 1.8e-09 65.5 42 61.9
MSTRG.13430 Avicennia marina HOM05D000088 ORTHO05D002723 3.1e-09 64.7 42 64.3
PSO017G1836 Papaver somniferum HOM05D000088 ORTHO05D002723 4.0e-09 64.3 42 66.7
FAN07G1717 Fragaria x ananassa HOM05D000088 ORTHO05D002723 5.2e-09 63.9 42 64.3
FAN22G1820 Fragaria x ananassa HOM05D000088 ORTHO05D002723 5.2e-09 63.9 42 64.3
DCAR_027439 Daucus carota HOM05D000088 ORTHO05D002723 8.9e-09 63.2 36 63.9
Solyc01g010950.3 Solanum lycopersicum HOM05D000088 ORTHO05D002723 1.5e-08 62.4 40 65.0
Sopen01g006790 Solanum pennellii HOM05D000088 ORTHO05D002723 1.5e-08 62.4 40 65.0
Gohir.D12G166500 Gossypium hirsutum HOM05D000088 ORTHO05D002723 2.6e-08 61.6 31 87.1
Gorai.008G179300 Gossypium raimondii HOM05D000088 ORTHO05D002723 2.6e-08 61.6 31 87.1
arahy.Tifrunner.gnm1.ann1.0QRZ59 Arachis hypogaea HOM05D000088 ORTHO05D002723 4.4e-08 60.8 38 68.4
arahy.Tifrunner.gnm1.ann1.SA054G Arachis hypogaea HOM05D000088 ORTHO05D002723 4.4e-08 60.8 38 68.4
Lj1A953T45 Lonicera japonica HOM05D003313 ORTHO05D002723 1.7e-07 58.9 42 59.5
CAN.G314.4 Capsicum annuum HOM05D000088 ORTHO05D002723 8.3e-07 56.6 40 60.0
Os07g0632800 Oryza sativa ssp. japonica HOM05D000088 ORTHO05D002723 3.2e-06 54.7 37 62.2


User provided reference genes

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