Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cpa.g.sc1.280 Carica papaya HOM05D004486 ORTHO05D006329 2.2e-165 585.5 288 100.0
QL08p057259 Quercus lobata HOM05D004486 ORTHO05D006329 8.6e-149 530.4 285 89.1
Cfa001575 Carpinus fangiana HOM05D004486 ORTHO05D006329 1.2e-147 526.6 286 88.5
Manes.18G141033 Manihot esculenta HOM05D004486 ORTHO05D006329 3.0e-146 521.9 286 87.8
CANSAT11G2341 Cannabis sativa HOM05D004486 ORTHO05D006329 1.2e-145 520.0 286 85.7
CiPaw.01G277900 Carya illinoinensis HOM05D004486 ORTHO05D006329 1.2e-145 520.0 286 87.1
Potri.008G045900 Populus trichocarpa HOM05D004486 ORTHO05D006329 2.0e-145 519.2 286 86.4
Manes.18G141037 Manihot esculenta HOM05D004486 ORTHO05D006329 3.4e-145 518.5 286 87.1
Thecc.10G065100 Theobroma cacao HOM05D004486 ORTHO05D006329 1.3e-144 516.5 286 87.1
Hma1.2p1_2685F.1_g326910 Hydrangea macrophylla HOM05D004486 ORTHO05D006329 2.2e-144 515.8 285 86.7
Dinv11819 Davidia involucrata HOM05D004486 ORTHO05D006329 2.9e-144 515.4 286 87.8
CSS0008191 Camellia sinensis var. sinensis HOM05D004486 ORTHO05D006329 3.7e-144 515.0 286 86.7
Sabra08G0032200 Salix brachista HOM05D004486 ORTHO05D006329 3.7e-144 515.0 286 85.7
PGR044G2316 Punica granatum HOM05D004486 ORTHO05D006329 6.4e-144 514.2 286 86.0
Gohir.D13G021700 Gossypium hirsutum HOM05D004486 ORTHO05D006329 8.3e-144 513.8 286 86.7
Gorai.013G024500 Gossypium raimondii HOM05D004486 ORTHO05D006329 8.3e-144 513.8 286 86.7
CSS0049406 Camellia sinensis var. sinensis HOM05D004486 ORTHO05D006329 1.1e-143 513.5 286 86.4
Gohir.A13G021200 Gossypium hirsutum HOM05D004486 ORTHO05D006329 2.4e-143 512.3 286 86.7
Atru.chr12.611 Acer truncatum HOM05D004486 ORTHO05D006329 3.2e-143 511.9 286 86.4
Hund19290 Selenicereus undatus HOM05D004486 ORTHO05D006329 9.2e-143 510.4 286 85.7
Cc09_g02360 Coffea canephora HOM05D004486 ORTHO05D006329 2.7e-142 508.8 286 85.3
TAR369G0956 Trochodendron aralioides HOM05D004486 ORTHO05D006329 3.5e-142 508.4 286 85.3
Ciclev10030974m.g Citrus clementina HOM05D004486 ORTHO05D006329 4.6e-142 508.1 284 85.9
Peaxi162Scf01024g00121 Petunia axillaris HOM05D004486 ORTHO05D006329 4.6e-142 508.1 284 84.9
Nitab4.5_0000830g0030 Nicotiana tabacum HOM05D004486 ORTHO05D006329 1.3e-141 506.5 284 84.5
Nitab4.5_0000561g0010 Nicotiana tabacum HOM05D004486 ORTHO05D006329 1.7e-141 506.1 284 84.2
Duzib106G0308 Durio zibethinus HOM05D004486 ORTHO05D006329 2.3e-141 505.8 285 85.6
GSVIVG01032649001 Vitis vinifera HOM05D004486 ORTHO05D006329 6.6e-141 504.2 286 84.6
CAN.G742.18 Capsicum annuum HOM05D004486 ORTHO05D006329 1.1e-140 503.4 284 84.2
Actinidia03014 Actinidia chinensis HOM05D004486 ORTHO05D006329 1.5e-140 503.1 286 85.0
EL10Ac2g03540 Beta vulgaris HOM05D004486 ORTHO05D006329 1.5e-140 503.1 286 85.7
Eucgr.J01127 Eucalyptus grandis HOM05D004486 ORTHO05D006329 1.5e-140 503.1 286 84.3
Lj8A94T45 Lonicera japonica HOM05D004486 ORTHO05D006329 7.3e-140 500.7 286 83.9
Migut.F01788 Erythranthe guttata HOM05D004486 ORTHO05D006329 1.6e-139 499.6 286 84.3
TWI38G2347 Tripterygium wilfordii HOM05D004486 ORTHO05D006329 4.7e-139 498.0 286 82.9
Potri.010G215700 Populus trichocarpa HOM05D004486 ORTHO05D006329 8.0e-139 497.3 286 83.2
Sabra10G0166800 Salix brachista HOM05D004486 ORTHO05D006329 1.0e-138 496.9 286 82.2
Ah.10g033110 Amaranthus hybridus HOM05D004486 ORTHO05D006329 2.3e-138 495.7 286 83.2
SGA_v2.0_scaffold71G24033 Striga asiatica HOM05D004486 ORTHO05D006329 2.3e-138 495.7 286 83.2
AUR62027896 Chenopodium quinoa HOM05D004486 ORTHO05D006329 6.8e-138 494.2 286 84.3
AUR62036016 Chenopodium quinoa HOM05D004486 ORTHO05D006329 6.8e-138 494.2 286 84.3
PSO339G6713 Papaver somniferum HOM05D004486 ORTHO05D006329 1.2e-137 493.4 286 80.4
FAN06G4941 Fragaria x ananassa HOM05D004486 ORTHO05D006329 1.5e-137 493.0 286 81.8
ECA233G4916 Erigeron canadensis HOM05D004486 ORTHO05D006329 7.5e-137 490.7 287 84.3
FvH4_7g20511 Fragaria vesca HOM05D004486 ORTHO05D006329 9.8e-137 490.3 286 81.5
RcHm_v2.0_Chr1g0364401 Rosa chinensis HOM05D004486 ORTHO05D006329 9.8e-137 490.3 286 82.2
FAN01G2088 Fragaria x ananassa HOM05D004486 ORTHO05D006329 2.9e-136 488.8 286 81.1
MBI05_g24466_MAGBIO Magnolia biondii HOM05D004486 ORTHO05D006329 2.9e-136 488.8 286 82.2
Lsat_1_v5_gn_8_21161 Lactuca sativa HOM05D004486 ORTHO05D006329 3.7e-136 488.4 287 84.0
Lj7A436T61 Lonicera japonica HOM05D004486 ORTHO05D006329 3.7e-136 488.4 286 82.2
Prupe.2G220700 Prunus persica HOM05D004486 ORTHO05D006329 3.7e-136 488.4 287 80.8
PSO384G2310 Papaver somniferum HOM05D004486 ORTHO05D006329 1.1e-135 486.9 286 79.7
Rhsim12G0129400 Rhododendron simsii HOM05D004486 ORTHO05D006329 1.2e-134 483.4 317 76.0
HanXRQChr12g0367761 Helianthus annuus HOM05D004486 ORTHO05D006329 1.6e-134 483.0 286 83.6
FAN10G3892 Fragaria x ananassa HOM05D004486 ORTHO05D006329 2.7e-134 482.3 299 78.3
Glyma.20G244100 Glycine max HOM05D004486 ORTHO05D006329 3.5e-134 481.9 286 80.4
Eucgr.J01128 Eucalyptus grandis HOM05D004486 ORTHO05D006329 4.6e-134 481.5 284 80.6
MSTRG.361 Avicennia marina HOM05D004486 ORTHO05D006329 7.8e-134 480.7 284 82.7
MD07G1182000 Malus domestica HOM05D004486 ORTHO05D006329 1.0e-133 480.3 284 79.2
SalBow3G3918 Salvia bowleyana HOM05D004486 ORTHO05D006329 1.0e-133 480.3 286 80.1
THA.LOC104827314 Tarenaya hassleriana HOM05D004486 ORTHO05D006329 1.7e-133 479.6 287 81.5
Lalb_Chr21g0307511 Lupinus albus HOM05D004486 ORTHO05D006329 3.0e-133 478.8 286 80.1
Sed0016157 Sechium edule HOM05D004486 ORTHO05D006329 2.5e-132 475.7 286 79.4
Ca_11379_v3 Cicer arietinum L. HOM05D004486 ORTHO05D006329 1.2e-131 473.4 286 79.0
Lj5g0008233 Lotus japonicus HOM05D004486 ORTHO05D006329 2.1e-131 472.6 286 79.0
Medtr1g116230 Medicago truncatula HOM05D004486 ORTHO05D006329 4.7e-131 471.5 286 79.4
MD01G1114100 Malus domestica HOM05D004486 ORTHO05D006329 6.2e-131 471.1 284 78.2
Phvul.007G005900 Phaseolus vulgaris HOM05D004486 ORTHO05D006329 8.1e-131 470.7 286 78.7
PGSC0003DMG400028998 Solanum tuberosum HOM05D004486 ORTHO05D006329 8.1e-131 470.7 286 79.4
FAN06G4255 Fragaria x ananassa HOM05D004486 ORTHO05D006329 1.8e-130 469.5 274 81.8
TWI38G1612 Tripterygium wilfordii HOM05D004486 ORTHO05D006329 1.8e-130 469.5 286 78.0
DCAR_006479 Daucus carota HOM05D004486 ORTHO05D006329 2.3e-130 469.2 305 76.4
Thhalv10012982m.g Eutrema salsugineum HOM05D004486 ORTHO05D006329 5.2e-130 468.0 288 79.9
Haze_16953 Corylus avellana HOM05D004486 ORTHO05D006329 6.8e-130 467.6 286 80.8
BcaNung01890 Brassica carinata HOM05D004486 ORTHO05D006329 2.0e-129 466.1 288 79.2
Psat6g239960 Pisum sativum HOM05D004486 ORTHO05D006329 2.0e-129 466.1 284 78.2
Sp6g30500 Schrenkiella parvula HOM05D004486 ORTHO05D006329 2.6e-129 465.7 288 79.5
Aa31sc127G20 Aethionema arabicum HOM05D004486 ORTHO05D006329 3.4e-129 465.3 286 79.0
TPR.G10423 Trifolium pratense HOM05D004486 ORTHO05D006329 4.4e-129 464.9 286 77.6
Sopen04g019990 Solanum pennellii HOM05D004486 ORTHO05D006329 5.8e-129 464.5 286 78.7
BcaNung01146 Brassica carinata HOM05D004486 ORTHO05D006329 7.5e-129 464.2 286 79.0
arahy.Tifrunner.gnm1.ann1.GKFC1I Arachis hypogaea HOM05D004486 ORTHO05D006329 1.3e-128 463.4 286 78.0
A10p24750 Brassica napus HOM05D004486 ORTHO05D006329 1.3e-128 463.4 286 79.0
Aqoxy4G03158 Aquilegia oxysepala HOM05D004486 ORTHO05D006329 1.7e-128 463.0 284 78.5
BraA02t05173Z Brassica rapa HOM05D004486 ORTHO05D006329 1.7e-128 463.0 286 78.7
Carub.0006s1168 Capsella rubella HOM05D004486 ORTHO05D006329 1.7e-128 463.0 286 79.4
MD01G1113900 Malus domestica HOM05D004486 ORTHO05D006329 4.9e-128 461.5 284 76.4
arahy.Tifrunner.gnm1.ann1.Q6727A Arachis hypogaea HOM05D004486 ORTHO05D006329 6.4e-128 461.1 286 77.6
A02p02010 Brassica napus HOM05D004486 ORTHO05D006329 6.4e-128 461.1 286 78.3
C09p63580 Brassica napus HOM05D004486 ORTHO05D006329 6.4e-128 461.1 286 78.7
AL6G24140 Arabidopsis lyrata HOM05D004486 ORTHO05D006329 1.4e-127 459.9 288 78.5
Nitab4.5_0000830g0050 Nicotiana tabacum HOM05D004486 ORTHO05D006329 1.9e-127 459.5 288 78.1
CDE04G1784 Ceratophyllum demersum HOM05D004486 ORTHO05D006329 2.4e-127 459.1 283 78.4
BcaC04g19110 Brassica carinata HOM05D004486 ORTHO05D006329 4.1e-127 458.4 286 78.3
BolC9t59201H Brassica oleracea HOM05D004486 ORTHO05D006329 4.1e-127 458.4 286 78.3
BraA10t44538Z Brassica rapa HOM05D004486 ORTHO05D006329 4.1e-127 458.4 286 78.0
AT5G13520 Arabidopsis thaliana HOM05D004486 ORTHO05D006329 7.1e-127 457.6 286 78.0
CsaV3_5G026050 Cucumis sativus L. HOM05D004486 ORTHO05D006329 9.2e-127 457.2 286 75.2
HPP92_015409 Vanilla planifolia HOM05D004486 ORTHO05D006329 1.2e-126 456.8 286 76.6
HPP92_026987 Vanilla planifolia HOM05D004486 ORTHO05D006329 1.2e-126 456.8 286 76.6
vmacro07094 Vaccinium macrocarpon HOM05D004486 ORTHO05D006329 1.9e-124 449.5 389 60.9
CSS0021534 Camellia sinensis var. sinensis HOM05D004486 ORTHO05D006329 2.5e-124 449.1 286 76.9
VMungo0720G3071 Vigna mungo HOM05D004486 ORTHO05D006329 3.3e-124 448.7 286 76.6
MELO3C025494.2 Cucumis melo HOM05D004486 ORTHO05D006329 7.3e-124 447.6 286 73.8
CARHR199920 Cardamine hirsuta HOM05D004486 ORTHO05D006329 9.5e-124 447.2 288 77.1
unitig_60.g25720 Utricularia gibba HOM05D004486 ORTHO05D006329 5.8e-121 438.0 284 73.9
Os03g0819100 Oryza sativa ssp. japonica HOM05D004486 ORTHO05D006329 4.9e-120 434.9 284 75.0
Zm00001eb062480 Zea mays HOM05D004486 ORTHO05D006329 4.9e-120 434.9 284 75.0
Peaxi162Scf01024g00123 Petunia axillaris HOM05D004486 ORTHO05D006329 1.1e-119 433.7 260 79.2
Nn2g12957 Nelumbo nucifera HOM05D004486 ORTHO05D006329 3.2e-119 432.2 240 85.4
VMungo0720G1168 Vigna mungo HOM05D004486 ORTHO05D006329 1.3e-117 426.8 282 72.7
C02p06220 Brassica napus HOM05D004486 ORTHO05D006329 1.5e-108 396.7 287 70.7
Nitab4.5_0005262g0010 Nicotiana tabacum HOM05D004486 ORTHO05D006329 1.5e-108 396.7 286 69.2
SEGI_01278 Sequoiadendron giganteum HOM05D004486 ORTHO05D006329 4.8e-107 391.7 283 65.7
BolC2t06563H Brassica oleracea HOM05D004486 ORTHO05D006329 1.3e-99 367.1 216 80.1
SEGI_27690 Sequoiadendron giganteum HOM05D004486 ORTHO05D006329 5.3e-98 361.7 283 59.7
AL6G23300 Arabidopsis lyrata HOM05D004486 ORTHO05D006329 6.9e-98 361.3 224 76.3
AL6G23330 Arabidopsis lyrata HOM05D004486 ORTHO05D006329 6.9e-98 361.3 224 76.3
Solyc04g049720.4 Solanum lycopersicum HOM05D004486 ORTHO05D006329 1.1e-95 354.0 206 82.5
Manes.18G142200 Manihot esculenta HOM05D004486 ORTHO05D006329 1.4e-95 353.6 203 83.7
Oeu016149.1 Olea europaea HOM05D004486 ORTHO05D006329 4.6e-94 348.6 189 85.2
ClCG09G020360 Citrullus lanatus HOM05D004486 ORTHO05D006329 1.8e-93 346.7 286 61.9
ECA233G5280 Erigeron canadensis HOM05D004486 ORTHO05D006329 1.0e-88 330.9 183 85.8
MSTRG.8160 Avicennia marina HOM05D004486 ORTHO05D006329 3.5e-86 322.4 188 81.4
Zm00001eb258690 Zea mays HOM05D004486 ORTHO05D006329 4.8e-83 312.0 193 77.7
Mapoly0007s0135 Marchantia polymorpha HOM05D004486 ORTHO05D006329 6.5e-80 301.6 284 51.4
AagrBONN_evm.TU.Sc2ySwM_362.2493 Anthoceros agrestis HOM05D004486 ORTHO05D006329 8.5e-80 301.2 283 52.7
Duzib128G1554 Durio zibethinus HOM05D004486 ORTHO05D006329 1.5e-73 280.4 286 55.6
CBR_g45218 Chara braunii HOM05D004486 ORTHO05D006329 6.5e-72 275.0 284 46.8
SMO356G0749 Selaginella moellendorffii HOM05D004486 ORTHO05D006329 9.4e-71 271.2 294 47.3
Zm00001eb246100 Zea mays HOM05D004486 ORTHO05D006329 1.7e-64 250.4 148 80.4
Zm00001eb160290 Zea mays HOM05D004486 ORTHO05D006329 2.2e-64 250.0 147 81.0
Zm00001eb103910 Zea mays HOM05D004486 ORTHO05D006329 2.5e-55 219.9 131 80.2
MELO3C025493.2 Cucumis melo HOM05D004486 ORTHO05D031648 8.5e-48 194.9 129 73.6
unitig_0.g185 Utricularia gibba HOM05D004486 ORTHO05D006329 1.5e-36 157.5 172 49.4
ECA233G4824 Erigeron canadensis HOM05D004486 ORTHO05D031648 3.4e-36 156.4 101 78.2
Cfa024826 Carpinus fangiana HOM05D004486 ORTHO05D006329 9.8e-36 154.8 304 32.2
MSTRG.8161 Avicennia marina HOM05D004486 ORTHO05D031648 2.2e-35 153.7 99 75.8
Actinidia38236 Actinidia chinensis HOM05D004486 ORTHO05D006329 1.7e-32 144.1 76 89.5
Cre13.g585900 Chlamydomonas reinhardtii HOM05D004486 ORTHO05D006329 2.9e-27 126.7 303 32.0
Haze_22492 Corylus avellana HOM05D000583 ORTHO05D000442 5.9e-25 119.0 288 31.6
MCO01G623 Micromonas commoda HOM05D004486 ORTHO05D006329 1.1e-23 114.8 316 26.9
Nn8g39313 Nelumbo nucifera HOM05D004486 ORTHO05D006329 2.8e-22 110.2 185 37.3
PRCOL_00006050 Prasinoderma coloniale HOM05D004486 ORTHO05D006329 5.2e-21 105.9 300 27.3
Nitab4.5_0001155g0060 Nicotiana tabacum HOM05D011506 ORTHO05D014242 2.6e-12 77.0 46 78.3


User provided reference genes

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