Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cpa.g.sc1.278 Carica papaya HOM05D004534 ORTHO05D005413 4.2e-107 391.3 193 100.0
Duzib106G1068 Durio zibethinus HOM05D004534 ORTHO05D005413 9.4e-67 257.3 231 59.7
Prupe.2G220600 Prunus persica HOM05D004534 ORTHO05D005413 5.7e-64 248.1 265 52.1
Manes.10G040600 Manihot esculenta HOM05D004534 ORTHO05D005413 1.7e-63 246.5 232 57.3
GSVIVG01016358001 Vitis vinifera HOM05D004534 ORTHO05D005413 2.8e-63 245.7 262 51.1
Atru.chr12.616 Acer truncatum HOM05D004534 ORTHO05D005413 4.8e-63 245.0 263 54.0
RcHm_v2.0_Chr1g0364391 Rosa chinensis HOM05D004534 ORTHO05D005413 6.3e-63 244.6 266 50.4
Thecc.10G065400 Theobroma cacao HOM05D004534 ORTHO05D005413 6.3e-63 244.6 259 51.7
Gorai.009G315700 Gossypium raimondii HOM05D004534 ORTHO05D005413 1.4e-62 243.4 261 52.5
Ciclev10031838m.g Citrus clementina HOM05D004534 ORTHO05D005413 2.4e-62 242.7 263 52.9
FAN06G4936 Fragaria x ananassa HOM05D004534 ORTHO05D005413 3.1e-62 242.3 262 50.0
Gohir.D05G298500 Gossypium hirsutum HOM05D004534 ORTHO05D005413 4.1e-62 241.9 261 52.5
Cfa001577 Carpinus fangiana HOM05D004534 ORTHO05D005413 5.3e-62 241.5 263 52.1
Gohir.A05G298800 Gossypium hirsutum HOM05D004534 ORTHO05D005413 5.3e-62 241.5 261 52.1
TWI38G2053 Tripterygium wilfordii HOM05D004534 ORTHO05D005413 7.0e-62 241.1 264 51.5
CiPaw.01G277800 Carya illinoinensis HOM05D004534 ORTHO05D005413 1.5e-61 240.0 263 51.7
FAN01G1783 Fragaria x ananassa HOM05D004534 ORTHO05D005413 1.5e-61 240.0 271 48.0
COL.COLO4_23775 Corchorus olitorius HOM05D004534 ORTHO05D005413 3.5e-61 238.8 263 51.0
Dinv31374 Davidia involucrata HOM05D004534 ORTHO05D005413 7.7e-61 237.7 262 50.8
Potri.010G216000 Populus trichocarpa HOM05D004534 ORTHO05D005413 2.9e-60 235.7 265 50.9
CSS0028612 Camellia sinensis var. sinensis HOM05D004534 ORTHO05D005413 6.5e-60 234.6 288 47.2
Haze_16951 Corylus avellana HOM05D004534 ORTHO05D005413 8.5e-60 234.2 263 51.3
Actinidia03016 Actinidia chinensis HOM05D004534 ORTHO05D005413 5.5e-59 231.5 263 49.8
Nitab4.5_0000830g0040 Nicotiana tabacum HOM05D004534 ORTHO05D005413 5.5e-59 231.5 233 54.9
Potri.008G045700 Populus trichocarpa HOM05D004534 ORTHO05D005413 3.6e-58 228.8 263 49.0
PGR044G2491 Punica granatum HOM05D004534 ORTHO05D005413 4.7e-58 228.4 260 49.2
HanXRQChr08g0219701 Helianthus annuus HOM05D004534 ORTHO05D005413 1.0e-57 227.3 258 48.8
ECA233G2770 Erigeron canadensis HOM05D004534 ORTHO05D000452 2.3e-57 226.1 263 47.9
Lsat_1_v5_gn_8_20980 Lactuca sativa HOM05D004534 ORTHO05D005413 2.0e-56 223.0 264 47.7
TWI31G1398 Tripterygium wilfordii HOM05D004534 ORTHO05D005413 6.3e-55 218.0 263 47.1
Cpa.g.sc139.34 Carica papaya HOM05D004534 ORTHO05D005413 8.2e-55 217.6 263 45.6
MD11G1120100 Malus domestica HOM05D004534 ORTHO05D005413 1.4e-54 216.9 267 47.6
Phvul.L001232 Phaseolus vulgaris HOM05D004534 ORTHO05D005413 1.8e-54 216.5 266 47.4
Solyc06g075540.3 Solanum lycopersicum HOM05D004534 ORTHO05D005413 2.4e-54 216.1 261 47.1
Atru.chr3.3749 Acer truncatum HOM05D004534 ORTHO05D005413 4.1e-54 215.3 261 46.0
QL01p035546 Quercus lobata HOM05D004534 ORTHO05D005413 4.1e-54 215.3 270 45.9
Manes.11G138500 Manihot esculenta HOM05D004534 ORTHO05D005413 5.3e-54 214.9 267 45.7
CAN.G394.3 Capsicum annuum HOM05D004534 ORTHO05D005413 7.0e-54 214.5 263 46.0
GSVIVG01025090001 Vitis vinifera HOM05D004534 ORTHO05D005413 7.0e-54 214.5 264 46.2
Thhalv10002577m.g Eutrema salsugineum HOM05D004534 ORTHO05D005413 9.1e-54 214.2 258 46.5
RcHm_v2.0_Chr5g0061761 Rosa chinensis HOM05D004534 ORTHO05D005413 1.2e-53 213.8 262 46.2
THA.LOC104814850 Tarenaya hassleriana HOM05D004534 ORTHO05D005413 1.2e-53 213.8 262 46.6
Glyma.13G330000 Glycine max HOM05D004534 ORTHO05D005413 1.6e-53 213.4 266 46.2
MD07G1181700 Malus domestica HOM05D004534 ORTHO05D005413 1.6e-53 213.4 247 49.0
PGSC0003DMG402006611 Solanum tuberosum HOM05D004534 ORTHO05D005413 2.0e-53 213.0 263 46.8
AUR62036013 Chenopodium quinoa HOM05D004534 ORTHO05D005413 2.6e-53 212.6 234 50.0
Ciclev10030338m.g Citrus clementina HOM05D004534 ORTHO05D005413 2.6e-53 212.6 260 47.3
Hma1.2p1_2042F.1_g312230 Hydrangea macrophylla HOM05D004534 ORTHO05D005413 2.6e-53 212.6 266 46.2
Aa31LG4G14970 Aethionema arabicum HOM05D004534 ORTHO05D005413 3.5e-53 212.2 258 46.1
Dinv32819 Davidia involucrata HOM05D004534 ORTHO05D005413 4.5e-53 211.8 267 45.3
Migut.F02016 Erythranthe guttata HOM05D004534 ORTHO05D005413 4.5e-53 211.8 267 44.6
MELO3C025495.2 Cucumis melo HOM05D004534 ORTHO05D005413 5.9e-53 211.5 272 45.2
Nn2g10612 Nelumbo nucifera HOM05D004534 ORTHO05D005413 5.9e-53 211.5 260 45.4
Peaxi162Scf00072g00025 Petunia axillaris HOM05D004534 ORTHO05D005413 5.9e-53 211.5 263 46.0
AT3G45740 Arabidopsis thaliana HOM05D004534 ORTHO05D005413 1.0e-52 210.7 258 46.1
Nitab4.5_0000561g0030 Nicotiana tabacum HOM05D004534 ORTHO05D005413 1.3e-52 210.3 269 46.1
CARHR149920 Cardamine hirsuta HOM05D004534 ORTHO05D005413 1.7e-52 209.9 258 46.1
Cfa011397 Carpinus fangiana HOM05D004534 ORTHO05D005413 1.7e-52 209.9 270 45.6
Sp5g15770 Schrenkiella parvula HOM05D004534 ORTHO05D005413 1.7e-52 209.9 259 45.9
VMungo1080G0465 Vigna mungo HOM05D004534 ORTHO05D005413 2.2e-52 209.5 266 45.5
Ah.10g033090 Amaranthus hybridus HOM05D004534 ORTHO05D005413 2.9e-52 209.1 247 47.0
Nitab4.5_0004774g0020 Nicotiana tabacum HOM05D004534 ORTHO05D005413 2.9e-52 209.1 259 46.3
Lj3g0025326 Lotus japonicus HOM05D004534 ORTHO05D005413 3.8e-52 208.8 261 46.7
PSO384G4947 Papaver somniferum HOM05D004534 ORTHO05D005413 3.8e-52 208.8 259 45.2
A06p21280 Brassica napus HOM05D004534 ORTHO05D005413 5.0e-52 208.4 256 46.5
BraA06t25216Z Brassica rapa HOM05D004534 ORTHO05D005413 5.0e-52 208.4 256 46.5
Lalb_Chr24g0394391 Lupinus albus HOM05D004534 ORTHO05D005413 5.0e-52 208.4 266 44.7
EL10Ac2g03539 Beta vulgaris HOM05D004534 ORTHO05D005413 6.5e-52 208.0 268 45.9
Aqoxy4G03153 Aquilegia oxysepala HOM05D004534 ORTHO05D005413 8.5e-52 207.6 256 46.9
BcaC01g01956 Brassica carinata HOM05D004534 ORTHO05D005413 8.5e-52 207.6 256 46.1
C03p70180 Brassica napus HOM05D004534 ORTHO05D005413 8.5e-52 207.6 256 46.1
CsaV3_5G026040 Cucumis sativus L. HOM05D004534 ORTHO05D005413 8.5e-52 207.6 264 45.8
Medtr2g095830 Medicago truncatula HOM05D004534 ORTHO05D005413 1.1e-51 207.2 266 44.7
BcaB01g01071 Brassica carinata HOM05D004534 ORTHO05D005413 1.5e-51 206.8 256 45.3
HPP92_003600 Vanilla planifolia HOM05D004534 ORTHO05D005413 2.5e-51 206.1 261 44.1
CSS0009646 Camellia sinensis var. sinensis HOM05D004534 ORTHO05D005413 3.2e-51 205.7 260 45.4
BolC3t19273H Brassica oleracea HOM05D004534 ORTHO05D005413 4.2e-51 205.3 256 45.7
DCAR_018857 Daucus carota HOM05D004534 ORTHO05D005413 4.2e-51 205.3 257 46.7
Nitab4.5_0000270g0130 Nicotiana tabacum HOM05D004534 ORTHO05D005413 4.2e-51 205.3 259 45.6
arahy.Tifrunner.gnm1.ann1.NM19P7 Arachis hypogaea HOM05D004534 ORTHO05D005413 5.5e-51 204.9 254 45.3
PSO339G4951 Papaver somniferum HOM05D004534 ORTHO05D005413 5.5e-51 204.9 259 45.2
FvH4_3g34110 Fragaria vesca HOM05D004534 ORTHO05D005413 7.2e-51 204.5 262 44.3
TPR.G11635 Trifolium pratense HOM05D004534 ORTHO05D005413 1.2e-50 203.8 259 44.8
CANSAT54G1456 Cannabis sativa HOM05D004534 ORTHO05D005413 1.6e-50 203.4 265 44.5
Lj1A180G32 Lonicera japonica HOM05D004534 ORTHO05D005413 2.1e-50 203.0 260 45.0
AL5G24380 Arabidopsis lyrata HOM05D004534 ORTHO05D005413 2.7e-50 202.6 258 44.6
Psat5g281360 Pisum sativum HOM05D004534 ORTHO05D005413 2.7e-50 202.6 262 44.3
FAN11G3381 Fragaria x ananassa HOM05D004534 ORTHO05D005413 6.1e-50 201.4 262 43.9
arahy.Tifrunner.gnm1.ann1.AW7LWX Arachis hypogaea HOM05D004534 ORTHO05D005413 1.0e-49 200.7 254 44.9
CDE04G1344 Ceratophyllum demersum HOM05D004534 ORTHO05D005413 1.0e-49 200.7 264 44.7
Rhsim01G0222900 Rhododendron simsii HOM05D004534 ORTHO05D005413 1.0e-49 200.7 260 43.8
Gohir.D08G009000 Gossypium hirsutum HOM05D004534 ORTHO05D005413 1.8e-49 199.9 260 45.8
Sed0013966 Sechium edule HOM05D004534 ORTHO05D005413 2.3e-49 199.5 266 43.6
Thecc.09G335300 Theobroma cacao HOM05D004534 ORTHO05D005413 4.0e-49 198.7 259 45.2
Peaxi162Scf01024g00128 Petunia axillaris HOM05D004534 ORTHO05D005413 5.2e-49 198.4 293 42.7
ATR0582G124 Amborella trichopoda HOM05D004534 ORTHO05D005413 1.2e-48 197.2 258 42.2
Migut.D02166 Erythranthe guttata HOM05D004534 ORTHO05D005413 1.2e-48 197.2 264 43.9
FAN03G3228 Fragaria x ananassa HOM05D004534 ORTHO05D005413 1.2e-48 197.2 262 44.3
Zm00001eb397220 Zea mays HOM05D004534 ORTHO05D005413 1.5e-48 196.8 264 42.0
FAN06G3998 Fragaria x ananassa HOM05D004534 ORTHO05D005413 2.0e-48 196.4 371 35.6
PGR102G1844 Punica granatum HOM05D004534 ORTHO05D005413 2.6e-48 196.1 261 43.7
ClCG09G020370 Citrullus lanatus HOM05D004534 ORTHO05D005413 3.4e-48 195.7 212 52.4
MELO3C026849.2 Cucumis melo HOM05D004534 ORTHO05D005413 4.4e-48 195.3 266 42.5
Ciclev10032311m.g Citrus clementina HOM05D004534 ORTHO05D005413 5.7e-48 194.9 287 44.3
Cc01_g11880 Coffea canephora HOM05D004534 ORTHO05D005413 5.7e-48 194.9 262 43.9
Gohir.A08G000096 Gossypium hirsutum HOM05D004534 ORTHO05D005413 5.7e-48 194.9 260 45.4
FAN21G3213 Fragaria x ananassa HOM05D004534 ORTHO05D005413 1.3e-47 193.7 273 42.1
CsaV3_1G012750 Cucumis sativus L. HOM05D004534 ORTHO05D005413 6.3e-47 191.4 266 41.7
MSTRG.18620 Avicennia marina HOM05D004534 ORTHO05D005413 3.1e-46 189.1 264 42.0
Ca_01369_v3 Cicer arietinum L. HOM05D004534 ORTHO05D005413 2.7e-45 186.0 250 43.2
FAN25G2491 Fragaria x ananassa HOM05D004534 ORTHO05D005413 2.7e-45 186.0 287 40.1
Sed0004393 Sechium edule HOM05D004534 ORTHO05D005413 2.7e-45 186.0 234 46.2
vmacro14490 Vaccinium macrocarpon HOM05D004534 ORTHO05D005413 3.5e-45 185.7 303 38.6
unitig_37.g12680 Utricularia gibba HOM05D004534 ORTHO05D005413 3.8e-44 182.2 262 40.8
Hund18962 Selenicereus undatus HOM05D004534 ORTHO05D005413 1.5e-43 180.3 259 42.1
Os03g0284500 Oryza sativa ssp. japonica HOM05D004534 ORTHO05D005413 2.5e-43 179.5 266 39.1
CSS0050279 Camellia sinensis var. sinensis HOM05D004534 ORTHO05D005413 4.2e-43 178.7 258 41.9
Sc06g0008140 Simmondsia chinensis HOM05D004534 ORTHO05D005413 7.2e-43 177.9 264 39.4
AUR62009701 Chenopodium quinoa HOM05D004534 ORTHO05D005413 2.1e-42 176.4 262 40.1
AUR62036245 Chenopodium quinoa HOM05D004534 ORTHO05D005413 2.1e-42 176.4 256 40.2
COL.COLO4_18394 Corchorus olitorius HOM05D004534 ORTHO05D005413 2.7e-42 176.0 212 47.2
QL08p057247 Quercus lobata HOM05D004534 ORTHO05D005413 1.0e-41 174.1 118 73.7
Oeu051854.2 Olea europaea HOM05D004534 ORTHO05D005413 4.0e-41 172.2 242 43.0
Sabra08G0032000 Salix brachista HOM05D004534 ORTHO05D005413 9.8e-40 167.5 253 40.7
Cc09_g02390 Coffea canephora HOM05D004534 ORTHO05D005413 1.7e-39 166.8 133 65.4
Sopen06g031920 Solanum pennellii HOM05D004534 ORTHO05D005413 2.2e-39 166.4 129 63.6
EL10Ac7g15886 Beta vulgaris HOM05D004534 ORTHO05D005413 4.9e-39 165.2 299 36.5
SGA_v2.0_scaffold61G21215 Striga asiatica HOM05D004534 ORTHO05D005413 3.1e-38 162.5 244 39.8
Lj1A926G31 Lonicera japonica HOM05D004534 ORTHO05D005413 4.1e-38 162.2 249 43.4
Sabra10G0167000 Salix brachista HOM05D004534 ORTHO05D005413 1.5e-35 153.7 291 37.1
Oeu055059.2 Olea europaea HOM05D004534 ORTHO05D005413 1.6e-34 150.2 225 41.3
FAN16G0790 Fragaria x ananassa HOM05D004534 ORTHO05D005413 2.0e-32 143.3 285 34.4
SMO118G0317 Selaginella moellendorffii HOM05D004534 ORTHO05D005413 2.2e-31 139.8 253 33.6
Gorai.004G002200 Gossypium raimondii HOM05D004534 ORTHO05D005413 1.8e-30 136.7 214 41.1
AUR62035991 Chenopodium quinoa HOM05D004534 ORTHO05D005413 4.6e-29 132.1 116 56.9
FAN10G0821 Fragaria x ananassa HOM05D004534 ORTHO05D005413 1.1e-27 127.5 259 35.5
Carub.0005s1159 Capsella rubella HOM05D004534 ORTHO05D005413 9.5e-27 124.4 212 36.8
Mapoly0029s0123 Marchantia polymorpha HOM05D004534 ORTHO05D005413 9.5e-27 124.4 261 31.4
Pp3c16_8740 Physcomitrium patens HOM05D004534 ORTHO05D005413 1.2e-26 124.0 274 29.6
Nitab4.5_0000830g0060 Nicotiana tabacum HOM05D004534 ORTHO05D005413 2.2e-23 113.2 130 49.2
MBI18_g24932_MAGBIO Magnolia biondii HOM05D004534 ORTHO05D005413 3.9e-20 102.4 74 58.1
FvH4_7g20500 Fragaria vesca HOM05D004534 ORTHO05D005413 2.1e-18 96.7 59 74.6
TAR633G1279 Trochodendron aralioides HOM05D004534 ORTHO05D005413 1.1e-17 94.4 58 72.4
CiPaw.13G104100 Carya illinoinensis HOM05D004534 ORTHO05D005413 1.7e-15 87.0 58 65.5
Prupe.6G090300 Prunus persica HOM05D004534 ORTHO05D005413 4.9e-15 85.5 55 69.1
RcHm_v2.0_Chr5g0046071 Rosa chinensis HOM05D004534 ORTHO05D005413 6.4e-15 85.1 48 79.2
VMungo0464G2039 Vigna mungo HOM05D004534 ORTHO05D005413 1.6e-13 80.5 56 60.7
Nitab4.5_0000830g0070 Nicotiana tabacum HOM05D004534 ORTHO05D005413 2.5e-11 73.2 43 74.4
Cre01.g013250 Chlamydomonas reinhardtii HOM05D004534 ORTHO05D005413 9.5e-11 71.2 104 40.4
Glyma.15G044000 Glycine max HOM05D004534 ORTHO05D005413 6.2e-10 68.6 48 64.6
AagrBONN_evm.TU.Sc2ySwM_228.5090 Anthoceros agrestis HOM05D004534 ORTHO05D005413 1.9e-06 57.0 52 44.2
Cc09_g02400 Coffea canephora HOM05D004534 ORTHO05D005413 9.2e-06 54.7 40 67.5


User provided reference genes

Program Settings