Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cpa.g.sc1.409 Carica papaya HOM05D005838 ORTHO05D007177 6.4e-76 287.3 147 100.0
THA.LOC104827330 Tarenaya hassleriana HOM05D005838 ORTHO05D007177 1.2e-29 133.7 88 80.7
Aa31sc79G70 Aethionema arabicum HOM05D005838 ORTHO05D007177 4.5e-29 131.7 88 78.4
Carub.0003s1186 Capsella rubella HOM05D005838 ORTHO05D007177 2.2e-28 129.4 88 78.4
CARHR087030 Cardamine hirsuta HOM05D005838 ORTHO05D007177 1.1e-27 127.1 88 76.1
AL3G24160 Arabidopsis lyrata HOM05D005838 ORTHO05D007177 1.9e-27 126.3 88 77.3
Thhalv10021517m.g Eutrema salsugineum HOM05D005838 ORTHO05D007177 1.9e-27 126.3 88 76.1
Sp3g10660 Schrenkiella parvula HOM05D005838 ORTHO05D007177 1.9e-27 126.3 88 76.1
AT3G12530 Arabidopsis thaliana HOM05D005838 ORTHO05D007177 5.5e-27 124.8 88 76.1
BraA03t12920Z Brassica rapa HOM05D005838 ORTHO05D007177 4.7e-26 121.7 88 75.0
BolC3t16845H Brassica oleracea HOM05D005838 ORTHO05D007177 1.4e-25 120.2 88 73.9
Gohir.A10G219500 Gossypium hirsutum HOM05D005838 ORTHO05D007177 1.5e-24 116.7 88 72.7
Gohir.D10G229000 Gossypium hirsutum HOM05D005838 ORTHO05D007177 1.5e-24 116.7 88 72.7
Gorai.011G261500 Gossypium raimondii HOM05D005838 ORTHO05D007177 1.5e-24 116.7 88 72.7
A03p37670 Brassica napus HOM05D005838 ORTHO05D007177 2.6e-24 115.9 82 74.4
C03p45720 Brassica napus HOM05D005838 ORTHO05D007177 3.4e-24 115.5 82 74.4
Thecc.10G041400 Theobroma cacao HOM05D005838 ORTHO05D007177 5.7e-24 114.8 88 72.7
Duzib114G0236 Durio zibethinus HOM05D005838 ORTHO05D007177 1.3e-23 113.6 87 71.3
BcaB04g21071 Brassica carinata HOM05D005838 ORTHO05D007177 8.3e-23 110.9 92 70.7
COL.COLO4_15048 Corchorus olitorius HOM05D005838 ORTHO05D007177 2.4e-22 109.4 118 55.9
arahy.Tifrunner.gnm1.ann1.5TUK4V Arachis hypogaea HOM05D005838 ORTHO05D007177 3.5e-21 105.5 88 68.2
Duzib128G0804 Durio zibethinus HOM05D005838 ORTHO05D007177 5.9e-21 104.8 87 66.7
Ciclev10033314m.g Citrus clementina HOM05D005838 ORTHO05D007177 1.0e-20 104.0 80 70.0
Ca_24072_v3 Cicer arietinum L. HOM05D005838 ORTHO05D007177 1.3e-20 103.6 88 68.2
TPR.G2804 Trifolium pratense HOM05D005838 ORTHO05D007177 2.9e-20 102.4 88 67.0
C05p55400 Brassica napus HOM05D005838 ORTHO05D007177 5.0e-20 101.7 77 68.8
arahy.Tifrunner.gnm1.ann1.3RZV8E Arachis hypogaea HOM05D005838 ORTHO05D007177 6.6e-20 101.3 83 68.7
arahy.Tifrunner.gnm1.ann1.9R8UEA Arachis hypogaea HOM05D005838 ORTHO05D007177 6.6e-20 101.3 83 68.7
arahy.Tifrunner.gnm1.ann1.YA5U61 Arachis hypogaea HOM05D005838 ORTHO05D007177 6.6e-20 101.3 83 68.7
BolC5t34206H Brassica oleracea HOM05D005838 ORTHO05D007177 6.6e-20 101.3 82 67.1
Glyma.16G058300 Glycine max HOM05D005838 ORTHO05D007177 1.1e-19 100.5 88 65.9
Atru.chr12.445 Acer truncatum HOM05D005838 ORTHO05D007177 1.5e-19 100.1 92 63.0
Ca_13046_v3 Cicer arietinum L. HOM05D006351 ORTHO05D007796 2.5e-19 99.4 83 68.7
QL08p059697 Quercus lobata HOM05D005838 ORTHO05D007177 2.5e-19 99.4 88 64.8
VMungo1383G0749 Vigna mungo HOM05D005838 ORTHO05D007177 2.5e-19 99.4 88 65.9
Medtr7g029455 Medicago truncatula HOM05D005838 ORTHO05D007177 3.3e-19 99.0 90 64.4
Phvul.001G114700 Phaseolus vulgaris HOM05D005838 ORTHO05D007177 3.3e-19 99.0 88 64.8
Lj1g0024127 Lotus japonicus HOM05D005838 ORTHO05D007177 5.5e-19 98.2 79 67.1
CiPaw.01G287700 Carya illinoinensis HOM05D005838 ORTHO05D007177 7.2e-19 97.8 88 65.9
Lalb_Chr22g0360471 Lupinus albus HOM05D005838 ORTHO05D007177 7.2e-19 97.8 83 67.5
MBI14_g35405_MAGBIO Magnolia biondii HOM05D005838 ORTHO05D007177 7.2e-19 97.8 92 65.2
Haze_17070 Corylus avellana HOM05D005838 ORTHO05D007177 2.1e-18 96.3 83 63.9
FAN06G0860 Fragaria x ananassa HOM05D005838 ORTHO05D007177 2.1e-18 96.3 89 64.0
FAN06G0984 Fragaria x ananassa HOM05D005838 ORTHO05D007177 2.1e-18 96.3 89 64.0
FAN10G2643 Fragaria x ananassa HOM05D005838 ORTHO05D007177 2.8e-18 95.9 89 64.0
RcHm_v2.0_Chr1g0367201 Rosa chinensis HOM05D005838 ORTHO05D007177 2.8e-18 95.9 89 64.0
HPP92_027375 Vanilla planifolia HOM05D005838 ORTHO05D007177 3.6e-18 95.5 89 65.2
TAR623G0537 Trochodendron aralioides HOM05D005838 ORTHO05D007177 4.7e-18 95.1 92 63.0
FvH4_7g22520 Fragaria vesca HOM05D005838 ORTHO05D007177 6.1e-18 94.7 89 62.9
FAN01G2297 Fragaria x ananassa HOM05D005838 ORTHO05D007177 1.4e-17 93.6 83 62.7
Hund16085 Selenicereus undatus HOM05D005838 ORTHO05D007177 1.4e-17 93.6 89 64.0
TAR369G1142 Trochodendron aralioides HOM05D005838 ORTHO05D007177 1.4e-17 93.6 62 77.4
EL10Ac2g04744 Beta vulgaris HOM05D005838 ORTHO05D007177 2.3e-17 92.8 76 68.4
CDE04G0192 Ceratophyllum demersum HOM05D005838 ORTHO05D007177 2.3e-17 92.8 89 61.8
PSO541G0023 Papaver somniferum HOM05D005838 ORTHO05D007177 2.3e-17 92.8 88 61.4
FAN01G2632 Fragaria x ananassa HOM05D005838 ORTHO05D007177 3.0e-17 92.4 83 61.4
Os01g0248600 Oryza sativa ssp. japonica HOM05D005838 ORTHO05D007177 3.0e-17 92.4 89 60.7
Sc11g0007930 Simmondsia chinensis HOM05D005838 ORTHO05D007177 3.0e-17 92.4 89 61.8
AUR62012091 Chenopodium quinoa HOM05D005838 ORTHO05D007177 6.8e-17 91.3 83 61.4
AUR62039375 Chenopodium quinoa HOM05D005838 ORTHO05D007177 6.8e-17 91.3 83 61.4
FAN03G0424 Fragaria x ananassa HOM05D005838 ORTHO05D007177 6.8e-17 91.3 83 61.4
CANSAT78G0186 Cannabis sativa HOM05D005838 ORTHO05D007177 8.9e-17 90.9 94 59.6
Aqoxy6G01179 Aquilegia oxysepala HOM05D005838 ORTHO05D007177 1.2e-16 90.5 89 60.7
MD01G1134500 Malus domestica HOM05D005838 ORTHO05D007177 1.2e-16 90.5 90 61.1
Aqoxy3G02271 Aquilegia oxysepala HOM05D005838 ORTHO05D007177 1.5e-16 90.1 89 61.8
PSO339G6019 Papaver somniferum HOM05D005838 ORTHO05D007177 1.5e-16 90.1 88 60.2
CsaV3_4G009680 Cucumis sativus L. HOM05D005838 ORTHO05D007177 2.0e-16 89.7 90 60.0
Nn1g07214 Nelumbo nucifera HOM05D005838 ORTHO05D007177 2.0e-16 89.7 92 62.0
GSVIVG01024370001 Vitis vinifera HOM05D005838 ORTHO05D007177 2.6e-16 89.4 88 63.6
Dinv03043 Davidia involucrata HOM05D005838 ORTHO05D007177 5.7e-16 88.2 87 62.1
MD07G1199100 Malus domestica HOM05D005838 ORTHO05D007177 5.7e-16 88.2 90 58.9
Zm00001eb331580 Zea mays HOM05D005838 ORTHO05D007177 5.7e-16 88.2 89 59.6
Rhsim09G0166200 Rhododendron simsii HOM05D005838 ORTHO05D007177 7.5e-16 87.8 143 42.7
ATR0579G085 Amborella trichopoda HOM05D005838 ORTHO05D007177 9.8e-16 87.4 88 58.0
Dinv26018 Davidia involucrata HOM05D005838 ORTHO05D007177 2.2e-15 86.3 87 60.9
vmacro10230 Vaccinium macrocarpon HOM05D005838 ORTHO05D007177 2.8e-15 85.9 79 62.0
MELO3C024840.2 Cucumis melo HOM05D005838 ORTHO05D007177 3.7e-15 85.5 90 61.1
DCAR_011703 Daucus carota HOM05D005838 ORTHO05D007177 3.7e-15 85.5 83 60.2
TWI34G1817 Tripterygium wilfordii HOM05D005838 ORTHO05D007177 4.9e-15 85.1 89 58.4
Manes.07G116600 Manihot esculenta HOM05D005838 ORTHO05D007177 6.3e-15 84.7 87 55.2
Sed0000199 Sechium edule HOM05D005838 ORTHO05D007177 6.3e-15 84.7 90 60.0
Sabra10G0157100 Salix brachista HOM05D005838 ORTHO05D007177 1.1e-14 84.0 88 54.5
Potri.010G203600 Populus trichocarpa HOM05D005838 ORTHO05D007177 1.4e-14 83.6 88 54.5
Eucgr.J00011 Eucalyptus grandis HOM05D005838 ORTHO05D007177 1.8e-14 83.2 90 58.9
Hma1.2p1_0405F.1_g145680 Hydrangea macrophylla HOM05D005838 ORTHO05D007177 1.8e-14 83.2 88 59.1
Prupe.2G235900 Prunus persica HOM05D005838 ORTHO05D007177 2.4e-14 82.8 90 56.7
CSS0040522 Camellia sinensis var. sinensis HOM05D005838 ORTHO05D007177 3.1e-14 82.4 88 56.8
MSTRG.287 Avicennia marina HOM05D005838 ORTHO05D007177 7.0e-14 81.3 90 54.4
Lj8A84T88 Lonicera japonica HOM05D005838 ORTHO05D007177 7.0e-14 81.3 83 56.6
SGA_v2.0_scaffold2G01002 Striga asiatica HOM05D005838 ORTHO05D007177 1.6e-13 80.1 90 53.3
Cc02_g07820 Coffea canephora HOM05D005838 ORTHO05D007177 2.7e-13 79.3 90 53.3
Lsat_1_v5_gn_1_78580 Lactuca sativa HOM05D005838 ORTHO05D007177 2.7e-13 79.3 88 51.1
SalBow6G6757 Salvia bowleyana HOM05D005838 ORTHO05D007177 1.0e-12 77.4 89 51.7
Oeu064376.1 Olea europaea HOM05D005838 ORTHO05D007177 1.3e-12 77.0 90 52.2
SMO358G0240 Selaginella moellendorffii HOM05D005838 ORTHO05D007177 2.3e-12 76.3 62 64.5
Nitab4.5_0025932g0010 Nicotiana tabacum HOM05D005838 ORTHO05D007177 5.0e-12 75.1 81 53.1
SEGI_05999 Sequoiadendron giganteum HOM05D005838 ORTHO05D007177 5.0e-12 75.1 89 53.9
Solyc05g054430.4 Solanum lycopersicum HOM05D005838 ORTHO05D007177 5.0e-12 75.1 81 53.1
Sopen05g032920 Solanum pennellii HOM05D005838 ORTHO05D007177 5.0e-12 75.1 81 53.1
PGSC0003DMG402023533 Solanum tuberosum HOM05D005838 ORTHO05D007177 5.0e-12 75.1 81 53.1
CAN.G1013.29 Capsicum annuum HOM05D005838 ORTHO05D007177 6.6e-12 74.7 80 53.8
Migut.M01657 Erythranthe guttata HOM05D005838 ORTHO05D007177 8.6e-12 74.3 89 52.8
HanXRQChr14g0458031 Helianthus annuus HOM05D005838 ORTHO05D007177 1.1e-11 73.9 87 50.6
ECA236G5038 Erigeron canadensis HOM05D005838 ORTHO05D007177 1.9e-11 73.2 87 49.4
ECA238G0467 Erigeron canadensis HOM05D005838 ORTHO05D007177 4.3e-11 72.0 87 48.3
HanXRQChr17g0562051 Helianthus annuus HOM05D005838 ORTHO05D007177 4.3e-11 72.0 87 49.4
Peaxi162Scf00886g00023 Petunia axillaris HOM05D005838 ORTHO05D007177 5.6e-11 71.6 81 51.9
Nitab4.5_0008565g0020 Nicotiana tabacum HOM05D005838 ORTHO05D007177 1.2e-10 70.5 90 51.1
Mapoly0001s0197 Marchantia polymorpha HOM05D005838 ORTHO05D007177 2.1e-10 69.7 91 48.4
Pp3c24_19790 Physcomitrium patens HOM05D005838 ORTHO05D007177 8.0e-10 67.8 91 49.5
BraA05t22495Z Brassica rapa HOM05D005838 ORTHO05D007177 8.9e-09 64.3 47 66.0
CBR_g83733 Chara braunii HOM05D005838 ORTHO05D007177 7.5e-08 61.2 94 41.5
BNapus_Darmor_BZH_scaffold_149p00070 Brassica napus HOM05D005838 ORTHO05D041122 1.4e-06 57.0 54 59.3


User provided reference genes

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