Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cpa.g.sc1.248 Carica papaya HOM05D007408 ORTHO05D009325 2.4e-75 285.4 143 100.0
Manes.06G075900 Manihot esculenta HOM05D007408 ORTHO05D009325 4.3e-32 141.7 149 53.7
Cfa008792 Carpinus fangiana HOM05D007408 ORTHO05D009325 1.6e-31 139.8 150 52.7
Haze_11804 Corylus avellana HOM05D007408 ORTHO05D009325 8.9e-30 134.0 135 57.8
Atru.chr11.1432 Acer truncatum HOM05D007408 ORTHO05D009325 2.0e-29 132.9 157 49.7
TWI79G0837 Tripterygium wilfordii HOM05D007408 ORTHO05D009325 3.2e-27 125.6 153 47.7
CiPaw.06G098200 Carya illinoinensis HOM05D007408 ORTHO05D009325 9.2e-27 124.0 155 47.7
Phvul.003G281600 Phaseolus vulgaris HOM05D007408 ORTHO05D009325 2.3e-25 119.4 127 51.2
PGR119G0146 Punica granatum HOM05D007408 ORTHO05D009325 3.0e-25 119.0 115 58.3
Glyma.16G099500 Glycine max HOM05D007408 ORTHO05D009325 5.0e-25 118.2 152 46.1
Eucgr.B03072 Eucalyptus grandis HOM05D007408 ORTHO05D009325 6.6e-25 117.9 141 49.6
Potri.008G111500 Populus trichocarpa HOM05D007408 ORTHO05D009325 6.6e-25 117.9 150 46.0
VMungo0251G2162 Vigna mungo HOM05D007408 ORTHO05D009325 6.6e-25 117.9 124 53.2
Thecc.02G364900 Theobroma cacao HOM05D007408 ORTHO05D009325 2.5e-24 115.9 123 56.9
Sabra08G0084200 Salix brachista HOM05D007408 ORTHO05D009325 7.3e-24 114.4 120 54.2
Cc11_g10990 Coffea canephora HOM05D007408 ORTHO05D009325 9.5e-24 114.0 153 46.4
DCAR_026703 Daucus carota HOM05D002818 ORTHO05D003244 2.1e-23 112.8 116 51.7
CANSAT64G2960 Cannabis sativa HOM05D007408 ORTHO05D009325 3.6e-23 112.1 169 44.4
BcaC06g31130 Brassica carinata HOM05D007408 ORTHO05D009325 4.7e-23 111.7 118 50.8
Gohir.A12G173800 Gossypium hirsutum HOM05D007408 ORTHO05D009325 8.0e-23 110.9 125 54.4
A06p42710 Brassica napus HOM05D007408 ORTHO05D009325 4.0e-22 108.6 115 51.3
BraA06t27184Z Brassica rapa HOM05D007408 ORTHO05D009325 4.0e-22 108.6 115 51.3
Prupe.1G301300 Prunus persica HOM05D007408 ORTHO05D009325 4.0e-22 108.6 152 42.8
arahy.Tifrunner.gnm1.ann1.24G1QJ Arachis hypogaea HOM05D007408 ORTHO05D009325 5.2e-22 108.2 144 44.4
BcaC06g33976 Brassica carinata HOM05D007408 ORTHO05D009325 6.8e-22 107.8 115 50.4
Gohir.D12G176300 Gossypium hirsutum HOM05D007408 ORTHO05D009325 8.9e-22 107.5 124 53.2
Gorai.008G188700 Gossypium raimondii HOM05D007408 ORTHO05D009325 8.9e-22 107.5 124 53.2
C07p34420 Brassica napus HOM05D007408 ORTHO05D009325 1.2e-21 107.1 115 50.4
SGA_v2.0_scaffold36G14509 Striga asiatica HOM05D007408 ORTHO05D009325 1.5e-21 106.7 141 44.7
Lalb_Chr20g0122411 Lupinus albus HOM05D007408 ORTHO05D009325 2.0e-21 106.3 121 49.6
Lsat_1_v5_gn_3_60200 Lactuca sativa HOM05D007408 ORTHO05D009325 5.8e-21 104.8 138 45.7
RcHm_v2.0_Chr4g0436431 Rosa chinensis HOM05D007408 ORTHO05D009325 5.8e-21 104.8 121 50.4
Medtr8g069910 Medicago truncatula HOM05D007408 ORTHO05D009325 7.5e-21 104.4 145 42.1
Oeu024124.1 Olea europaea HOM05D007408 ORTHO05D009325 1.3e-20 103.6 145 44.1
AT3G25597 Arabidopsis thaliana HOM05D007408 ORTHO05D009325 2.2e-20 102.8 115 47.8
Ciclev10033573m.g Citrus clementina HOM05D007408 ORTHO05D009325 2.2e-20 102.8 110 53.6
HanXRQChr12g0365241 Helianthus annuus HOM05D007408 ORTHO05D009325 2.2e-20 102.8 132 42.4
Lj4g0027659 Lotus japonicus HOM05D007408 ORTHO05D009325 2.2e-20 102.8 126 49.2
TAR629G0610 Trochodendron aralioides HOM05D007408 ORTHO05D009325 2.9e-20 102.4 144 47.9
Carub.0005s0338 Capsella rubella HOM05D007408 ORTHO05D009325 3.7e-20 102.1 120 47.5
CARHR146570 Cardamine hirsuta HOM05D007408 ORTHO05D009325 6.4e-20 101.3 116 48.3
HanXRQChr15g0475971 Helianthus annuus HOM05D007408 ORTHO05D009325 8.3e-20 100.9 125 48.8
MD13G1050800 Malus domestica HOM05D007408 ORTHO05D009325 8.3e-20 100.9 123 48.8
TPR.G24816 Trifolium pratense HOM05D007408 ORTHO05D009325 8.3e-20 100.9 126 50.8
HanXRQChr17g0551421 Helianthus annuus HOM05D007408 ORTHO05D009325 1.1e-19 100.5 141 44.0
Sp2g14870 Schrenkiella parvula HOM05D007408 ORTHO05D009325 1.1e-19 100.5 117 49.6
AL5G14110 Arabidopsis lyrata HOM05D007408 ORTHO05D009325 1.9e-19 99.8 119 47.9
BraA02t08410Z Brassica rapa HOM05D007408 ORTHO05D009325 4.1e-19 98.6 133 45.1
THA.LOC104805235 Tarenaya hassleriana HOM05D007408 ORTHO05D009325 4.1e-19 98.6 142 43.0
A02p33920 Brassica napus HOM05D007408 ORTHO05D009325 7.0e-19 97.8 133 43.6
FAN07G2148 Fragaria x ananassa HOM05D000085 ORTHO05D000274 7.0e-19 97.8 116 45.7
FAN12G0389 Fragaria x ananassa HOM05D000085 ORTHO05D000274 7.0e-19 97.8 116 45.7
FAN17G1226 Fragaria x ananassa HOM05D000085 ORTHO05D000274 7.0e-19 97.8 116 45.7
Thhalv10005058m.g Eutrema salsugineum HOM05D007408 ORTHO05D009325 9.2e-19 97.4 116 48.3
FAN22G2286 Fragaria x ananassa HOM05D000227 ORTHO05D001491 9.2e-19 97.4 116 45.7
BcaC03g17274 Brassica carinata HOM05D007408 ORTHO05D009325 2.7e-18 95.9 133 42.1
C02p52180 Brassica napus HOM05D007408 ORTHO05D009325 2.7e-18 95.9 133 42.1
BolC2t11303H Brassica oleracea HOM05D007408 ORTHO05D009325 2.7e-18 95.9 133 42.1
Sc11g0002930 Simmondsia chinensis HOM05D007408 ORTHO05D009325 2.7e-18 95.9 146 40.4
THA.LOC104822179 Tarenaya hassleriana HOM05D007408 ORTHO05D009325 4.6e-18 95.1 113 43.4
BcaB07g30265 Brassica carinata HOM05D007408 ORTHO05D009325 1.1e-16 90.5 119 44.5
Migut.L01119 Erythranthe guttata HOM05D007408 ORTHO05D009325 1.1e-16 90.5 128 39.1
Solyc05g010130.1 Solanum lycopersicum HOM05D007408 ORTHO05D009325 1.9e-16 89.7 134 40.3
AL1G39610 Arabidopsis lyrata HOM05D007408 ORTHO05D009325 4.3e-16 88.6 118 44.9
Ah.02g127260 Amaranthus hybridus HOM05D007408 ORTHO05D009325 7.3e-16 87.8 154 35.7
SalBow8G1270 Salvia bowleyana HOM05D007408 ORTHO05D009325 9.5e-16 87.4 117 44.4
SalBow8G3082 Salvia bowleyana HOM05D007408 ORTHO05D009325 9.5e-16 87.4 117 44.4
CsaV3_2G010890 Cucumis sativus L. HOM05D007408 ORTHO05D009325 1.2e-15 87.0 116 44.0
CARHR061510 Cardamine hirsuta HOM05D007408 ORTHO05D009325 1.6e-15 86.7 113 39.8
AT1G26140 Arabidopsis thaliana HOM05D007408 ORTHO05D009325 2.8e-15 85.9 119 41.2
Psat4g113200 Pisum sativum HOM05D007408 ORTHO05D009325 3.6e-15 85.5 137 38.7
Sp1g22520 Schrenkiella parvula HOM05D007408 ORTHO05D009325 3.6e-15 85.5 115 41.7
A08p27160 Brassica napus HOM05D007408 ORTHO05D009325 4.7e-15 85.1 115 40.9
BolC7t43970H Brassica oleracea HOM05D007408 ORTHO05D009325 4.7e-15 85.1 105 46.7
C03p72700 Brassica napus HOM05D007408 ORTHO05D009325 8.1e-15 84.3 115 42.6
BolC3t19568H Brassica oleracea HOM05D007408 ORTHO05D009325 8.1e-15 84.3 115 42.6
BcaC05g26429 Brassica carinata HOM05D007408 ORTHO05D009325 1.1e-14 84.0 115 39.1
C05p24760 Brassica napus HOM05D007408 ORTHO05D009325 1.1e-14 84.0 115 39.1
BraA08t34661Z Brassica rapa HOM05D007408 ORTHO05D009325 6.8e-14 81.3 115 40.0
Thhalv10009687m.g Eutrema salsugineum HOM05D007408 ORTHO05D009325 8.9e-14 80.9 115 38.3
Aqoxy3G03838 Aquilegia oxysepala HOM05D007408 ORTHO05D009325 2.0e-13 79.7 154 37.7
AT1G68700 Arabidopsis thaliana HOM05D007408 ORTHO05D009325 2.6e-13 79.3 124 37.9
CARHR025780 Cardamine hirsuta HOM05D007408 ORTHO05D009325 5.8e-13 78.2 116 42.2
Manes.14G095101 Manihot esculenta HOM05D007408 ORTHO05D009325 5.8e-13 78.2 49 75.5
Sp5g23800 Schrenkiella parvula HOM05D007408 ORTHO05D009325 1.3e-12 77.0 112 34.8
A09p39710 Brassica napus HOM05D007408 ORTHO05D009325 2.2e-12 76.3 115 36.5
BraA09t39470Z Brassica rapa HOM05D007408 ORTHO05D009325 2.2e-12 76.3 115 36.5
BcaB03g15446 Brassica carinata HOM05D007408 ORTHO05D009325 3.7e-12 75.5 117 37.6
BcaB03g15828 Brassica carinata HOM05D007408 ORTHO05D009325 6.4e-12 74.7 115 33.0
Carub.0001s2482 Capsella rubella HOM05D007408 ORTHO05D009325 8.3e-12 74.3 116 40.5
Sed0018728 Sechium edule HOM05D007408 ORTHO05D009325 8.3e-12 74.3 138 36.2
BcaC08g46321 Brassica carinata HOM05D000085 ORTHO05D000274 1.9e-11 73.2 112 34.8
BolC6t39308H Brassica oleracea HOM05D000085 ORTHO05D000274 1.9e-11 73.2 112 34.8
C06p41170 Brassica napus HOM05D000085 ORTHO05D000274 2.4e-11 72.8 112 33.9
PSO782G1144 Papaver somniferum HOM05D007408 ORTHO05D009325 3.2e-11 72.4 116 40.5
BraA07t30814Z Brassica rapa HOM05D007408 ORTHO05D009325 4.1e-11 72.0 119 36.1
A07p31850 Brassica napus HOM05D007408 ORTHO05D009325 5.4e-11 71.6 119 36.1
A07p35100 Brassica napus HOM05D000085 ORTHO05D000274 9.2e-11 70.9 112 34.8
BraA07t31103Z Brassica rapa HOM05D000085 ORTHO05D000274 9.2e-11 70.9 112 34.8
MELO3C020393.2 Cucumis melo HOM05D007408 ORTHO05D009325 3.5e-10 68.9 125 38.4
C06p37420 Brassica napus HOM05D007408 ORTHO05D009325 1.3e-09 67.0 119 34.5
Carub.0002s1524 Capsella rubella HOM05D007408 ORTHO05D009325 1.5e-08 63.5 107 29.9
Lsat_1_v5_gn_8_37901 Lactuca sativa HOM05D007408 ORTHO05D009325 1.9e-08 63.2 112 38.4
HPP92_003114 Vanilla planifolia HOM05D007408 ORTHO05D009325 2.5e-08 62.8 114 36.8
HPP92_003100 Vanilla planifolia HOM05D007408 ORTHO05D009325 7.3e-08 61.2 54 55.6
BolC6t38845H Brassica oleracea HOM05D000085 ORTHO05D000274 2.8e-07 59.3 112 33.9
EL10Ac6g14549 Beta vulgaris HOM05D007408 ORTHO05D009325 4.7e-07 58.5 121 36.4
BcaC08g43155 Brassica carinata HOM05D007408 ORTHO05D009325 6.2e-07 58.2 113 33.6
PSO063G0414 Papaver somniferum HOM05D007408 ORTHO05D009325 8.1e-07 57.8 119 37.8
ECA233G1102 Erigeron canadensis HOM05D002818 ORTHO05D003244 1.1e-06 57.4 97 32.0
Thhalv10019756m.g Eutrema salsugineum HOM05D007408 ORTHO05D009325 8.9e-06 54.3 57 42.1


User provided reference genes

Program Settings