Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cpa.g.sc1.266 Carica papaya HOM05D005940 ORTHO05D007027 3.0e-162 575.1 286 100.0
Ciclev10033357m.g Citrus clementina HOM05D005940 ORTHO05D007027 2.4e-95 352.8 276 68.1
Duzib114G0016 Durio zibethinus HOM05D005940 ORTHO05D007027 4.1e-95 352.1 280 66.4
Thecc.10G067000 Theobroma cacao HOM05D005940 ORTHO05D007027 1.2e-94 350.5 278 66.5
Gohir.A05G343900 Gossypium hirsutum HOM05D005940 ORTHO05D007027 1.1e-92 344.0 279 63.4
Gorai.012G093100 Gossypium raimondii HOM05D005940 ORTHO05D007027 1.6e-91 340.1 279 63.1
Cfa001588 Carpinus fangiana HOM05D005940 ORTHO05D007027 3.6e-91 339.0 276 62.0
TWI38G0416 Tripterygium wilfordii HOM05D005940 ORTHO05D007027 8.1e-91 337.8 276 65.2
Gohir.D04G082400 Gossypium hirsutum HOM05D005940 ORTHO05D007027 3.1e-90 335.9 279 63.1
Manes.10G041400 Manihot esculenta HOM05D005940 ORTHO05D007027 3.1e-90 335.9 288 61.8
GSVIVG01016348001 Vitis vinifera HOM05D005940 ORTHO05D007027 6.8e-90 334.7 275 61.8
QL08p056963 Quercus lobata HOM05D005940 ORTHO05D007027 2.0e-89 333.2 279 63.1
Dinv31364 Davidia involucrata HOM05D005940 ORTHO05D007027 2.2e-88 329.7 277 62.1
TAR623G0325 Trochodendron aralioides HOM05D005940 ORTHO05D007027 2.4e-87 326.2 276 62.0
Atru.chr12.628 Acer truncatum HOM05D005940 ORTHO05D007027 3.2e-87 325.9 272 62.9
CiPaw.02G177100 Carya illinoinensis HOM05D005940 ORTHO05D007027 4.6e-86 322.0 277 61.0
Eucgr.G02795 Eucalyptus grandis HOM05D005940 ORTHO05D007027 1.1e-84 317.4 277 60.3
Psat6g207800 Pisum sativum HOM05D005940 ORTHO05D007027 7.3e-84 314.7 273 59.0
Rhsim09G0154600 Rhododendron simsii HOM05D005940 ORTHO05D007027 2.1e-83 313.2 279 63.4
ClCG02G013840 Citrullus lanatus HOM05D005940 ORTHO05D007027 1.4e-82 310.5 275 60.4
Sabra10G0167600 Salix brachista HOM05D005940 ORTHO05D007027 1.4e-82 310.5 273 59.7
Prupe.2G219400 Prunus persica HOM05D005940 ORTHO05D007027 4.0e-82 308.9 275 60.7
Glyma.20G145700 Glycine max HOM05D005940 ORTHO05D007027 1.2e-81 307.4 273 57.5
Lj5g0027680 Lotus japonicus HOM05D005940 ORTHO05D007027 1.2e-81 307.4 273 56.8
Hma1.2p1_0192F.1_g083550 Hydrangea macrophylla HOM05D005940 ORTHO05D007027 3.4e-81 305.8 289 60.6
Potri.010G216500 Populus trichocarpa HOM05D005940 ORTHO05D007027 1.3e-80 303.9 276 57.6
Prupe.2G216400 Prunus persica HOM05D005940 ORTHO05D007027 1.3e-80 303.9 275 60.0
Ca_10908_v3 Cicer arietinum L. HOM05D005940 ORTHO05D007027 2.2e-80 303.1 272 58.1
DCAR_019137 Daucus carota HOM05D005940 ORTHO05D007027 2.2e-80 303.1 277 61.0
FvH4_7g20280 Fragaria vesca HOM05D005940 ORTHO05D007027 3.8e-80 302.4 272 59.2
Medtr1g103870 Medicago truncatula HOM05D005940 ORTHO05D007027 8.4e-80 301.2 273 55.7
Sed0018989 Sechium edule HOM05D005940 ORTHO05D007027 1.1e-79 300.8 277 58.5
Cc09_g02600 Coffea canephora HOM05D005940 ORTHO05D007027 1.4e-79 300.4 278 57.2
VMungo0720G1649 Vigna mungo HOM05D005940 ORTHO05D007027 1.9e-79 300.1 273 57.9
FAN10G2498 Fragaria x ananassa HOM05D005940 ORTHO05D007027 4.2e-79 298.9 275 57.5
CANSAT25G0128 Cannabis sativa HOM05D005940 ORTHO05D007027 9.3e-79 297.7 288 55.6
FAN06G4195 Fragaria x ananassa HOM05D005940 ORTHO05D007027 9.3e-79 297.7 272 58.5
Medtr1g030720 Medicago truncatula HOM05D005940 ORTHO05D007027 1.2e-78 297.4 275 55.6
Medtr1g103900 Medicago truncatula HOM05D005940 ORTHO05D007027 1.6e-78 297.0 276 55.4
PSO170G0010 Papaver somniferum HOM05D005940 ORTHO05D007027 2.1e-78 296.6 282 55.0
CsaV3_5G006320 Cucumis sativus L. HOM05D005940 ORTHO05D007027 3.5e-78 295.8 274 57.7
TPR.G5540 Trifolium pratense HOM05D005940 ORTHO05D007027 1.0e-77 294.3 273 54.6
THA.LOC104809986 Tarenaya hassleriana HOM05D005940 ORTHO05D007027 2.3e-77 293.1 279 60.6
ECA232G2986 Erigeron canadensis HOM05D005940 ORTHO05D007027 3.9e-77 292.4 282 59.2
Nn2g10645 Nelumbo nucifera HOM05D005940 ORTHO05D007027 8.7e-77 291.2 274 58.4
PSO357G0422 Papaver somniferum HOM05D005940 ORTHO05D007027 1.5e-76 290.4 276 55.1
Haze_16942 Corylus avellana HOM05D005940 ORTHO05D007027 2.5e-76 289.7 232 62.9
RcHm_v2.0_Chr1g0364231 Rosa chinensis HOM05D005940 ORTHO05D007027 3.3e-76 289.3 274 56.9
Nitab4.5_0000061g0280 Nicotiana tabacum HOM05D005940 ORTHO05D007027 5.6e-76 288.5 273 56.4
Phvul.007G056900 Phaseolus vulgaris HOM05D005940 ORTHO05D007027 7.4e-76 288.1 273 55.3
FAN01G1689 Fragaria x ananassa HOM05D005940 ORTHO05D007027 1.6e-75 287.0 272 59.2
Oeu055049.1 Olea europaea HOM05D005940 ORTHO05D007027 1.6e-75 287.0 278 56.1
Peaxi162Scf00208g00211 Petunia axillaris HOM05D005940 ORTHO05D007027 1.1e-74 284.3 276 55.1
Lalb_Chr21g0304671 Lupinus albus HOM05D005940 ORTHO05D007027 1.8e-74 283.5 271 56.1
MD01G1112500 Malus domestica HOM05D005940 ORTHO05D007027 3.1e-74 282.7 273 58.2
HanXRQChr16g0510921 Helianthus annuus HOM05D005940 ORTHO05D007027 9.0e-74 281.2 276 55.4
Lsat_1_v5_gn_1_128021 Lactuca sativa HOM05D005940 ORTHO05D007027 5.8e-73 278.5 277 55.2
Solyc04g049890.4 Solanum lycopersicum HOM05D005940 ORTHO05D007027 7.6e-73 278.1 272 55.1
PGSC0003DMG400010575 Solanum tuberosum HOM05D005940 ORTHO05D007027 1.3e-72 277.3 275 54.9
Lj1A925T62 Lonicera japonica HOM05D005940 ORTHO05D007027 2.9e-72 276.2 247 60.7
Thhalv10010491m.g Eutrema salsugineum HOM05D005940 ORTHO05D007027 6.4e-72 275.0 281 57.7
PGR102G2278 Punica granatum HOM05D005940 ORTHO05D007027 6.4e-72 275.0 277 54.5
Migut.F01794 Erythranthe guttata HOM05D005940 ORTHO05D007027 1.4e-71 273.9 274 54.7
Aa31sc33G20 Aethionema arabicum HOM05D005940 ORTHO05D007027 5.5e-71 271.9 297 53.9
Aqoxy7G03246 Aquilegia oxysepala HOM05D005940 ORTHO05D007027 9.3e-71 271.2 276 54.0
arahy.Tifrunner.gnm1.ann1.3UA0UH Arachis hypogaea HOM05D005940 ORTHO05D007027 9.3e-71 271.2 281 53.0
arahy.Tifrunner.gnm1.ann1.N3JKH2 Arachis hypogaea HOM05D005940 ORTHO05D007027 1.6e-70 270.4 276 52.9
Sp5g07450 Schrenkiella parvula HOM05D005940 ORTHO05D007027 3.5e-70 269.2 280 56.1
Sopen04g020430 Solanum pennellii HOM05D005940 ORTHO05D007027 4.6e-70 268.9 279 53.0
EL10Ac2g03550 Beta vulgaris HOM05D005940 ORTHO05D007027 1.8e-69 266.9 281 52.7
AT3G54970 Arabidopsis thaliana HOM05D005940 ORTHO05D007027 5.1e-69 265.4 275 58.5
MELO3C011725.2 Cucumis melo HOM05D005940 ORTHO05D007027 6.7e-69 265.0 274 54.0
AL5G36080 Arabidopsis lyrata HOM05D005940 ORTHO05D007027 3.3e-68 262.7 287 56.1
CARHR164970 Cardamine hirsuta HOM05D005940 ORTHO05D007027 4.3e-68 262.3 278 57.6
A09p47960 Brassica napus HOM05D005940 ORTHO05D007027 9.6e-68 261.2 277 56.0
BcaB01g00141 Brassica carinata HOM05D005940 ORTHO05D007027 2.8e-67 259.6 282 55.0
Carub.0005s2159 Capsella rubella HOM05D005940 ORTHO05D007027 1.8e-66 256.9 281 56.9
BraA09t40251Z Brassica rapa HOM05D005940 ORTHO05D007027 4.0e-66 255.8 277 55.6
BolC8t50626H Brassica oleracea HOM05D005940 ORTHO05D007027 1.5e-65 253.8 277 54.9
BcaNung04648 Brassica carinata HOM05D005940 ORTHO05D007027 1.0e-64 251.1 277 54.2
C08p30200 Brassica napus HOM05D005940 ORTHO05D007027 1.0e-64 251.1 277 54.2
COL.COLO4_23758 Corchorus olitorius HOM05D005940 ORTHO05D007027 3.2e-63 246.1 181 68.0
AUR62020800 Chenopodium quinoa HOM05D005940 ORTHO05D007027 2.3e-61 240.0 248 53.6
FAN03G1319 Fragaria x ananassa HOM05D005940 ORTHO05D007027 2.8e-59 233.0 227 56.4
ATR0594G026 Amborella trichopoda HOM05D005940 ORTHO05D007027 6.3e-59 231.9 253 53.4
SGA_v2.0_scaffold122G33246 Striga asiatica HOM05D005940 ORTHO05D007027 1.4e-58 230.7 229 55.5
CDE11G0619 Ceratophyllum demersum HOM05D005940 ORTHO05D007027 4.1e-58 229.2 277 48.0
AUR62027909 Chenopodium quinoa HOM05D005940 ORTHO05D007027 2.0e-57 226.9 279 49.1
HPP92_019787 Vanilla planifolia HOM05D005940 ORTHO05D007027 2.2e-56 223.4 273 50.2
CSS0031020 Camellia sinensis var. sinensis HOM05D005940 ORTHO05D007027 8.5e-56 221.5 195 63.1
CAN.G693.9 Capsicum annuum HOM05D005940 ORTHO05D007027 4.6e-54 215.7 226 52.7
Zm00001eb194920 Zea mays HOM05D005940 ORTHO05D007027 6.7e-53 211.8 272 48.2
Nitab4.5_0003582g0030 Nicotiana tabacum HOM05D005940 ORTHO05D007027 4.1e-50 202.6 184 57.6
SalBow3G3596 Salvia bowleyana HOM05D005940 ORTHO05D007027 4.5e-49 199.1 282 42.9
Hma1.2p1_0192F.1_g083560 Hydrangea macrophylla HOM05D005940 ORTHO05D007027 1.6e-46 190.7 182 57.7
SHI28162 Sapria himalayana HOM05D005940 ORTHO05D007027 7.7e-41 171.8 163 53.4
PGR142G2620 Punica granatum HOM05D005940 ORTHO05D007027 1.1e-39 167.9 246 43.5
Os02g0252600 Oryza sativa ssp. japonica HOM05D005940 ORTHO05D007027 1.5e-36 157.5 234 43.6
SEGI_22112 Sequoiadendron giganteum HOM05D005940 ORTHO05D007027 2.0e-36 157.1 228 44.3
Medtr1g030710 Medicago truncatula HOM05D005940 ORTHO05D007027 9.7e-36 154.8 225 41.8
SMO329G0058 Selaginella moellendorffii HOM05D005940 ORTHO05D007027 1.4e-34 151.0 273 39.9
AagrBONN_evm.TU.Sc2ySwM_344.1014 Anthoceros agrestis HOM05D005940 ORTHO05D007027 5.3e-34 149.1 274 37.2
Mapoly0016s0023 Marchantia polymorpha HOM05D005940 ORTHO05D007027 1.6e-33 147.5 279 39.8
Hund22470 Selenicereus undatus HOM05D005940 ORTHO05D007027 2.0e-33 147.1 272 36.4
Pp3c1_190 Physcomitrium patens HOM05D005940 ORTHO05D007027 3.5e-33 146.4 258 39.5
SMO201G0153 Selaginella moellendorffii HOM05D005940 ORTHO05D007027 2.5e-31 140.2 272 38.2
Sc06g0001810 Simmondsia chinensis HOM05D005940 ORTHO05D007027 3.5e-25 119.8 84 72.6
FAN06G2675 Fragaria x ananassa HOM05D005940 ORTHO05D007027 8.5e-24 115.2 237 38.4
SHI28160 Sapria himalayana HOM05D000105 ORTHO05D000023 8.0e-22 108.6 74 70.3
unitig_46.g18613 Utricularia gibba HOM05D005940 ORTHO05D007027 2.3e-21 107.1 114 49.1
BcaNung04643 Brassica carinata HOM05D005940 ORTHO05D007027 4.4e-20 102.8 184 41.3
CBR_g3301 Chara braunii HOM05D003248 ORTHO05D000301 2.1e-14 84.0 212 32.1
HPP92_019693 Vanilla planifolia HOM05D005940 ORTHO05D002769 3.4e-12 76.6 58 67.2
CSS0028355 Camellia sinensis var. sinensis HOM05D005940 ORTHO05D007027 4.1e-10 69.7 99 43.4
SMO112G0074 Selaginella moellendorffii HOM05D005940 ORTHO05D007027 7.8e-09 65.5 139 35.3
Cre01.g033516 Chlamydomonas reinhardtii HOM05D005940 ORTHO05D007027 3.3e-07 60.1 61 49.2


User provided reference genes

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