Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cpa.g.sc1.5 Carica papaya HOM05D006963 ORTHO05D008783 0.0e+00 2060.8 1111 100.0
Thecc.09G298600 Theobroma cacao HOM05D006963 ORTHO05D008783 0.0e+00 1158.3 1229 54.8
Manes.04G012900 Manihot esculenta HOM05D006963 ORTHO05D008783 0.0e+00 1122.1 1227 54.9
QL01p015018 Quercus lobata HOM05D006963 ORTHO05D008783 0.0e+00 1117.8 1197 56.3
Ciclev10027698m.g Citrus clementina HOM05D006963 ORTHO05D008783 0.0e+00 1115.9 1228 55.3
Cfa010289 Carpinus fangiana HOM05D006963 ORTHO05D008783 0.0e+00 1112.8 1241 54.4
Gorai.013G259300 Gossypium raimondii HOM05D006963 ORTHO05D008783 0.0e+00 1112.4 1236 53.5
CiPaw.13G122900 Carya illinoinensis HOM05D006963 ORTHO05D008783 0.0e+00 1105.1 1227 55.3
Gohir.A13G223800 Gossypium hirsutum HOM05D006963 ORTHO05D008783 0.0e+00 1104.4 1237 53.1
Duzib168G1517 Durio zibethinus HOM05D006963 ORTHO05D008783 0.0e+00 1102.0 1230 53.2
Atru.chr3.3511 Acer truncatum HOM05D006963 ORTHO05D008783 0.0e+00 1099.7 1228 54.9
Atru.chr3.3517 Acer truncatum HOM05D006963 ORTHO05D008783 0.0e+00 1099.3 1217 55.1
Haze_23703 Corylus avellana HOM05D006963 ORTHO05D008783 0.0e+00 1098.2 1236 53.9
MD03G1129000 Malus domestica HOM05D006963 ORTHO05D008783 0.0e+00 1088.9 1234 53.5
Prupe.6G112700 Prunus persica HOM05D006963 ORTHO05D008783 0.0e+00 1085.1 1212 53.4
Gohir.D13G228600 Gossypium hirsutum HOM05D006963 ORTHO05D008783 1.5e-311 1073.2 1237 52.3
TAR369G1146 Trochodendron aralioides HOM05D006963 ORTHO05D008783 9.8e-310 1067.0 1225 53.5
Potri.009G005300 Populus trichocarpa HOM05D006963 ORTHO05D008783 5.8e-302 1041.2 1232 53.2
FAN21G1782 Fragaria x ananassa HOM05D006963 ORTHO05D008783 1.4e-300 1036.6 1231 51.9
COL.COLO4_19194 Corchorus olitorius HOM05D006963 ORTHO05D008783 1.3e-298 1030.0 1150 52.8
RcHm_v2.0_Chr5g0056861 Rosa chinensis HOM05D006963 ORTHO05D008783 2.3e-298 1029.2 1183 52.6
FvH4_3g30640 Fragaria vesca HOM05D006963 ORTHO05D008783 3.0e-298 1028.9 1195 52.7
FAN16G1993 Fragaria x ananassa HOM05D006963 ORTHO05D008783 4.0e-295 1018.5 1185 52.4
Glyma.13G322000 Glycine max HOM05D006963 ORTHO05D008783 3.4e-294 1015.4 1196 52.3
Sabra09G0002400 Salix brachista HOM05D006963 ORTHO05D008783 7.5e-294 1014.2 1221 51.7
FAN25G3586 Fragaria x ananassa HOM05D006963 ORTHO05D008783 9.2e-292 1007.3 1302 48.8
FAN11G1352 Fragaria x ananassa HOM05D006963 ORTHO05D008783 1.6e-291 1006.5 1284 49.5
CANSAT64G0534 Cannabis sativa HOM05D006963 ORTHO05D008783 4.0e-287 991.9 1246 50.5
Lalb_Chr24g0394941 Lupinus albus HOM05D006963 ORTHO05D008783 4.9e-285 984.9 1226 50.3
Phvul.005G130400 Phaseolus vulgaris HOM05D006963 ORTHO05D008783 1.0e-282 977.2 1208 50.7
VMungo1080G0719 Vigna mungo HOM05D006963 ORTHO05D008783 1.5e-281 973.4 1192 50.8
MELO3C026954.2 Cucumis melo HOM05D006963 ORTHO05D008783 1.9e-281 973.0 1246 48.8
Lj3g0023334 Lotus japonicus HOM05D006963 ORTHO05D008783 1.6e-280 969.9 1176 51.4
vmacro14391 Vaccinium macrocarpon HOM05D006963 ORTHO05D008783 3.6e-280 968.8 1230 49.4
CsaV3_6G014380 Cucumis sativus L. HOM05D006963 ORTHO05D008783 2.6e-278 962.6 1248 49.0
Rhsim01G0210700 Rhododendron simsii HOM05D006963 ORTHO05D008783 2.6e-278 962.6 1223 50.7
Sed0000311 Sechium edule HOM05D006963 ORTHO05D008783 1.7e-277 959.9 1187 49.8
Medtr2g084285 Medicago truncatula HOM05D006963 ORTHO05D008783 3.8e-277 958.7 1231 49.3
arahy.Tifrunner.gnm1.ann1.10EEU4 Arachis hypogaea HOM05D006963 ORTHO05D008783 6.4e-277 958.0 1237 49.4
arahy.Tifrunner.gnm1.ann1.5C5N68 Arachis hypogaea HOM05D006963 ORTHO05D008783 2.4e-276 956.1 1237 49.4
Psat5g253040 Pisum sativum HOM05D006963 ORTHO05D008783 9.3e-276 954.1 1184 50.2
Ca_01706_v3 Cicer arietinum L. HOM05D006963 ORTHO05D008783 7.8e-275 951.0 1172 51.2
Sabra04G0147300 Salix brachista HOM05D006963 ORTHO05D008783 3.0e-274 949.1 1224 50.4
CSS0000606 Camellia sinensis var. sinensis HOM05D006963 ORTHO05D008783 1.3e-272 943.7 1079 54.8
TWI79G0599 Tripterygium wilfordii HOM05D006963 ORTHO05D008783 2.1e-272 943.0 1230 48.6
Cc01_g10290 Coffea canephora HOM05D006963 ORTHO05D008783 5.8e-270 934.9 1258 47.5
ClCG02G021610 Citrullus lanatus HOM05D006963 ORTHO05D008783 5.6e-265 918.3 1305 46.6
Aqoxy1G01103 Aquilegia oxysepala HOM05D006963 ORTHO05D008783 4.5e-262 908.7 1253 45.7
Eucgr.J00389 Eucalyptus grandis HOM05D006963 ORTHO05D008783 5.8e-262 908.3 1177 47.2
TPR.G21046 Trifolium pratense HOM05D006963 ORTHO05D008783 5.5e-260 901.7 1250 46.2
Aa31LG5G7960 Aethionema arabicum HOM05D006963 ORTHO05D008783 1.2e-259 900.6 1228 46.9
DCAR_018766 Daucus carota HOM05D006963 ORTHO05D008783 6.7e-258 894.8 1232 47.2
MBI13_g24960_MAGBIO Magnolia biondii HOM05D006963 ORTHO05D008783 2.4e-255 886.3 1274 45.8
Lj2A1007T38 Lonicera japonica HOM05D006963 ORTHO05D008783 3.1e-255 885.9 963 55.3
AL4G21950 Arabidopsis lyrata HOM05D006963 ORTHO05D008783 6.9e-255 884.8 1222 46.9
Solyc06g074810.3 Solanum lycopersicum HOM05D006963 ORTHO05D008783 1.6e-251 873.6 1256 45.5
PGSC0003DMG400007133 Solanum tuberosum HOM05D006963 ORTHO05D008783 2.1e-251 873.2 1260 45.2
Nitab4.5_0003155g0020 Nicotiana tabacum HOM05D006963 ORTHO05D008783 6.0e-251 871.7 1295 44.6
Sopen06g031250 Solanum pennellii HOM05D006963 ORTHO05D008783 7.4e-249 864.8 1257 45.3
PGR119G1224 Punica granatum HOM05D006963 ORTHO05D008783 1.8e-239 833.6 1218 46.1
PSO339G1013 Papaver somniferum HOM05D006963 ORTHO05D008783 2.9e-237 826.2 1227 44.9
PSO063G0444 Papaver somniferum HOM05D006963 ORTHO05D008783 6.5e-237 825.1 1236 44.7
MSTRG.18703 Avicennia marina HOM05D006963 ORTHO05D008783 9.1e-231 804.7 1194 44.2
CARHR121070 Cardamine hirsuta HOM05D006963 ORTHO05D008783 1.5e-230 803.9 1059 48.8
Sc06g0010790 Simmondsia chinensis HOM05D006963 ORTHO05D008783 1.3e-229 800.8 1202 44.8
ECA248G2820 Erigeron canadensis HOM05D006963 ORTHO05D008783 1.1e-225 787.7 1164 45.1
EL10Ac9g22623 Beta vulgaris HOM05D006963 ORTHO05D008783 4.1e-223 779.2 1246 43.3
GSVIVG01031463001 Vitis vinifera HOM05D006963 ORTHO05D008783 7.0e-223 778.5 1182 44.5
HanXRQChr11g0346501 Helianthus annuus HOM05D006963 ORTHO05D008783 4.7e-219 765.8 1216 43.1
Ah.01g003350 Amaranthus hybridus HOM05D006963 ORTHO05D008783 1.8e-218 763.8 1196 43.3
Nitab4.5_0001163g0050 Nicotiana tabacum HOM05D006963 ORTHO05D008783 1.7e-216 757.3 1292 39.9
Lsat_1_v5_gn_1_64681 Lactuca sativa HOM05D006963 ORTHO05D008783 4.5e-214 749.2 1184 43.8
Peaxi162Scf00114g00812 Petunia axillaris HOM05D006963 ORTHO05D008783 3.2e-212 743.0 1239 40.4
AUR62014974 Chenopodium quinoa HOM05D006963 ORTHO05D008783 4.5e-206 722.6 1088 44.9
AUR62029159 Chenopodium quinoa HOM05D006963 ORTHO05D008783 1.0e-205 721.5 971 47.4
Migut.D02292 Erythranthe guttata HOM05D006963 ORTHO05D008783 2.5e-204 716.8 1177 41.8
Hund08356 Selenicereus undatus HOM05D006963 ORTHO05D008783 1.5e-201 707.6 1263 40.4
CAN.G1432.10 Capsicum annuum HOM05D006963 ORTHO05D008783 8.6e-197 691.8 1175 40.3
SGA_v2.0_scaffold27G11571 Striga asiatica HOM05D006963 ORTHO05D008783 2.5e-196 690.3 1207 39.4
Dinv16225 Davidia involucrata HOM05D006963 ORTHO05D008783 3.3e-188 663.3 769 54.2
Os02g0823800 Oryza sativa ssp. japonica HOM05D006963 ORTHO05D008783 1.1e-178 631.7 1157 38.2
Zm00001eb190880 Zea mays HOM05D006963 ORTHO05D008783 1.7e-176 624.4 1159 37.8
Glyma.12G178700 Glycine max HOM05D006963 ORTHO05D008783 8.3e-176 622.1 757 52.4
ATR0329G003 Amborella trichopoda HOM05D006963 ORTHO05D008783 1.7e-173 614.4 1290 37.6
HPP92_025769 Vanilla planifolia HOM05D006963 ORTHO05D008783 9.9e-161 572.0 970 39.9
Oeu008360.1 Olea europaea HOM05D006963 ORTHO05D008783 7.1e-151 539.3 1004 39.4
TWI79G0699 Tripterygium wilfordii HOM05D006963 ORTHO05D008783 6.2e-139 499.6 821 44.2
SEGI_09379 Sequoiadendron giganteum HOM05D006963 ORTHO05D008783 3.0e-133 480.7 1225 34.0
Cc00_g22940 Coffea canephora HOM05D006963 ORTHO05D008783 9.4e-119 432.6 620 44.4
unitig_899.g15359 Utricularia gibba HOM05D006963 ORTHO05D008783 1.1e-111 409.1 1128 33.0
Dinv16223 Davidia involucrata HOM05D006963 ORTHO05D008783 2.1e-110 404.8 386 56.0
Glyma.12G178600 Glycine max HOM05D006963 ORTHO05D008783 1.3e-104 385.6 400 53.8
Mapoly0011s0199 Marchantia polymorpha HOM05D006963 ORTHO05D008783 5.5e-103 380.2 1198 29.6
CDE04G1589 Ceratophyllum demersum HOM05D006963 ORTHO05D008783 9.1e-98 362.8 596 43.1
Pp3c19_6480 Physcomitrium patens HOM05D006963 ORTHO05D008783 1.3e-91 342.4 1209 29.9
Actinidia20425 Actinidia chinensis HOM05D006963 ORTHO05D008783 6.3e-83 313.5 414 49.8
AagrBONN_evm.TU.Sc2ySwM_344.4789 Anthoceros agrestis HOM05D006963 ORTHO05D008783 1.2e-78 299.3 1094 28.9
SEGI_31087 Sequoiadendron giganteum HOM05D006963 ORTHO05D008783 1.1e-71 276.2 499 38.3
CDE04G0208 Ceratophyllum demersum HOM05D006963 ORTHO05D008783 1.7e-59 235.7 403 37.5
TAR623G1253 Trochodendron aralioides HOM05D006963 ORTHO05D008783 2.9e-43 181.8 201 49.8
CBR_g8254 Chara braunii HOM05D006963 ORTHO05D008783 6.7e-32 144.1 1175 24.0
arahy.Tifrunner.gnm1.ann1.YZCM4H Arachis hypogaea HOM05D006963 ORTHO05D008783 1.3e-30 139.8 267 37.8
arahy.Tifrunner.gnm1.ann1.WJC7CQ Arachis hypogaea HOM05D006963 ORTHO05D008783 4.9e-27 127.9 263 35.4
TAR623G0981 Trochodendron aralioides HOM05D006963 ORTHO05D008783 3.2e-26 125.2 86 66.3
Psat0s1214g0160 Pisum sativum HOM05D006963 ORTHO05D008783 3.5e-25 121.7 92 60.9
SEGI_19036 Sequoiadendron giganteum HOM05D006963 ORTHO05D008783 6.7e-24 117.5 96 58.3
Dinv29380 Davidia involucrata HOM05D006963 ORTHO05D008783 9.6e-23 113.6 119 48.7
CAN.G1432.11 Capsicum annuum HOM05D006963 ORTHO05D008783 9.0e-21 107.1 74 68.9
TAR623G0866 Trochodendron aralioides HOM05D006963 ORTHO05D008783 9.0e-21 107.1 83 56.6
CSS0014134 Camellia sinensis var. sinensis HOM05D006963 ORTHO05D008783 7.6e-20 104.0 170 41.8
Nn2g13854 Nelumbo nucifera HOM05D006963 ORTHO05D008783 3.2e-18 98.6 122 45.9
Oeu008361.1 Olea europaea HOM05D006963 ORTHO05D008783 3.3e-15 88.6 145 37.9
Pp3c7_26050 Physcomitrium patens HOM05D006963 ORTHO05D008783 3.6e-09 68.6 74 43.2
TAR629G2211 Trochodendron aralioides HOM05D002089 ORTHO05D022294 3.3e-07 62.0 81 44.4


User provided reference genes

Program Settings