Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cpa.g.sc1.334 Carica papaya HOM05D008870 ORTHO05D010906 3.8e-85 318.2 164 100.0
Atru.chr12.562 Acer truncatum HOM05D000870 ORTHO05D000715 6.4e-16 88.2 58 74.1
Glyma.02G095400 Glycine max HOM05D000870 ORTHO05D000715 8.4e-16 87.8 60 70.0
Glyma.18G286100 Glycine max HOM05D000870 ORTHO05D000715 1.1e-15 87.4 60 70.0
Duzib128G0225 Durio zibethinus HOM05D000870 ORTHO05D000715 1.9e-15 86.7 58 70.7
Duzib106G1966 Durio zibethinus HOM05D000870 ORTHO05D000715 2.4e-15 86.3 58 70.7
Gohir.A10G211500 Gossypium hirsutum HOM05D000870 ORTHO05D000715 2.4e-15 86.3 59 71.2
Gorai.011G246400 Gossypium raimondii HOM05D000870 ORTHO05D000715 7.1e-15 84.7 59 71.2
Potri.010G211300 Populus trichocarpa HOM05D000870 ORTHO05D000715 7.1e-15 84.7 72 62.5
Gohir.D05G299500 Gossypium hirsutum HOM05D000870 ORTHO05D000715 9.2e-15 84.3 58 72.4
Gorai.009G317000 Gossypium raimondii HOM05D000870 ORTHO05D000715 9.2e-15 84.3 58 72.4
Potri.008G049600 Populus trichocarpa HOM05D000870 ORTHO05D000715 9.2e-15 84.3 58 70.7
Ciclev10031759m.g Citrus clementina HOM05D000870 ORTHO05D000715 1.2e-14 84.0 58 70.7
Manes.10G037600 Manihot esculenta HOM05D000870 ORTHO05D000715 1.2e-14 84.0 64 67.2
Thecc.10G057800 Theobroma cacao HOM05D000870 ORTHO05D000715 1.6e-14 83.6 54 72.2
Gohir.A05G299700 Gossypium hirsutum HOM05D000870 ORTHO05D000715 2.1e-14 83.2 58 70.7
TWI63G1221 Tripterygium wilfordii HOM05D000870 ORTHO05D000715 2.1e-14 83.2 72 61.1
vmacro07142 Vaccinium macrocarpon HOM05D000870 ORTHO05D000715 2.1e-14 83.2 75 57.3
Cfa001540 Carpinus fangiana HOM05D000870 ORTHO05D000715 2.7e-14 82.8 58 67.2
Prupe.2G227500 Prunus persica HOM05D000870 ORTHO05D000715 2.7e-14 82.8 58 70.7
COL.COLO4_10920 Corchorus olitorius HOM05D000870 ORTHO05D000715 3.5e-14 82.4 58 72.4
Oeu025628.1 Olea europaea HOM05D000870 ORTHO05D000715 3.0e-13 79.3 56 64.3
RhsimUnG0096800 Rhododendron simsii HOM05D000870 ORTHO05D000715 3.9e-13 79.0 75 54.7
Ca_07178_v3 Cicer arietinum L. HOM05D000870 ORTHO05D000715 5.1e-13 78.6 60 65.0
TWI15G0914 Tripterygium wilfordii HOM05D000870 ORTHO05D000715 6.6e-13 78.2 72 59.7
Cc02_g08480 Coffea canephora HOM05D000870 ORTHO05D000715 1.1e-12 77.4 61 65.6
Duzib114G0076 Durio zibethinus HOM05D000870 ORTHO05D000715 1.1e-12 77.4 75 54.7
Actinidia34344 Actinidia chinensis HOM05D000870 ORTHO05D000715 1.5e-12 77.0 75 60.0
CiPaw.02G180100 Carya illinoinensis HOM05D000870 ORTHO05D000715 1.5e-12 77.0 58 69.0
Dinv25961 Davidia involucrata HOM05D000870 ORTHO05D000715 1.5e-12 77.0 61 65.6
Dinv31409 Davidia involucrata HOM05D000870 ORTHO05D000715 3.3e-12 75.9 61 65.6
MD07G1190000 Malus domestica HOM05D000870 ORTHO05D000715 3.3e-12 75.9 58 65.5
Medtr7g022890 Medicago truncatula HOM05D000870 ORTHO05D000715 3.3e-12 75.9 60 60.0
ClCG02G013450 Citrullus lanatus HOM05D000870 ORTHO05D000715 7.3e-12 74.7 59 67.8
Phvul.008G015500 Phaseolus vulgaris HOM05D000870 ORTHO05D000715 7.3e-12 74.7 59 61.0
PGR142G3727 Punica granatum HOM05D000870 ORTHO05D000715 7.3e-12 74.7 59 61.0
Cpa.g.sc519.7 Carica papaya HOM05D008870 ORTHO05D010906 9.6e-12 74.3 50 70.0
CiPaw.01G281900 Carya illinoinensis HOM05D000870 ORTHO05D000715 9.6e-12 74.3 58 67.2
MD01G1120600 Malus domestica HOM05D000870 ORTHO05D000715 1.6e-11 73.6 58 63.8
CsaV3_5G006700 Cucumis sativus L. HOM05D000870 ORTHO05D000715 2.1e-11 73.2 59 66.1
Nitab4.5_0006851g0030 Nicotiana tabacum HOM05D000870 ORTHO05D000715 2.1e-11 73.2 48 75.0
Nitab4.5_0000914g0320 Nicotiana tabacum HOM05D000870 ORTHO05D000715 2.8e-11 72.8 48 75.0
Psat3g185840 Pisum sativum HOM05D000870 ORTHO05D000715 2.8e-11 72.8 60 60.0
VMungo1383G0651 Vigna mungo HOM05D000870 ORTHO05D000715 3.6e-11 72.4 60 58.3
DCAR_015229 Daucus carota HOM05D000870 ORTHO05D000715 4.7e-11 72.0 61 59.0
GSVIVG01016640001 Vitis vinifera HOM05D000870 ORTHO05D000715 4.7e-11 72.0 58 63.8
Lj1g0016343 Lotus japonicus HOM05D000870 ORTHO05D000715 6.2e-11 71.6 60 58.3
Hund20002 Selenicereus undatus HOM05D000870 ORTHO05D000715 8.1e-11 71.2 73 53.4
ECA232G3794 Erigeron canadensis HOM05D000870 ORTHO05D000715 1.1e-10 70.9 70 57.1
THA.LOC104824256 Tarenaya hassleriana HOM05D000870 ORTHO05D000715 1.4e-10 70.5 64 51.6
HanXRQChr09g0247671 Helianthus annuus HOM05D000870 ORTHO05D000715 1.8e-10 70.1 35 85.7
arahy.Tifrunner.gnm1.ann1.C1W7MD Arachis hypogaea HOM05D000870 ORTHO05D000715 3.1e-10 69.3 61 55.7
arahy.Tifrunner.gnm1.ann1.F3QZDX Arachis hypogaea HOM05D000870 ORTHO05D000715 3.1e-10 69.3 61 55.7
arahy.Tifrunner.gnm1.ann1.HJ8JHV Arachis hypogaea HOM05D000870 ORTHO05D000715 3.1e-10 69.3 61 55.7
arahy.Tifrunner.gnm1.ann1.J9LUB0 Arachis hypogaea HOM05D000870 ORTHO05D000715 3.1e-10 69.3 61 55.7
AUR62022527 Chenopodium quinoa HOM05D000870 ORTHO05D000715 3.1e-10 69.3 32 90.6
AUR62035956 Chenopodium quinoa HOM05D000870 ORTHO05D000715 3.1e-10 69.3 32 90.6
FvH4_7g21220 Fragaria vesca HOM05D000870 ORTHO05D000715 3.1e-10 69.3 53 56.6
FAN06G4451 Fragaria x ananassa HOM05D000870 ORTHO05D000715 3.1e-10 69.3 53 56.6
FAN10G3981 Fragaria x ananassa HOM05D000870 ORTHO05D000715 3.1e-10 69.3 53 56.6
Actinidia02982 Actinidia chinensis HOM05D000870 ORTHO05D000715 4.0e-10 68.9 64 59.4
AL463U10030 Arabidopsis lyrata HOM05D000870 ORTHO05D000715 4.0e-10 68.9 58 58.6
AL4G36840 Arabidopsis lyrata HOM05D000870 ORTHO05D000715 4.0e-10 68.9 58 58.6
Carub.0004s2152 Capsella rubella HOM05D000870 ORTHO05D000715 4.0e-10 68.9 58 58.6
Peaxi162Scf00015g02216 Petunia axillaris HOM05D000870 ORTHO05D000715 4.0e-10 68.9 49 71.4
QL08p057959 Quercus lobata HOM05D000870 ORTHO05D000715 4.0e-10 68.9 58 63.8
Ah.16g107570 Amaranthus hybridus HOM05D000870 ORTHO05D000715 5.2e-10 68.6 42 73.8
AT2G39450 Arabidopsis thaliana HOM05D000870 ORTHO05D000715 6.9e-10 68.2 58 58.6
Hma1.2p1_0207F.1_g087730 Hydrangea macrophylla HOM05D000870 ORTHO05D000715 1.2e-09 67.4 53 60.4
Lalb_Chr04g0257941 Lupinus albus HOM05D000870 ORTHO05D000715 1.2e-09 67.4 59 57.6
PGSC0003DMG400023516 Solanum tuberosum HOM05D000870 ORTHO05D000715 1.2e-09 67.4 63 61.9
Cpa.g.sc18.30 Carica papaya HOM05D008870 ORTHO05D010906 1.5e-09 67.0 47 68.1
FAN03G1595 Fragaria x ananassa HOM05D000870 ORTHO05D000715 1.5e-09 67.0 53 54.7
Lsat_1_v5_gn_9_66501 Lactuca sativa HOM05D000870 ORTHO05D000715 1.5e-09 67.0 35 80.0
RcHm_v2.0_Chr1g0365671 Rosa chinensis HOM05D000870 ORTHO05D000715 2.0e-09 66.6 54 57.4
Cpa.g.sc12.244 Carica papaya HOM05D008870 ORTHO05D010906 2.6e-09 66.2 50 64.0
Cpa.g.sc50.21 Carica papaya HOM05D008870 ORTHO05D010906 2.6e-09 66.2 47 70.2
Cpa.g.sc88.59 Carica papaya HOM05D008870 ORTHO05D010906 2.6e-09 66.2 50 62.0
Sopen05g033200 Solanum pennellii HOM05D000870 ORTHO05D000715 2.6e-09 66.2 62 61.3
Aqoxy4G03049 Aquilegia oxysepala HOM05D000870 ORTHO05D000715 3.4e-09 65.9 57 57.9
Cpa.g.sc44.47 Carica papaya HOM05D008870 ORTHO05D000002 5.8e-09 65.1 48 68.8
Nn2g12876 Nelumbo nucifera HOM05D000870 ORTHO05D000715 5.8e-09 65.1 50 62.0
TAR636G0054 Trochodendron aralioides HOM05D000870 ORTHO05D000715 5.8e-09 65.1 46 69.6
MBI05_g07851_MAGBIO Magnolia biondii HOM05D000870 ORTHO05D000715 7.6e-09 64.7 60 60.0
SpUn0353_0010 Schrenkiella parvula HOM05D000870 ORTHO05D010906 7.6e-09 64.7 55 58.2
Sed0027298 Sechium edule HOM05D000870 ORTHO05D000715 7.6e-09 64.7 58 62.1
Solyc05g054730.3 Solanum lycopersicum HOM05D000870 ORTHO05D000715 7.6e-09 64.7 62 61.3
Cpa.g.sc2.80 Carica papaya HOM05D008870 ORTHO05D010906 1.3e-08 63.9 61 57.4
BraA04t18463Z Brassica rapa HOM05D000870 ORTHO05D000715 1.7e-08 63.5 58 53.4
EL10Ac2g03459 Beta vulgaris HOM05D000870 ORTHO05D000715 2.2e-08 63.2 47 63.8
CANSAT54G0016 Cannabis sativa HOM05D000870 ORTHO05D000715 2.2e-08 63.2 54 59.3
Sc09g0007170 Simmondsia chinensis HOM05D000870 ORTHO05D000715 2.9e-08 62.8 55 54.5
Cpa.g.sc24.62 Carica papaya HOM05D008870 ORTHO05D010906 3.8e-08 62.4 53 58.5
Sed0008473 Sechium edule HOM05D000870 ORTHO05D000715 3.8e-08 62.4 53 60.4
Cpa.g.sc90.45 Carica papaya HOM05D008870 ORTHO05D010906 4.9e-08 62.0 47 57.4
Nn2g10502 Nelumbo nucifera HOM05D000870 ORTHO05D000715 4.9e-08 62.0 42 69.0
BcaB06g29087 Brassica carinata HOM05D000870 ORTHO05D000715 6.4e-08 61.6 58 53.4
BcaC02g07403 Brassica carinata HOM05D000870 ORTHO05D000715 6.4e-08 61.6 60 55.0
Aa31LG5G20150 Aethionema arabicum HOM05D000870 ORTHO05D000715 8.4e-08 61.2 64 50.0
Cpa.g.sc81.116 Carica papaya HOM05D006754 ORTHO05D008403 8.4e-08 61.2 42 69.0
Cpa.g.sc150.39 Carica papaya HOM05D008870 ORTHO05D010906 1.1e-07 60.8 47 68.1
Cpa.g.sc4.37 Carica papaya HOM05D008870 ORTHO05D010906 1.1e-07 60.8 45 68.9
Hma1.2p1_1483F.1_g286260 Hydrangea macrophylla HOM05D000870 ORTHO05D000715 1.4e-07 60.5 61 59.0
C04p67350 Brassica napus HOM05D000870 ORTHO05D000715 1.9e-07 60.1 60 53.3
BolC4t28230H Brassica oleracea HOM05D000870 ORTHO05D000715 1.9e-07 60.1 60 53.3
Cpa.g.sc2.43 Carica papaya HOM05D008870 ORTHO05D010906 1.9e-07 60.1 47 55.3
Thhalv10016762m.g Eutrema salsugineum HOM05D000870 ORTHO05D000715 1.9e-07 60.1 58 53.4
Hma1.2p1_0402F.1_g145051 Hydrangea macrophylla HOM05D000870 ORTHO05D000715 2.4e-07 59.7 61 57.4
BcaB02g09118 Brassica carinata HOM05D000870 ORTHO05D000715 3.2e-07 59.3 64 51.6
A05p06940 Brassica napus HOM05D000870 ORTHO05D000715 3.2e-07 59.3 54 55.6
CARHR134320 Cardamine hirsuta HOM05D000870 ORTHO05D000715 7.1e-07 58.2 58 51.7
Cpa.g.sc56.68 Carica papaya HOM05D008870 ORTHO05D010906 7.1e-07 58.2 48 62.5
Cpa.g.sc79.23 Carica papaya HOM05D008870 ORTHO05D010906 7.1e-07 58.2 48 56.2
BcaC02g12074 Brassica carinata HOM05D000870 ORTHO05D010906 9.3e-07 57.8 52 53.8
CSS0026766 Camellia sinensis var. sinensis HOM05D000870 ORTHO05D000715 9.3e-07 57.8 63 55.6
CDE09G0752 Ceratophyllum demersum HOM05D000870 ORTHO05D000715 9.3e-07 57.8 46 60.9
Lj8C90G13 Lonicera japonica HOM05D000870 ORTHO05D000715 9.3e-07 57.8 61 50.8
BcaC02g12075 Brassica carinata HOM05D000870 ORTHO05D000715 1.2e-06 57.4 53 54.7
A04p30450 Brassica napus HOM05D000870 ORTHO05D000715 1.2e-06 57.4 60 51.7
C04p08200 Brassica napus HOM05D000870 ORTHO05D000715 1.2e-06 57.4 53 54.7
BolC4t22430H Brassica oleracea HOM05D000870 ORTHO05D000715 1.2e-06 57.4 53 54.7
Cpa.g.sc56.18 Carica papaya HOM05D008870 ORTHO05D010906 1.2e-06 57.4 47 61.7
Cpa.g.sc85.88 Carica papaya HOM05D008870 ORTHO05D010906 1.2e-06 57.4 47 59.6
Lsat_1_v5_gn_8_17280 Lactuca sativa HOM05D000870 ORTHO05D000715 1.2e-06 57.4 68 52.9
TAR633G0149 Trochodendron aralioides HOM05D000870 ORTHO05D000715 3.5e-06 55.8 60 56.7
CAN.G1339.7 Capsicum annuum HOM05D000870 ORTHO05D000715 6.0e-06 55.1 58 58.6
Cpa.g.sc112.77 Carica papaya HOM05D008870 ORTHO05D010906 7.8e-06 54.7 48 58.3


User provided reference genes

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