Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cpa.g.sc1.279 Carica papaya HOM05D004659 ORTHO05D005547 4.5e-124 448.0 234 100.0
Gorai.009G315800 Gossypium raimondii HOM05D004659 ORTHO05D005547 1.8e-88 329.7 226 76.5
Gohir.D05G298600 Gossypium hirsutum HOM05D004659 ORTHO05D005547 6.9e-88 327.8 226 76.1
Gohir.A05G298900 Gossypium hirsutum HOM05D004659 ORTHO05D005547 1.5e-87 326.6 226 75.7
Thecc.10G065300 Theobroma cacao HOM05D004659 ORTHO05D005547 7.6e-87 324.3 228 78.1
THA.LOC104827313 Tarenaya hassleriana HOM05D004659 ORTHO05D005547 1.2e-84 317.0 230 72.6
Atru.chr12.612 Acer truncatum HOM05D004659 ORTHO05D005547 4.6e-84 315.1 235 73.2
Manes.07G069200 Manihot esculenta HOM05D004659 ORTHO05D005547 1.3e-83 313.5 232 75.4
Potri.008G045800 Populus trichocarpa HOM05D004659 ORTHO05D005547 3.9e-83 312.0 231 71.0
Sabra08G0032100 Salix brachista HOM05D004659 ORTHO05D005547 5.1e-83 311.6 232 71.6
Duzib106G0066 Durio zibethinus HOM05D004659 ORTHO05D005547 2.5e-82 309.3 231 76.2
CiPaw.02G177400 Carya illinoinensis HOM05D004659 ORTHO05D005547 4.3e-82 308.5 226 71.7
COL.COLO4_23776 Corchorus olitorius HOM05D004659 ORTHO05D005547 9.6e-82 307.4 231 73.6
Prupe.8G222500 Prunus persica HOM05D004659 ORTHO05D005547 9.6e-82 307.4 240 70.8
Sabra10G0166900 Salix brachista HOM05D004659 ORTHO05D005547 9.6e-82 307.4 231 70.1
THA.LOC104799364 Tarenaya hassleriana HOM05D004659 ORTHO05D005547 9.6e-82 307.4 230 69.6
MELO3C011720.2 Cucumis melo HOM05D004659 ORTHO05D005547 1.6e-81 306.6 233 72.5
ClCG02G013790 Citrullus lanatus HOM05D004659 ORTHO05D005547 2.1e-81 306.2 232 71.6
Potri.010G215900 Populus trichocarpa HOM05D004659 ORTHO05D005547 2.8e-81 305.8 231 70.6
CsaV3_5G006380 Cucumis sativus L. HOM05D004659 ORTHO05D005547 1.8e-80 303.1 233 70.4
Lj1P926T21 Lonicera japonica HOM05D004659 ORTHO05D005547 3.4e-79 298.9 232 69.0
PGR031G1734 Punica granatum HOM05D004659 ORTHO05D005547 3.4e-79 298.9 237 67.1
Aa31sc127G30 Aethionema arabicum HOM05D004659 ORTHO05D005547 7.6e-79 297.7 225 68.0
MD10G1183400 Malus domestica HOM05D004659 ORTHO05D005547 1.3e-78 297.0 239 70.3
TWI38G0010 Tripterygium wilfordii HOM05D004659 ORTHO05D005547 1.3e-78 297.0 237 70.9
Rhsim03G0135900 Rhododendron simsii HOM05D004659 ORTHO05D005547 4.9e-78 295.0 241 66.4
BcaC04g19111 Brassica carinata HOM05D004659 ORTHO05D005547 6.4e-78 294.7 224 68.8
BolC9t59202H Brassica oleracea HOM05D004659 ORTHO05D005547 6.4e-78 294.7 224 68.8
Cfa013817 Carpinus fangiana HOM05D004659 ORTHO05D005547 6.4e-78 294.7 231 70.6
Oeu017240.1 Olea europaea HOM05D004659 ORTHO05D005547 6.4e-78 294.7 233 65.2
Nitab4.5_0004104g0080 Nicotiana tabacum HOM05D004659 ORTHO05D005547 8.4e-78 294.3 238 67.2
MD05G1196100 Malus domestica HOM05D004659 ORTHO05D005547 1.1e-77 293.9 241 69.3
Haze_22491 Corylus avellana HOM05D004659 ORTHO05D005547 2.4e-77 292.7 231 70.6
Thhalv10014625m.g Eutrema salsugineum HOM05D004659 ORTHO05D005547 2.4e-77 292.7 224 70.5
TAR369G1054 Trochodendron aralioides HOM05D004659 ORTHO05D005547 3.2e-77 292.4 229 72.5
arahy.Tifrunner.gnm1.ann1.23T474 Arachis hypogaea HOM05D004659 ORTHO05D005547 4.2e-77 292.0 233 67.4
AL6G24130 Arabidopsis lyrata HOM05D004659 ORTHO05D005547 9.3e-77 290.8 224 65.6
BraA02t05172Z Brassica rapa HOM05D004659 ORTHO05D005547 9.3e-77 290.8 224 68.3
Nitab4.5_0000691g0220 Nicotiana tabacum HOM05D004659 ORTHO05D005547 9.3e-77 290.8 236 66.9
BcaNung01889 Brassica carinata HOM05D004659 ORTHO05D005547 1.6e-76 290.0 224 68.3
CSS0038055 Camellia sinensis var. sinensis HOM05D004659 ORTHO05D005547 1.6e-76 290.0 236 66.9
CARHR199930 Cardamine hirsuta HOM05D004659 ORTHO05D005547 1.6e-76 290.0 224 67.0
Sed0009994 Sechium edule HOM05D004659 ORTHO05D005547 1.6e-76 290.0 234 70.5
AT5G13510 Arabidopsis thaliana HOM05D004659 ORTHO05D005547 2.1e-76 289.7 224 65.6
SalBow4G3080 Salvia bowleyana HOM05D004659 ORTHO05D005547 2.1e-76 289.7 231 64.5
BolC2t06562H Brassica oleracea HOM05D004659 ORTHO05D005547 3.5e-76 288.9 224 69.2
Hma1.2p1_2685F.1_g326920 Hydrangea macrophylla HOM05D004659 ORTHO05D005547 4.6e-76 288.5 233 66.5
A10p24760 Brassica napus HOM05D004659 ORTHO05D005547 6.0e-76 288.1 224 68.3
C02p06210 Brassica napus HOM05D004659 ORTHO05D005547 6.0e-76 288.1 224 67.9
BraA10t44539Z Brassica rapa HOM05D004659 ORTHO05D005547 6.0e-76 288.1 224 68.3
CAN.G186.30 Capsicum annuum HOM05D004659 ORTHO05D005547 6.0e-76 288.1 236 65.3
Sp6g30510 Schrenkiella parvula HOM05D004659 ORTHO05D005547 7.9e-76 287.7 224 68.8
vmacro04881 Vaccinium macrocarpon HOM05D004659 ORTHO05D005547 7.9e-76 287.7 228 68.4
C09p63590 Brassica napus HOM05D004659 ORTHO05D005547 1.0e-75 287.3 224 68.3
Solyc04g009540.1 Solanum lycopersicum HOM05D004659 ORTHO05D005547 1.3e-75 287.0 229 65.5
Sopen04g004700 Solanum pennellii HOM05D004659 ORTHO05D005547 1.3e-75 287.0 229 65.5
Carub.0006s1167 Capsella rubella HOM05D004659 ORTHO05D005547 1.8e-75 286.6 224 67.9
Nn2g10610 Nelumbo nucifera HOM05D004659 ORTHO05D005547 2.3e-75 286.2 225 69.3
Nn8g38769 Nelumbo nucifera HOM05D004659 ORTHO05D005547 2.3e-75 286.2 225 69.3
BcaNung01147 Brassica carinata HOM05D004659 ORTHO05D005547 3.9e-75 285.4 224 67.9
PGSC0003DMG400032570 Solanum tuberosum HOM05D004659 ORTHO05D005547 3.9e-75 285.4 229 65.1
Ciclev10032705m.g Citrus clementina HOM05D004659 ORTHO05D005547 5.1e-75 285.0 215 73.0
MSTRG.9197 Avicennia marina HOM05D004659 ORTHO05D005547 6.7e-75 284.6 232 66.4
Peaxi162Scf00195g00083 Petunia axillaris HOM05D004659 ORTHO05D005547 1.5e-74 283.5 237 65.0
Sc09g0006840 Simmondsia chinensis HOM05D004659 ORTHO05D005547 1.5e-74 283.5 234 65.4
Medtr4g131540 Medicago truncatula HOM05D004659 ORTHO05D005547 7.4e-74 281.2 230 64.3
QL08p057255 Quercus lobata HOM05D004659 ORTHO05D005547 1.3e-73 280.4 233 68.7
Ca_21106_v3 Cicer arietinum L. HOM05D004659 ORTHO05D005547 1.6e-73 280.0 230 62.6
RcHm_v2.0_Chr6g0287931 Rosa chinensis HOM05D004659 ORTHO05D005547 1.6e-73 280.0 234 67.1
CANSAT35G1484 Cannabis sativa HOM05D004659 ORTHO05D005547 2.1e-73 279.6 227 68.7
Aqoxy4G03156 Aquilegia oxysepala HOM05D004659 ORTHO05D005547 6.2e-73 278.1 226 66.8
Psat4g007600 Pisum sativum HOM05D004659 ORTHO05D005547 8.1e-73 277.7 226 64.6
PSO384G3929 Papaver somniferum HOM05D004659 ORTHO05D005547 1.4e-72 276.9 213 71.4
SGA_v2.0_scaffold62G21448 Striga asiatica HOM05D004659 ORTHO05D005547 1.8e-72 276.6 240 61.7
Ah.10g033100 Amaranthus hybridus HOM05D004659 ORTHO05D005547 5.3e-72 275.0 225 68.4
AUR62027894 Chenopodium quinoa HOM05D004659 ORTHO05D005547 5.3e-72 275.0 229 63.8
MBI05_g34749_MAGBIO Magnolia biondii HOM05D004659 ORTHO05D005547 6.9e-72 274.6 196 73.0
Glyma.17G075900 Glycine max HOM05D004659 ORTHO05D005547 9.0e-72 274.2 227 66.1
CDE02G4355 Ceratophyllum demersum HOM05D002697 ORTHO05D005547 2.6e-71 272.7 205 71.2
PSO339G6228 Papaver somniferum HOM05D004659 ORTHO05D005547 2.6e-71 272.7 213 70.4
Lsat_1_v5_gn_9_66541 Lactuca sativa HOM05D004659 ORTHO05D005547 3.4e-71 272.3 237 65.0
VMungo0464G0639 Vigna mungo HOM05D004659 ORTHO05D005547 3.4e-71 272.3 227 62.1
unitig_46.g18586 Utricularia gibba HOM05D004659 ORTHO05D005547 4.5e-71 271.9 233 63.5
Phvul.004G002100 Phaseolus vulgaris HOM05D004659 ORTHO05D005547 9.9e-71 270.8 227 60.4
AUR62036014 Chenopodium quinoa HOM05D004659 ORTHO05D005547 1.3e-70 270.4 229 62.4
Cc09_g02380 Coffea canephora HOM05D004659 ORTHO05D005547 2.2e-70 269.6 236 65.3
Lalb_Chr07g0179691 Lupinus albus HOM05D004659 ORTHO05D005547 2.2e-70 269.6 208 69.2
CDE09G1094 Ceratophyllum demersum HOM05D004659 ORTHO05D005547 2.9e-70 269.2 224 66.5
ECA232G1287 Erigeron canadensis HOM05D004659 ORTHO05D005547 2.1e-68 263.1 209 67.0
HanXRQChr09g0247171 Helianthus annuus HOM05D004659 ORTHO05D005547 2.1e-68 263.1 229 65.5
FAN24G1009 Fragaria x ananassa HOM05D004659 ORTHO05D005547 4.6e-68 261.9 210 68.1
FvH4_2g21340 Fragaria vesca HOM05D004659 ORTHO05D005547 7.9e-68 261.2 230 66.1
Actinidia03015 Actinidia chinensis HOM05D004659 ORTHO05D005547 1.3e-67 260.4 194 66.0
Lj4g0017760 Lotus japonicus HOM05D004659 ORTHO05D005547 2.8e-65 252.7 230 61.3
Zm00001eb013020 Zea mays HOM05D004659 ORTHO05D005547 2.8e-65 252.7 190 69.5
ATR0594G228 Amborella trichopoda HOM05D004659 ORTHO05D005547 4.8e-65 251.9 186 69.4
DCAR_019149 Daucus carota HOM05D004659 ORTHO05D005547 1.1e-64 250.8 231 61.5
Zm00001eb397230 Zea mays HOM05D004659 ORTHO05D005547 1.4e-64 250.4 209 64.6
Os03g0284400 Oryza sativa ssp. japonica HOM05D004659 ORTHO05D005547 2.0e-63 246.5 228 60.1
SMO239G0117 Selaginella moellendorffii HOM05D004659 ORTHO05D005547 2.0e-63 246.5 176 72.2
Lalb_Chr13g0301081 Lupinus albus HOM05D004659 ORTHO05D005547 2.2e-62 243.0 230 62.6
Mapoly0115s0051 Marchantia polymorpha HOM05D004659 ORTHO05D005547 3.8e-62 242.3 184 66.8
Pp3c2_35950 Physcomitrium patens HOM05D004659 ORTHO05D005547 2.5e-61 239.6 180 67.8
AagrBONN_evm.TU.Sc2ySwM_228.2422 Anthoceros agrestis HOM05D004659 ORTHO05D005547 4.6e-60 235.3 179 67.6
Pp3c1_1330 Physcomitrium patens HOM05D004659 ORTHO05D005547 6.0e-60 235.0 180 67.8
Dinv31375 Davidia involucrata HOM05D004659 ORTHO05D005547 3.7e-57 225.7 177 72.3
SMO001G0016 Selaginella moellendorffii HOM05D004659 ORTHO05D005547 2.1e-52 209.9 139 69.8
TPR.G37110 Trifolium pratense HOM05D004659 ORTHO05D005547 1.9e-50 203.4 133 70.7
CBR_g32465 Chara braunii HOM05D004659 ORTHO05D005547 3.8e-46 189.1 186 55.4
AT3G12370 Arabidopsis thaliana HOM05D004659 ORTHO05D005547 1.4e-43 180.6 140 62.1
Haze_16952 Corylus avellana HOM05D004659 ORTHO05D005547 1.8e-43 180.3 231 48.5
AL3G24020 Arabidopsis lyrata HOM05D004659 ORTHO05D005547 8.8e-43 177.9 140 60.7
Thhalv10022434m.g Eutrema salsugineum HOM05D004659 ORTHO05D005547 8.8e-43 177.9 140 60.7
Aa31sc153G80 Aethionema arabicum HOM05D004659 ORTHO05D005547 1.1e-42 177.6 140 60.0
Sp3g10560 Schrenkiella parvula HOM05D004659 ORTHO05D005547 2.0e-42 176.8 140 60.0
C01p52890 Brassica napus HOM05D004659 ORTHO05D005547 3.3e-42 176.0 140 60.0
Zm00001eb355270 Zea mays HOM05D004659 ORTHO05D005547 3.3e-42 176.0 141 57.4
Carub.0003s1173 Capsella rubella HOM05D004659 ORTHO05D005547 4.4e-42 175.6 140 60.0
BcaC05g29267 Brassica carinata HOM05D004659 ORTHO05D005547 7.4e-42 174.9 140 59.3
C05p55460 Brassica napus HOM05D004659 ORTHO05D005547 7.4e-42 174.9 140 59.3
BolC5t34212H Brassica oleracea HOM05D004659 ORTHO05D005547 7.4e-42 174.9 140 59.3
BolC1t05226H Brassica oleracea HOM05D004659 ORTHO05D005547 9.7e-42 174.5 140 59.3
A05p37030 Brassica napus HOM05D004659 ORTHO05D005547 2.2e-41 173.3 140 58.6
BraA05t22500Z Brassica rapa HOM05D004659 ORTHO05D005547 2.2e-41 173.3 140 58.6
BcaC09g48234 Brassica carinata HOM05D004659 ORTHO05D005547 3.7e-41 172.6 140 59.3
CARHR086910 Cardamine hirsuta HOM05D004659 ORTHO05D005547 6.3e-41 171.8 140 58.6
Os05g0121500 Oryza sativa ssp. japonica HOM05D004659 ORTHO05D005547 4.5e-39 165.6 157 50.3
SMO306G0014 Selaginella moellendorffii HOM05D004659 ORTHO05D005547 1.1e-37 161.0 102 74.5
A02p02000 Brassica napus HOM05D004659 ORTHO05D005547 1.6e-36 157.1 104 77.9
HPP92_012064 Vanilla planifolia HOM05D004659 ORTHO05D005547 1.3e-33 147.5 158 47.5
Cfa001576 Carpinus fangiana HOM05D004659 ORTHO05D005547 2.4e-32 143.3 236 45.8
Glyma.13G155300 Glycine max HOM05D004659 ORTHO05D005547 7.0e-32 141.7 108 69.4
BcaB01g05353 Brassica carinata HOM05D004659 ORTHO05D005547 1.0e-30 137.9 132 59.1
PRCOL_00005567 Prasinoderma coloniale HOM05D004659 ORTHO05D005547 5.0e-30 135.6 165 43.0
Rhsim07G0202500 Rhododendron simsii HOM05D004659 ORTHO05D005547 2.1e-28 130.2 139 59.0
Sc01g0005590 Simmondsia chinensis HOM05D004659 ORTHO05D005547 2.6e-26 123.2 151 43.7
Hund23274 Selenicereus undatus HOM05D004659 ORTHO05D005547 3.3e-26 122.9 190 38.9
MD17G1117700 Malus domestica HOM05D004659 ORTHO05D005547 6.3e-25 118.6 90 64.4
Sc26g0002120 Simmondsia chinensis HOM05D004659 ORTHO05D005547 5.3e-24 115.5 151 41.1
GSVIVG01032650001 Vitis vinifera HOM05D004659 ORTHO05D005547 7.0e-24 115.2 228 43.9
Actinidia38237 Actinidia chinensis HOM05D004659 ORTHO05D005547 3.2e-21 106.3 103 63.1
Cre06.g272850 Chlamydomonas reinhardtii HOM05D004659 ORTHO05D005547 1.8e-19 100.5 192 30.7
Sc01g0009170 Simmondsia chinensis HOM05D004659 ORTHO05D005547 1.8e-19 100.5 188 37.2
Ah.09g233850 Amaranthus hybridus HOM05D004659 ORTHO05D005547 3.0e-19 99.8 198 33.3
EL10Ac6g15306 Beta vulgaris HOM05D004659 ORTHO05D005547 1.2e-18 97.8 198 32.8
Zm00001eb342870 Zea mays HOM05D004659 ORTHO05D005547 7.5e-18 95.1 71 60.6
Pp3c11_2850 Physcomitrium patens HOM05D004659 ORTHO05D005547 3.7e-17 92.8 67 65.7
MBI05_g35481_MAGBIO Magnolia biondii HOM05D004659 ORTHO05D005547 2.4e-16 90.1 102 47.1
AUR62043493 Chenopodium quinoa HOM05D004659 ORTHO05D005547 2.1e-12 77.0 109 38.5
Medtr3g058560 Medicago truncatula HOM05D004659 ORTHO05D005547 5.9e-07 58.9 77 44.2


User provided reference genes

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