Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cpa.g.sc1.377 Carica papaya HOM05D004065 ORTHO05D004806 3.2e-199 698.4 388 100.0
COL.COLO4_14967 Corchorus olitorius HOM05D004065 ORTHO05D004806 7.2e-151 537.7 398 77.1
Thecc.10G046900 Theobroma cacao HOM05D004065 ORTHO05D004806 3.6e-150 535.4 396 76.8
Atru.chr12.508 Acer truncatum HOM05D004065 ORTHO05D004806 1.0e-149 533.9 395 73.4
Gorai.012G069700 Gossypium raimondii HOM05D004065 ORTHO05D004806 3.0e-149 532.3 393 75.1
Gohir.D04G062400 Gossypium hirsutum HOM05D004065 ORTHO05D004806 1.2e-148 530.4 393 74.8
Ciclev10030542m.g Citrus clementina HOM05D004065 ORTHO05D004806 1.7e-147 526.6 390 74.1
TWI38G1478 Tripterygium wilfordii HOM05D004065 ORTHO05D004806 2.2e-147 526.2 387 75.2
Gohir.A05G350100 Gossypium hirsutum HOM05D004065 ORTHO05D004806 6.3e-147 524.6 393 75.3
Duzib114G0580 Durio zibethinus HOM05D004065 ORTHO05D004806 2.0e-145 519.6 419 70.4
Gohir.A10G215800 Gossypium hirsutum HOM05D004065 ORTHO05D004806 1.7e-144 516.5 396 73.2
Gorai.011G255800 Gossypium raimondii HOM05D004065 ORTHO05D004806 2.9e-144 515.8 396 73.0
TWI15G0503 Tripterygium wilfordii HOM05D004065 ORTHO05D004806 8.6e-144 514.2 390 74.4
THA.LOC104799352 Tarenaya hassleriana HOM05D004065 ORTHO05D004806 5.5e-143 511.5 387 72.9
MELO3C023859.2 Cucumis melo HOM05D004065 ORTHO05D004806 1.2e-142 510.4 386 72.0
QL08p059051 Quercus lobata HOM05D004065 ORTHO05D004806 2.8e-142 509.2 412 70.1
CsaV3_5G008100 Cucumis sativus L. HOM05D004065 ORTHO05D004806 4.7e-142 508.4 386 71.8
Gohir.D10G224800 Gossypium hirsutum HOM05D004065 ORTHO05D004806 2.3e-141 506.1 396 72.2
Hma1.2p1_0727F.1_g209200 Hydrangea macrophylla HOM05D004065 ORTHO05D004806 2.3e-141 506.1 385 71.7
Cfa001505 Carpinus fangiana HOM05D004065 ORTHO05D004806 3.0e-141 505.8 393 71.5
Dinv25990 Davidia involucrata HOM05D004065 ORTHO05D004806 2.6e-140 502.7 385 71.9
Sed0019555 Sechium edule HOM05D004065 ORTHO05D004806 5.4e-138 495.0 385 70.4
Dinv31435 Davidia involucrata HOM05D004065 ORTHO05D004806 1.2e-137 493.8 385 70.9
Thhalv10019927m.g Eutrema salsugineum HOM05D004065 ORTHO05D004806 1.2e-137 493.8 387 71.3
FvH4_7g21970 Fragaria vesca HOM05D004065 ORTHO05D004806 1.3e-136 490.3 391 67.3
Potri.010G207900 Populus trichocarpa HOM05D004065 ORTHO05D004806 2.3e-136 489.6 386 71.2
CiPaw.01G284400 Carya illinoinensis HOM05D004065 ORTHO05D004806 7.3e-135 484.6 395 68.4
BcaB04g21060 Brassica carinata HOM05D004065 ORTHO05D004806 1.2e-134 483.8 389 69.9
BolC1t05197H Brassica oleracea HOM05D004065 ORTHO05D004806 1.2e-134 483.8 389 69.9
BcaB04g21053 Brassica carinata HOM05D004065 ORTHO05D004806 3.6e-134 482.3 389 69.7
BNapus_Darmor_BZH_scaffold_149p00120 Brassica napus HOM05D004065 ORTHO05D004806 3.6e-134 482.3 389 69.4
BraA01t04124Z Brassica rapa HOM05D004065 ORTHO05D004806 3.6e-134 482.3 389 69.4
C01p52580 Brassica napus HOM05D004065 ORTHO05D004806 6.1e-134 481.5 389 69.7
Duzib106G1820 Durio zibethinus HOM05D004065 ORTHO05D004806 6.1e-134 481.5 398 68.8
AT3G12590 Arabidopsis thaliana HOM05D004065 ORTHO05D004806 1.8e-133 479.9 387 69.3
CANSAT56G4002 Cannabis sativa HOM05D004065 ORTHO05D004806 4.0e-133 478.8 395 68.1
SalBow6G0580 Salvia bowleyana HOM05D004065 ORTHO05D004806 4.0e-133 478.8 386 67.4
CARHR087100 Cardamine hirsuta HOM05D004065 ORTHO05D004806 5.2e-133 478.4 387 68.7
AL3G24260 Arabidopsis lyrata HOM05D004065 ORTHO05D004806 3.4e-132 475.7 387 68.7
Manes.10G033000 Manihot esculenta HOM05D004065 ORTHO05D004806 7.5e-132 474.6 391 68.5
Actinidia13867 Actinidia chinensis HOM05D004065 ORTHO05D004806 1.7e-131 473.4 386 68.1
Cc02_g08160 Coffea canephora HOM05D004065 ORTHO05D004806 1.4e-130 470.3 384 67.2
Nn2g10418 Nelumbo nucifera HOM05D004065 ORTHO05D004806 5.4e-130 468.4 388 66.8
Carub.0003s1194 Capsella rubella HOM05D004065 ORTHO05D004806 1.6e-129 466.8 387 68.2
MSTRG.8235 Avicennia marina HOM05D004065 ORTHO05D004806 1.0e-128 464.2 382 65.4
DCAR_019167 Daucus carota HOM05D004065 ORTHO05D004806 1.3e-128 463.8 386 65.5
Aa31LG3G60 Aethionema arabicum HOM05D004065 ORTHO05D004806 8.6e-128 461.1 387 66.9
HanXRQChr07g0201231 Helianthus annuus HOM05D004065 ORTHO05D004806 4.3e-127 458.8 388 66.0
A03p37690 Brassica napus HOM05D000062 ORTHO05D004806 2.8e-126 456.1 386 66.8
BraA03t12924Z Brassica rapa HOM05D004065 ORTHO05D004806 2.8e-126 456.1 386 66.8
SGA_v2.0_scaffold2G00996 Striga asiatica HOM05D004065 ORTHO05D004806 2.8e-126 456.1 385 65.7
TAR633G2080 Trochodendron aralioides HOM05D004065 ORTHO05D004806 6.2e-126 454.9 388 66.5
CSS0036524 Camellia sinensis var. sinensis HOM05D004065 ORTHO05D004806 1.1e-125 454.1 384 67.4
FAN06G3757 Fragaria x ananassa HOM05D004065 ORTHO05D004806 1.1e-125 454.1 408 62.3
Eucgr.G02920 Eucalyptus grandis HOM05D004065 ORTHO05D004806 3.1e-125 452.6 397 63.0
Sc20g0002620 Simmondsia chinensis HOM05D004065 ORTHO05D004806 5.2e-125 451.8 387 67.4
ClCG07G003370 Citrullus lanatus HOM05D004065 ORTHO05D004806 6.8e-125 451.4 528 53.0
Sabra10G0160500 Salix brachista HOM05D004065 ORTHO05D004806 6.8e-125 451.4 387 66.7
FAN01G1867 Fragaria x ananassa HOM05D004065 ORTHO05D004806 8.9e-125 451.1 408 62.0
Lsat_1_v5_gn_2_117761 Lactuca sativa HOM05D004065 ORTHO05D004806 1.2e-124 450.7 388 66.2
FAN10G0299 Fragaria x ananassa HOM05D004065 ORTHO05D004806 1.5e-124 450.3 408 61.8
Sp3g10730 Schrenkiella parvula HOM05D004065 ORTHO05D004806 2.0e-124 449.9 387 65.9
FAN06G3343 Fragaria x ananassa HOM05D004065 ORTHO05D004806 4.4e-124 448.7 408 61.8
ECA238G1619 Erigeron canadensis HOM05D004065 ORTHO05D004806 1.7e-123 446.8 388 65.5
Haze_17038 Corylus avellana HOM05D004065 ORTHO05D004806 4.9e-123 445.3 404 64.1
EL10Ac2g03418 Beta vulgaris HOM05D004065 ORTHO05D004806 6.4e-123 444.9 409 62.3
Sopen06g010560 Solanum pennellii HOM05D004065 ORTHO05D004806 1.4e-122 443.7 395 62.8
GSVIVG01016585001 Vitis vinifera HOM05D004065 ORTHO05D004806 1.0e-120 437.6 386 63.2
Migut.F01518 Erythranthe guttata HOM05D004065 ORTHO05D004806 2.3e-120 436.4 386 63.2
BcaC01g04018 Brassica carinata HOM05D004065 ORTHO05D004806 1.5e-119 433.7 387 65.1
C03p45740 Brassica napus HOM05D000062 ORTHO05D004806 1.5e-119 433.7 387 65.1
MD01G1124000 Malus domestica HOM05D004065 ORTHO05D004806 9.5e-119 431.0 323 70.6
Rhsim09G0164300 Rhododendron simsii HOM05D004065 ORTHO05D004806 6.2e-118 428.3 437 57.4
Potri.008G052700 Populus trichocarpa HOM05D004065 ORTHO05D004806 8.1e-118 427.9 386 65.5
MD07G1194200 Malus domestica HOM05D004065 ORTHO05D004806 1.8e-117 426.8 323 70.3
Glyma.02G093600 Glycine max HOM05D004065 ORTHO05D004806 8.9e-117 424.5 370 65.1
BolC3t16849H Brassica oleracea HOM05D004065 ORTHO05D004806 1.2e-116 424.1 387 64.6
Lj1g0007112 Lotus japonicus HOM05D004065 ORTHO05D004806 1.7e-115 420.2 371 63.9
arahy.Tifrunner.gnm1.ann1.P8VZLW Arachis hypogaea HOM05D004065 ORTHO05D004806 2.2e-115 419.9 394 61.2
arahy.Tifrunner.gnm1.ann1.XU51RJ Arachis hypogaea HOM05D004065 ORTHO05D004806 2.2e-115 419.9 394 61.2
RcHm_v2.0_Chr1g0366301 Rosa chinensis HOM05D004065 ORTHO05D004806 2.9e-115 419.5 390 60.0
Prupe.2G231600 Prunus persica HOM05D004065 ORTHO05D004806 1.1e-114 417.5 388 65.2
Glyma.18G288500 Glycine max HOM05D004065 ORTHO05D004806 1.9e-114 416.8 393 62.3
Aqoxy2G02042 Aquilegia oxysepala HOM05D004065 ORTHO05D004806 7.8e-113 411.4 388 60.1
Lalb_Chr04g0257821 Lupinus albus HOM05D004065 ORTHO05D004806 6.6e-112 408.3 363 64.2
AUR62038371 Chenopodium quinoa HOM05D004065 ORTHO05D004806 1.1e-111 407.5 395 60.0
LjContig00357g0027530 Lotus japonicus HOM05D004065 ORTHO05D004806 1.1e-111 407.5 384 59.6
Phvul.008G013500 Phaseolus vulgaris HOM05D004065 ORTHO05D004806 1.5e-111 407.1 393 60.8
Ah.16g107250 Amaranthus hybridus HOM05D004065 ORTHO05D004806 8.1e-110 401.4 490 52.4
Medtr7g024190 Medicago truncatula HOM05D004065 ORTHO05D004806 2.4e-109 399.8 374 62.0
Glyma.10G289700 Glycine max HOM05D004065 ORTHO05D004806 4.0e-109 399.1 372 61.6
FvH4_7g22001 Fragaria vesca HOM05D004065 ORTHO05D004806 8.9e-109 397.9 311 66.6
Lalb_Chr06g0164301 Lupinus albus HOM05D004065 ORTHO05D004806 1.2e-108 397.5 384 60.4
Glyma.20G099500 Glycine max HOM05D004065 ORTHO05D004806 2.0e-108 396.7 362 62.2
Psat6g236080 Pisum sativum HOM05D004065 ORTHO05D004806 3.4e-108 396.0 374 60.4
Ca_07234_v3 Cicer arietinum L. HOM05D004065 ORTHO05D004806 5.4e-106 388.7 371 62.0
FAN03G1397 Fragaria x ananassa HOM05D004065 ORTHO05D004806 1.0e-104 384.4 334 62.6
AUR62040961 Chenopodium quinoa HOM05D004065 ORTHO05D004806 2.1e-102 376.7 312 65.1
FAN01G2126 Fragaria x ananassa HOM05D004065 ORTHO05D004806 2.4e-101 373.2 285 67.4
Psat3g180760 Pisum sativum HOM05D004065 ORTHO05D004806 4.9e-99 365.5 374 59.6
PSO339G3310 Papaver somniferum HOM05D004065 ORTHO05D004806 1.1e-98 364.4 324 60.8
TPR.G15495 Trifolium pratense HOM05D004065 ORTHO05D004806 6.9e-93 345.1 354 59.0
DCAR_015196 Daucus carota HOM05D004065 ORTHO05D004806 5.8e-92 342.0 387 54.0
PGR142G1305 Punica granatum HOM05D004065 ORTHO05D004806 7.6e-92 341.7 314 59.6
Lj8C86G13 Lonicera japonica HOM05D004065 ORTHO05D004806 1.7e-91 340.5 270 70.4
Solyc06g042960.3 Solanum lycopersicum HOM05D004065 ORTHO05D004806 4.2e-90 335.9 270 65.9
Nitab4.5_0005137g0010 Nicotiana tabacum HOM05D004065 ORTHO05D004806 2.1e-89 333.6 269 65.8
Nitab4.5_0001836g0030 Nicotiana tabacum HOM05D004065 ORTHO05D004806 2.7e-89 333.2 269 65.4
ATR0559G344 Amborella trichopoda HOM05D004065 ORTHO05D004806 1.3e-83 314.3 377 52.0
Peaxi162Scf00658g00725 Petunia axillaris HOM05D004065 ORTHO05D004806 5.7e-79 298.9 245 65.7
Nn8g40630 Nelumbo nucifera HOM05D004065 ORTHO05D004806 3.4e-76 289.7 244 63.9
CiPaw.02G182500 Carya illinoinensis HOM05D004065 ORTHO05D004806 1.6e-73 280.8 209 71.8
unitig_26.g10019 Utricularia gibba HOM05D004065 ORTHO05D004806 2.1e-73 280.4 316 51.3
SEGI_35631 Sequoiadendron giganteum HOM05D004065 ORTHO05D004806 3.0e-72 276.6 387 47.5
Hma1.2p1_1137F.1_g260730 Hydrangea macrophylla HOM05D004065 ORTHO05D004806 1.6e-70 270.8 203 70.4
Oeu016023.5 Olea europaea HOM05D004065 ORTHO05D004806 2.9e-67 260.0 211 65.4
CDE04G2206 Ceratophyllum demersum HOM05D004065 ORTHO05D004806 1.1e-63 248.1 371 42.3
Hma1.2p1_0067F.1_g037070 Hydrangea macrophylla HOM05D004065 ORTHO05D004806 2.2e-51 207.2 182 61.0
HPP92_003382 Vanilla planifolia HOM05D004065 ORTHO05D004806 2.2e-51 207.2 336 39.0
Mapoly0126s0012 Marchantia polymorpha HOM05D004065 ORTHO05D004806 1.4e-48 198.0 385 37.4
FAN01G0794 Fragaria x ananassa HOM05D004065 ORTHO05D004806 6.7e-48 195.7 188 57.4
Pp3c24_6470 Physcomitrium patens HOM05D004065 ORTHO05D004806 4.8e-46 189.5 372 37.4
FAN06G4849 Fragaria x ananassa HOM05D004065 ORTHO05D004806 4.1e-37 159.8 117 64.1
SMO146G0347 Selaginella moellendorffii HOM05D004065 ORTHO05D004806 1.0e-32 145.2 349 35.2
Nitab4.5_0001836g0020 Nicotiana tabacum HOM05D004065 ORTHO05D004806 3.8e-27 126.7 99 74.7
Nitab4.5_0005137g0030 Nicotiana tabacum HOM05D004065 ORTHO05D004806 1.1e-26 125.2 99 73.7
AagrBONN_evm.TU.Sc2ySwM_344.343 Anthoceros agrestis HOM05D004065 ORTHO05D004806 1.5e-23 114.8 297 32.3
Gohir.A12G155100 Gossypium hirsutum HOM05D004065 ORTHO05D004806 3.2e-21 107.1 71 73.2
SHI22581 Sapria himalayana HOM05D004065 ORTHO05D004806 4.1e-21 106.7 192 40.6
CBR_g54636 Chara braunii HOM05D004065 ORTHO05D004806 5.0e-19 99.8 418 25.6
Peaxi162Scf00658g00733 Petunia axillaris HOM05D004065 ORTHO05D004806 1.4e-16 91.7 101 60.4
SHI22580 Sapria himalayana HOM05D004065 ORTHO05D004806 1.9e-13 81.3 132 48.5
Solyc06g042980.3 Solanum lycopersicum HOM05D004065 ORTHO05D004806 5.4e-13 79.7 109 49.5
Cfa005276 Carpinus fangiana HOM05D004065 ORTHO05D020362 2.7e-12 77.4 78 67.9
SHI22582 Sapria himalayana HOM05D004065 ORTHO05D004806 1.9e-10 71.2 73 50.7
Gohir.D13G142400 Gossypium hirsutum HOM05D000260 ORTHO05D020362 8.1e-09 65.9 62 69.4
Gohir.D02G008125 Gossypium hirsutum HOM05D004065 ORTHO05D000318 3.1e-08 63.9 62 67.7
Gorai.002G055300 Gossypium raimondii HOM05D000671 ORTHO05D000797 3.1e-08 63.9 66 63.6
Gorai.005G009800 Gossypium raimondii HOM05D004065 ORTHO05D020362 3.1e-08 63.9 62 67.7
Gohir.D05G040350 Gossypium hirsutum HOM05D004065 ORTHO05D020362 1.2e-07 62.0 61 67.2
TAR636G1681 Trochodendron aralioides HOM05D000172 ORTHO05D000273 3.7e-06 57.0 51 62.7


User provided reference genes

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