Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cpa.g.sc1.376 Carica papaya HOM05D006083 ORTHO05D007634 4.3e-262 907.5 477 100.0
Haze_17036 Corylus avellana HOM05D006083 ORTHO05D007634 2.9e-61 240.4 457 38.7
Cfa001507 Carpinus fangiana HOM05D006083 ORTHO05D007634 4.0e-58 229.9 385 40.5
Manes.07G113300 Manihot esculenta HOM05D006083 ORTHO05D007634 7.2e-52 209.1 424 35.6
QL08p059019 Quercus lobata HOM05D006083 ORTHO05D007634 8.8e-50 202.2 436 37.2
Potri.010G208200 Populus trichocarpa HOM05D006083 ORTHO05D007634 8.3e-48 195.7 430 35.6
CiPaw.01G284100 Carya illinoinensis HOM05D006083 ORTHO05D007634 4.1e-47 193.4 425 36.2
GSVIVG01016589001 Vitis vinifera HOM05D006083 ORTHO05D007634 3.5e-46 190.3 451 35.9
Thecc.10G046700 Theobroma cacao HOM05D006083 ORTHO05D007634 3.8e-45 186.8 431 35.0
Dinv31433 Davidia involucrata HOM05D006083 ORTHO05D007634 1.1e-39 168.7 466 31.3
Ciclev10030497m.g Citrus clementina HOM05D006083 ORTHO05D007634 1.4e-39 168.3 431 32.7
TWI15G0674 Tripterygium wilfordii HOM05D006083 ORTHO05D007634 2.7e-38 164.1 425 31.5
Prupe.2G231200 Prunus persica HOM05D006083 ORTHO05D007634 3.5e-38 163.7 424 32.3
Gohir.D04G062600 Gossypium hirsutum HOM05D006083 ORTHO05D007634 1.0e-37 162.2 438 33.8
FAN10G0925 Fragaria x ananassa HOM05D006083 ORTHO05D007634 1.3e-37 161.8 431 32.7
COL.COLO4_14970 Corchorus olitorius HOM05D006083 ORTHO05D007634 1.7e-37 161.4 429 32.2
Glyma.18G288300 Glycine max HOM05D006083 ORTHO05D007634 3.0e-37 160.6 423 33.6
Potri.008G052500 Populus trichocarpa HOM05D006083 ORTHO05D007634 1.1e-36 158.7 424 32.1
Sabra08G0037800 Salix brachista HOM05D006083 ORTHO05D007634 3.3e-36 157.1 396 32.6
Gorai.012G069900 Gossypium raimondii HOM05D006083 ORTHO05D007634 4.3e-36 156.8 438 33.3
FAN06G5109 Fragaria x ananassa HOM05D006083 ORTHO05D007634 5.6e-36 156.4 439 33.9
FAN03G2083 Fragaria x ananassa HOM05D006083 ORTHO05D007634 7.3e-36 156.0 435 33.6
Atru.chr12.505 Acer truncatum HOM05D006083 ORTHO05D007634 9.5e-36 155.6 236 41.5
FAN06G0387 Fragaria x ananassa HOM05D006083 ORTHO05D007634 9.5e-36 155.6 435 33.8
FvH4_7g21930 Fragaria vesca HOM05D006083 ORTHO05D007634 1.6e-35 154.8 435 33.1
Gohir.A05G349900 Gossypium hirsutum HOM05D006083 ORTHO05D007634 1.6e-35 154.8 436 33.3
RcHm_v2.0_Chr1g0366201 Rosa chinensis HOM05D006083 ORTHO05D007634 2.1e-35 154.5 383 35.8
FAN01G1089 Fragaria x ananassa HOM05D006083 ORTHO05D007634 1.4e-34 151.8 434 33.2
CSS0008531 Camellia sinensis var. sinensis HOM05D006083 ORTHO05D007634 1.7e-32 144.8 462 29.2
TAR623G0128 Trochodendron aralioides HOM05D006083 ORTHO05D007634 1.4e-31 141.7 417 33.1
Lalb_Chr04g0257831 Lupinus albus HOM05D006083 ORTHO05D007634 7.8e-30 136.0 432 30.3
Psat3g185080 Pisum sativum HOM05D006083 ORTHO05D007634 3.9e-29 133.7 431 31.8
MD07G1193600 Malus domestica HOM05D006083 ORTHO05D007634 5.0e-29 133.3 418 28.9
Lj1g0008101 Lotus japonicus HOM05D006083 ORTHO05D007634 6.6e-29 132.9 450 28.9
Actinidia02966 Actinidia chinensis HOM05D006083 ORTHO05D007634 4.3e-28 130.2 459 28.8
CANSAT56G1432 Cannabis sativa HOM05D006083 ORTHO05D007634 7.3e-28 129.4 431 32.0
Rhsim03G0132700 Rhododendron simsii HOM05D006083 ORTHO05D007634 2.1e-27 127.9 363 32.0
arahy.Tifrunner.gnm1.ann1.ES2X5Y Arachis hypogaea HOM05D006083 ORTHO05D007634 4.7e-27 126.7 400 30.2
arahy.Tifrunner.gnm1.ann1.V7LDKI Arachis hypogaea HOM05D006083 ORTHO05D007634 4.7e-27 126.7 400 30.2
Lj8C87G2 Lonicera japonica HOM05D006356 ORTHO05D007903 4.7e-27 126.7 348 32.2
ClCG09G020050 Citrullus lanatus HOM05D006083 ORTHO05D007634 1.8e-26 124.8 434 31.6
vmacro07157 Vaccinium macrocarpon HOM05D006083 ORTHO05D007634 1.5e-25 121.7 360 31.4
Lalb_Chr10g0091761 Lupinus albus HOM05D006083 ORTHO05D007634 7.5e-25 119.4 437 28.6
Phvul.008G013666 Phaseolus vulgaris HOM05D006083 ORTHO05D007634 9.2e-23 112.5 420 29.3
TAR369G0795 Trochodendron aralioides HOM05D006083 ORTHO05D007634 9.2e-23 112.5 349 31.5
Sed0020975 Sechium edule HOM05D006083 ORTHO05D007634 1.2e-22 112.1 431 28.8
CsaV3_5G026410 Cucumis sativus L. HOM05D006083 ORTHO05D007634 6.0e-22 109.8 431 29.2
MELO3C025449.2 Cucumis melo HOM05D006083 ORTHO05D007634 1.3e-21 108.6 433 29.3
EL10Ac2g03425 Beta vulgaris HOM05D006083 ORTHO05D007634 8.6e-21 105.9 410 30.7
TPR.G40211 Trifolium pratense HOM05D006083 ORTHO05D007634 8.6e-21 105.9 362 32.6
VMungo1383G1537 Vigna mungo HOM05D006083 ORTHO05D007634 5.6e-20 103.2 432 29.9
AUR62038373 Chenopodium quinoa HOM05D006083 ORTHO05D007634 9.5e-20 102.4 302 31.8
AUR62040954 Chenopodium quinoa HOM05D006083 ORTHO05D007634 2.1e-19 101.3 444 28.4
THA.LOC104810174 Tarenaya hassleriana HOM05D006083 ORTHO05D007634 2.8e-19 100.9 327 30.3
RcHm_v2.0_Chr3g0492191 Rosa chinensis HOM05D006083 ORTHO05D007634 1.8e-18 98.2 253 36.0
Hund12547 Selenicereus undatus HOM05D006083 ORTHO05D007634 1.3e-16 92.0 413 26.4
PGR142G3850 Punica granatum HOM05D006083 ORTHO05D007634 1.7e-16 91.7 429 28.2
Eucgr.G02918 Eucalyptus grandis HOM05D006083 ORTHO05D007634 2.9e-16 90.9 415 26.3
Medtr7g024000 Medicago truncatula HOM05D006083 ORTHO05D007634 2.9e-16 90.9 399 29.6
Ca_07227_v3 Cicer arietinum L. HOM05D006083 ORTHO05D007634 1.1e-15 89.0 295 30.5
Carub.0004s2165 Capsella rubella HOM05D006083 ORTHO05D007634 7.1e-15 86.3 324 28.7
Aqoxy4G02985 Aquilegia oxysepala HOM05D006083 ORTHO05D007634 1.2e-14 85.5 334 27.2
AL4G36990 Arabidopsis lyrata HOM05D006083 ORTHO05D007634 2.1e-14 84.7 322 28.6
Sc06g0002670 Simmondsia chinensis HOM05D006083 ORTHO05D007634 1.0e-13 82.4 363 26.7
Nn2g12936 Nelumbo nucifera HOM05D006083 ORTHO05D007634 3.9e-13 80.5 379 26.9
Thhalv10016135m.g Eutrema salsugineum HOM05D006083 ORTHO05D007634 8.7e-13 79.3 329 28.6
SHI22592 Sapria himalayana HOM05D006083 ORTHO05D007634 8.7e-13 79.3 280 28.9
AT2G39580 Arabidopsis thaliana HOM05D006083 ORTHO05D007634 1.9e-12 78.2 326 28.2
DCAR_027665 Daucus carota HOM05D006083 ORTHO05D007634 2.8e-11 74.3 313 27.8
C04p67440 Brassica napus HOM05D006083 ORTHO05D007634 3.6e-11 73.9 329 30.1
PSO339G3664 Papaver somniferum HOM05D006083 ORTHO05D007634 3.6e-11 73.9 261 26.1
Aa31LG5G20040 Aethionema arabicum HOM05D006083 ORTHO05D007634 6.2e-11 73.2 366 28.4
MBI14_g18543_MAGBIO Magnolia biondii HOM05D006083 ORTHO05D007634 1.1e-10 72.4 320 25.9
Sp4g21870 Schrenkiella parvula HOM05D006083 ORTHO05D007634 1.1e-10 72.4 395 27.1
PSO384G3245 Papaver somniferum HOM05D006083 ORTHO05D007634 4.0e-10 70.5 301 26.6
HanXRQChr09g0247731 Helianthus annuus HOM05D006083 ORTHO05D007634 6.9e-10 69.7 310 27.4
Hund24433 Selenicereus undatus HOM05D006083 ORTHO05D007634 1.5e-09 68.6 372 24.7
BolC4t28242H Brassica oleracea HOM05D006083 ORTHO05D007634 2.0e-09 68.2 329 28.6
Lsat_1_v5_gn_9_65161 Lactuca sativa HOM05D006083 ORTHO05D007634 6.4e-08 63.2 318 28.3
Oeu023787.1 Olea europaea HOM05D006083 ORTHO05D007634 6.4e-08 63.2 349 25.5
CARHR134450 Cardamine hirsuta HOM05D006083 ORTHO05D007634 9.3e-07 59.3 323 26.3


User provided reference genes

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