Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cpa.g.sc1.51 Carica papaya HOM05D004340 ORTHO05D014919 3.3e-65 251.5 123 100.0
Haze_11982 Corylus avellana HOM05D004340 ORTHO05D006363 7.9e-35 150.6 100 70.0
Prupe.1G035400 Prunus persica HOM05D004340 ORTHO05D006363 6.7e-34 147.5 100 67.0
QL03p068099 Quercus lobata HOM05D004340 ORTHO05D006363 1.1e-33 146.7 104 62.5
Cfa008953 Carpinus fangiana HOM05D004340 ORTHO05D006363 2.5e-33 145.6 100 69.0
Ciclev10030675m.g Citrus clementina HOM05D004340 ORTHO05D006363 1.3e-32 143.3 105 63.8
VMungo1383G3199 Vigna mungo HOM05D004340 ORTHO05D006363 6.2e-32 141.0 104 65.4
Medtr4g082150 Medicago truncatula HOM05D004340 ORTHO05D006363 1.8e-31 139.4 105 61.9
Atru.chr11.1746 Acer truncatum HOM05D004340 ORTHO05D006363 2.4e-31 139.0 108 63.9
Medtr4g082265 Medicago truncatula HOM05D004340 ORTHO05D006363 3.1e-31 138.7 104 59.6
RcHm_v2.0_Chr4g0439421 Rosa chinensis HOM05D004340 ORTHO05D006363 3.1e-31 138.7 100 61.0
Phvul.001G233800 Phaseolus vulgaris HOM05D004340 ORTHO05D006363 4.0e-31 138.3 104 64.4
Atru.chr10.1247 Acer truncatum HOM05D004340 ORTHO05D006363 6.9e-31 137.5 108 62.0
Dinv16674 Davidia involucrata HOM05D004340 ORTHO05D006363 6.9e-31 137.5 103 61.2
MELO3C002960.2 Cucumis melo HOM05D004340 ORTHO05D006363 9.0e-31 137.1 107 58.9
arahy.Tifrunner.gnm1.ann1.MXBT1J Arachis hypogaea HOM05D004340 ORTHO05D006363 1.2e-30 136.7 103 62.1
GSVIVG01019948001 Vitis vinifera HOM05D004340 ORTHO05D006363 1.2e-30 136.7 105 61.9
TPR.G34046 Trifolium pratense HOM05D004340 ORTHO05D006363 1.5e-30 136.3 105 61.0
Manes.01G034000 Manihot esculenta HOM05D004340 ORTHO05D006363 2.6e-30 135.6 110 58.2
Ca_18821_v3 Cicer arietinum L. HOM05D004340 ORTHO05D006363 7.6e-30 134.0 105 61.0
Ca_29729_v3 Cicer arietinum L. HOM05D004340 ORTHO05D006363 7.6e-30 134.0 105 61.0
MD16G1069200 Malus domestica HOM05D004340 ORTHO05D006363 7.6e-30 134.0 95 65.3
CsaV3_5G025240 Cucumis sativus L. HOM05D004340 ORTHO05D006363 1.0e-29 133.7 101 60.4
TPR.G5981 Trifolium pratense HOM05D004340 ORTHO05D006363 1.0e-29 133.7 105 60.0
TAR629G2604 Trochodendron aralioides HOM05D004340 ORTHO05D006363 1.7e-29 132.9 103 61.2
Glyma.11G220500 Glycine max HOM05D004340 ORTHO05D006363 2.2e-29 132.5 104 60.6
Glyma.18G036900 Glycine max HOM05D004340 ORTHO05D006363 2.2e-29 132.5 104 60.6
arahy.Tifrunner.gnm1.ann1.AR8P07 Arachis hypogaea HOM05D004340 ORTHO05D006363 2.9e-29 132.1 103 60.2
TWI79G0307 Tripterygium wilfordii HOM05D004340 ORTHO05D006363 3.8e-29 131.7 107 61.7
Nn4g23232 Nelumbo nucifera HOM05D004340 ORTHO05D006363 4.9e-29 131.3 97 63.9
FvH4_5g29350 Fragaria vesca HOM05D004340 ORTHO05D006363 1.4e-28 129.8 96 63.5
FAN13G0065 Fragaria x ananassa HOM05D004340 ORTHO05D006363 1.4e-28 129.8 96 63.5
FAN18G2257 Fragaria x ananassa HOM05D004340 ORTHO05D006363 1.4e-28 129.8 96 63.5
FAN04G3196 Fragaria x ananassa HOM05D004340 ORTHO05D006363 3.2e-28 128.6 96 63.5
Lj4g0013877 Lotus japonicus HOM05D004340 ORTHO05D006363 3.2e-28 128.6 85 69.4
PGR102G3073 Punica granatum HOM05D004340 ORTHO05D006363 5.5e-28 127.9 105 56.2
CANSAT64G1884 Cannabis sativa HOM05D004340 ORTHO05D006363 9.3e-28 127.1 97 63.9
Cc11_g12720 Coffea canephora HOM05D004340 ORTHO05D006363 1.2e-27 126.7 105 57.1
AL3G42300 Arabidopsis lyrata HOM05D004340 ORTHO05D006363 1.6e-27 126.3 100 60.0
TPR.G26189 Trifolium pratense HOM05D004340 ORTHO05D006363 1.6e-27 126.3 100 58.0
ClCG09G021920 Citrullus lanatus HOM05D004340 ORTHO05D006363 3.5e-27 125.2 101 55.4
AT2G04660 Arabidopsis thaliana HOM05D004340 ORTHO05D006363 4.6e-27 124.8 96 61.5
Gorai.013G087900 Gossypium raimondii HOM05D004340 ORTHO05D006363 4.6e-27 124.8 96 62.5
Aa31LG10G13720 Aethionema arabicum HOM05D004340 ORTHO05D006363 7.9e-27 124.0 95 61.1
Thecc.02G342300 Theobroma cacao HOM05D004340 ORTHO05D006363 1.0e-26 123.6 90 66.7
Thhalv10027638m.g Eutrema salsugineum HOM05D004340 ORTHO05D006363 1.3e-26 123.2 96 61.5
Gohir.D13G076900 Gossypium hirsutum HOM05D004340 ORTHO05D006363 2.3e-26 122.5 96 62.5
Carub.0003s2628 Capsella rubella HOM05D004340 ORTHO05D006363 3.9e-26 121.7 100 57.0
THA.LOC104801804 Tarenaya hassleriana HOM05D004340 ORTHO05D006363 3.9e-26 121.7 97 60.8
Ah.03g134830 Amaranthus hybridus HOM05D004340 ORTHO05D006363 5.1e-26 121.3 94 66.0
Sed0000698 Sechium edule HOM05D004340 ORTHO05D006363 5.1e-26 121.3 107 55.1
Lj1g0001827 Lotus japonicus HOM05D004340 ORTHO05D006363 6.7e-26 120.9 98 61.2
PSO063G1986 Papaver somniferum HOM05D004340 ORTHO05D006363 8.7e-26 120.6 102 54.9
Sp7g01960 Schrenkiella parvula HOM05D004340 ORTHO05D006363 8.7e-26 120.6 97 59.8
Sc11g0002100 Simmondsia chinensis HOM05D004340 ORTHO05D006363 8.7e-26 120.6 101 52.5
Gohir.A13G077700 Gossypium hirsutum HOM05D004340 ORTHO05D006363 1.1e-25 120.2 91 63.7
Aqoxy3G03456 Aquilegia oxysepala HOM05D004340 ORTHO05D006363 1.5e-25 119.8 89 58.4
Oeu005760.1 Olea europaea HOM05D004340 ORTHO05D006363 1.5e-25 119.8 103 55.3
Rhsim10G0051900 Rhododendron simsii HOM05D004340 ORTHO05D006363 5.7e-25 117.9 99 56.6
Nitab4.5_0004300g0030 Nicotiana tabacum HOM05D004340 ORTHO05D006363 7.4e-25 117.5 101 54.5
Rhsim10G0119600 Rhododendron simsii HOM05D004340 ORTHO05D006363 7.4e-25 117.5 96 55.2
PSO832G0091 Papaver somniferum HOM05D004340 ORTHO05D006363 9.7e-25 117.1 98 56.1
vmacro05308 Vaccinium macrocarpon HOM05D004340 ORTHO05D006363 9.7e-25 117.1 96 56.2
CARHR261990 Cardamine hirsuta HOM05D004340 ORTHO05D006363 1.3e-24 116.7 96 58.3
AUR62005824 Chenopodium quinoa HOM05D004340 ORTHO05D006363 1.6e-24 116.3 97 56.7
AUR62032818 Chenopodium quinoa HOM05D004340 ORTHO05D006363 2.2e-24 115.9 96 57.3
Potri.008G089600 Populus trichocarpa HOM05D004340 ORTHO05D006363 4.8e-24 114.8 115 58.3
Hund25218 Selenicereus undatus HOM05D004340 ORTHO05D006363 8.2e-24 114.0 95 54.7
Peaxi162Scf00222g00716 Petunia axillaris HOM05D004340 ORTHO05D006363 1.4e-23 113.2 99 54.5
vmacro11375 Vaccinium macrocarpon HOM05D004340 ORTHO05D006363 1.8e-23 112.8 98 55.1
EL10Ac6g13244 Beta vulgaris HOM05D004340 ORTHO05D006363 3.1e-23 112.1 101 52.5
Lj3A1035G45 Lonicera japonica HOM05D004340 ORTHO05D006363 3.1e-23 112.1 102 50.0
SalBow2G1648 Salvia bowleyana HOM05D004340 ORTHO05D006363 6.9e-23 110.9 98 54.1
Nitab4.5_0000040g0090 Nicotiana tabacum HOM05D004340 ORTHO05D006363 9.0e-23 110.5 101 51.5
CSS0018825 Camellia sinensis var. sinensis HOM05D004340 ORTHO05D006363 1.5e-22 109.8 101 54.5
MSTRG.717 Avicennia marina HOM05D004340 ORTHO05D006363 2.0e-22 109.4 98 50.0
COL.COLO4_27998 Corchorus olitorius HOM05D004340 ORTHO05D006363 2.0e-22 109.4 86 60.5
Eucgr.I00217 Eucalyptus grandis HOM05D004340 ORTHO05D006363 2.6e-22 109.0 90 53.3
PGSC0003DMG400018437 Solanum tuberosum HOM05D004340 ORTHO05D006363 2.6e-22 109.0 103 51.5
Migut.L01267 Erythranthe guttata HOM05D004340 ORTHO05D006363 5.9e-22 107.8 94 56.4
Solyc05g007750.4 Solanum lycopersicum HOM05D004340 ORTHO05D006363 7.6e-22 107.5 103 50.5
Sopen05g003610 Solanum pennellii HOM05D004340 ORTHO05D006363 7.6e-22 107.5 103 50.5
MBI05_g36411_MAGBIO Magnolia biondii HOM05D004340 ORTHO05D014919 1.7e-21 106.3 128 44.5
Lalb_Chr05g0220261 Lupinus albus HOM05D004340 ORTHO05D014919 2.9e-21 105.5 84 61.9
SGA_v2.0_scaffold172G38951 Striga asiatica HOM05D004340 ORTHO05D006363 2.9e-21 105.5 93 52.7
CAN.G1335.16 Capsicum annuum HOM05D004340 ORTHO05D006363 3.8e-21 105.1 107 50.5
Sabra08G0067000 Salix brachista HOM05D004340 ORTHO05D006363 3.8e-21 105.1 99 60.6
Medtr7g021880 Medicago truncatula HOM05D004340 ORTHO05D006363 8.5e-21 104.0 89 56.2
A04p12890 Brassica napus HOM05D004340 ORTHO05D006363 2.5e-20 102.4 84 56.0
Aqoxy3G02559 Aquilegia oxysepala HOM05D004340 ORTHO05D006363 3.2e-20 102.1 83 57.8
vmacro05169 Vaccinium macrocarpon HOM05D004340 ORTHO05D006363 5.5e-20 101.3 96 52.1
BcaB06g27417 Brassica carinata HOM05D004340 ORTHO05D006363 1.0e-18 97.1 96 51.0
Duzib251G0421 Durio zibethinus HOM05D004340 ORTHO05D006363 1.8e-18 96.3 74 62.2
BcaB05g21922 Brassica carinata HOM05D004340 ORTHO05D006363 3.0e-18 95.5 87 52.9
C04p46590 Brassica napus HOM05D004340 ORTHO05D006363 3.0e-18 95.5 83 57.8
BraA02t04684Z Brassica rapa HOM05D004340 ORTHO05D006363 5.1e-18 94.7 84 54.8
BcaC03g13079 Brassica carinata HOM05D004340 ORTHO05D006363 1.9e-17 92.8 84 53.6
Lsat_1_v5_gn_8_50141 Lactuca sativa HOM05D004340 ORTHO05D006363 1.9e-17 92.8 97 47.4
BraA04t16952Z Brassica rapa HOM05D004340 ORTHO05D006363 7.4e-17 90.9 85 52.9
BolC4t26245H Brassica oleracea HOM05D004340 ORTHO05D006363 9.7e-17 90.5 83 54.2
BolC2t06011H Brassica oleracea HOM05D004340 ORTHO05D006363 2.2e-16 89.4 84 51.2
HanXRQChr12g0362121 Helianthus annuus HOM05D004340 ORTHO05D006363 4.8e-16 88.2 98 44.9
Nn1g04518 Nelumbo nucifera HOM05D004340 ORTHO05D014919 1.1e-15 87.0 67 61.2
SHI21663 Sapria himalayana HOM05D004340 ORTHO05D014919 6.9e-15 84.3 77 50.6
ATR0564G449 Amborella trichopoda HOM05D004340 ORTHO05D006363 9.1e-15 84.0 88 45.5
DCAR_027428 Daucus carota HOM05D004340 ORTHO05D006363 1.5e-14 83.2 101 40.6
BcaC07g37997 Brassica carinata HOM05D004340 ORTHO05D014919 1.3e-13 80.1 70 54.3
Os04g0484800 Oryza sativa ssp. japonica HOM05D004340 ORTHO05D006363 5.0e-13 78.2 82 42.7
Zm00001eb227040 Zea mays HOM05D004340 ORTHO05D006363 6.5e-13 77.8 80 42.5
HPP92_022007 Vanilla planifolia HOM05D004340 ORTHO05D006363 7.2e-12 74.3 84 40.5
HPP92_021921 Vanilla planifolia HOM05D004340 ORTHO05D006363 1.0e-10 70.5 84 39.3
Actinidia33215 Actinidia chinensis HOM05D004340 ORTHO05D006363 1.8e-10 69.7 47 61.7
SEGI_26412 Sequoiadendron giganteum HOM05D004340 ORTHO05D014919 5.1e-10 68.2 91 35.2
BolC8t48379H Brassica oleracea HOM05D004340 ORTHO05D014919 5.7e-09 64.7 54 55.6
HPP92_021922 Vanilla planifolia HOM05D004340 ORTHO05D014919 5.3e-07 58.2 71 39.4
EL10Ac2g03889 Beta vulgaris HOM05D004340 ORTHO05D014919 9.1e-07 57.4 39 61.5
unitig_747.g21183 Utricularia gibba HOM05D004340 ORTHO05D006363 2.0e-06 56.2 75 40.0


User provided reference genes

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