Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cpa.g.sc1.168 Carica papaya HOM05D004085 ORTHO05D005189 5.6e-186 654.1 315 100.0
Duzib251G0046 Durio zibethinus HOM05D004085 ORTHO05D005189 5.0e-150 534.6 317 79.8
arahy.Tifrunner.gnm1.ann1.34XV9Z Arachis hypogaea HOM05D004085 ORTHO05D005189 4.6e-148 528.1 316 78.2
Manes.05G115200 Manihot esculenta HOM05D004085 ORTHO05D005189 6.1e-148 527.7 317 77.9
Phvul.003G280600 Phaseolus vulgaris HOM05D004085 ORTHO05D005189 3.9e-147 525.0 316 77.2
Thecc.02G322800 Theobroma cacao HOM05D004085 ORTHO05D005189 2.0e-146 522.7 317 77.3
Ciclev10032152m.g Citrus clementina HOM05D004085 ORTHO05D005189 5.7e-146 521.2 317 77.0
Lj4g0023791 Lotus japonicus HOM05D004085 ORTHO05D005189 2.8e-145 518.8 316 75.6
Lalb_Chr20g0117031 Lupinus albus HOM05D004085 ORTHO05D005189 2.8e-145 518.8 314 77.1
Atru.chr11.1559 Acer truncatum HOM05D004085 ORTHO05D005189 3.7e-145 518.5 317 76.7
CANSAT64G3016 Cannabis sativa HOM05D004085 ORTHO05D005189 3.7e-145 518.5 316 77.2
Gohir.A03G106500 Gossypium hirsutum HOM05D004085 ORTHO05D005189 3.7e-145 518.5 320 76.6
Glyma.05G183800 Glycine max HOM05D004085 ORTHO05D005189 6.3e-145 517.7 316 75.9
CiPaw.05G122000 Carya illinoinensis HOM05D004085 ORTHO05D005189 8.2e-145 517.3 319 76.2
THA.LOC104805212 Tarenaya hassleriana HOM05D004085 ORTHO05D005189 1.1e-144 516.9 319 77.4
Gorai.005G147600 Gossypium raimondii HOM05D004085 ORTHO05D005189 3.1e-144 515.4 320 76.6
BcaC06g31165 Brassica carinata HOM05D004085 ORTHO05D005189 4.1e-144 515.0 313 77.0
Gohir.D02G131700 Gossypium hirsutum HOM05D004085 ORTHO05D005189 1.5e-143 513.1 320 76.2
Dinv34021 Davidia involucrata HOM05D004085 ORTHO05D005189 3.4e-143 511.9 317 76.7
CsaV3_6G033900 Cucumis sativus L. HOM05D004085 ORTHO05D005189 7.7e-143 510.8 318 75.5
Prupe.1G293400 Prunus persica HOM05D004085 ORTHO05D005189 1.7e-142 509.6 319 75.9
CARHR146210 Cardamine hirsuta HOM05D004085 ORTHO05D005189 3.8e-142 508.4 313 75.7
BcaC06g31143 Brassica carinata HOM05D004085 ORTHO05D005189 5.0e-142 508.1 313 76.0
VMungo0251G3520 Vigna mungo HOM05D004085 ORTHO05D005189 5.0e-142 508.1 337 71.5
Psat4g118760 Pisum sativum HOM05D004085 ORTHO05D005189 8.5e-142 507.3 313 74.4
TWI75G0426 Tripterygium wilfordii HOM05D004085 ORTHO05D005189 8.5e-142 507.3 318 75.8
Thhalv10004640m.g Eutrema salsugineum HOM05D004085 ORTHO05D005189 1.1e-141 506.9 313 76.0
Medtr8g066120 Medicago truncatula HOM05D004085 ORTHO05D005189 1.1e-141 506.9 313 74.4
C07p34240 Brassica napus HOM05D004085 ORTHO05D005189 1.4e-141 506.5 313 75.7
BolC7t43952H Brassica oleracea HOM05D004085 ORTHO05D005189 1.4e-141 506.5 313 75.7
ClCG08G010600 Citrullus lanatus HOM05D004085 ORTHO05D005189 2.5e-141 505.8 318 74.5
A06p42850 Brassica napus HOM05D004085 ORTHO05D005189 5.5e-141 504.6 313 75.4
Psat4g122760 Pisum sativum HOM05D004085 ORTHO05D005189 5.5e-141 504.6 313 74.1
Eucgr.J01102 Eucalyptus grandis HOM05D004085 ORTHO05D005189 7.2e-141 504.2 317 75.1
MELO3C011402.2 Cucumis melo HOM05D004085 ORTHO05D005189 9.4e-141 503.8 318 75.2
BraA06t27197Z Brassica rapa HOM05D004085 ORTHO05D005189 1.2e-140 503.4 313 75.4
Ca_22870_v3 Cicer arietinum L. HOM05D004085 ORTHO05D005189 1.2e-140 503.4 315 74.6
MD16G1055900 Malus domestica HOM05D004085 ORTHO05D005189 2.1e-140 502.7 322 73.6
AL5G13590 Arabidopsis lyrata HOM05D004085 ORTHO05D005189 4.7e-140 501.5 317 73.8
Lalb_Chr15g0084991 Lupinus albus HOM05D004085 ORTHO05D005189 4.7e-140 501.5 316 74.7
Sp2g14620 Schrenkiella parvula HOM05D004085 ORTHO05D005189 6.1e-140 501.1 313 74.8
BcaC03g17242 Brassica carinata HOM05D004085 ORTHO05D005189 1.4e-139 500.0 313 74.8
Cfa008850 Carpinus fangiana HOM05D004085 ORTHO05D005189 1.8e-139 499.6 304 76.3
MD13G1056600 Malus domestica HOM05D004085 ORTHO05D005189 1.8e-139 499.6 322 73.9
C02p51780 Brassica napus HOM05D004085 ORTHO05D005189 3.0e-139 498.8 313 74.4
Carub.0005s0294 Capsella rubella HOM05D004085 ORTHO05D005189 3.0e-139 498.8 315 74.3
Nn4g23533 Nelumbo nucifera HOM05D004085 ORTHO05D005189 3.0e-139 498.8 317 73.8
PGR102G0161 Punica granatum HOM05D004085 ORTHO05D005189 3.0e-139 498.8 315 74.6
BolC2t11263H Brassica oleracea HOM05D004085 ORTHO05D005189 3.9e-139 498.4 313 74.4
Aa31LG2G6920 Aethionema arabicum HOM05D004085 ORTHO05D005189 5.2e-139 498.0 332 70.8
A02p33630 Brassica napus HOM05D004085 ORTHO05D005189 1.5e-138 496.5 313 74.1
Sed0007813 Sechium edule HOM05D004085 ORTHO05D005189 1.5e-138 496.5 321 74.1
BcaB07g30279 Brassica carinata HOM05D004085 ORTHO05D005189 3.3e-138 495.4 313 74.8
Actinidia07768 Actinidia chinensis HOM05D004085 ORTHO05D005189 7.4e-138 494.2 322 73.6
Haze_11859 Corylus avellana HOM05D004085 ORTHO05D005189 7.4e-138 494.2 370 65.1
Sc14g0007770 Simmondsia chinensis HOM05D004085 ORTHO05D005189 9.7e-138 493.8 320 74.1
PGSC0003DMG400001937 Solanum tuberosum HOM05D004085 ORTHO05D005189 2.8e-137 492.3 319 73.4
AL3G42500 Arabidopsis lyrata HOM05D004085 ORTHO05D005189 3.7e-137 491.9 317 73.2
Nitab4.5_0001071g0010 Nicotiana tabacum HOM05D004085 ORTHO05D005189 6.3e-137 491.1 319 72.4
Peaxi162Scf00873g00113 Petunia axillaris HOM05D004085 ORTHO05D005189 8.2e-137 490.7 319 72.7
AT2G03800 Arabidopsis thaliana HOM05D004085 ORTHO05D005189 1.1e-136 490.3 317 72.6
Rhsim09G0122200 Rhododendron simsii HOM05D004085 ORTHO05D005189 4.1e-136 488.4 317 71.9
Sopen04g001280 Solanum pennellii HOM05D004085 ORTHO05D005189 1.6e-135 486.5 318 72.6
CSS0028863 Camellia sinensis var. sinensis HOM05D004085 ORTHO05D005189 5.9e-135 484.6 316 73.1
PSO409G0049 Papaver somniferum HOM05D004085 ORTHO05D005189 5.9e-135 484.6 319 72.1
RcHm_v2.0_Chr4g0437351 Rosa chinensis HOM05D004085 ORTHO05D005189 7.7e-135 484.2 318 72.3
PSO063G3410 Papaver somniferum HOM05D004085 ORTHO05D005189 1.0e-134 483.8 319 71.8
Aqoxy3G03746 Aquilegia oxysepala HOM05D004085 ORTHO05D005189 1.7e-134 483.0 317 71.0
Nitab4.5_0000591g0050 Nicotiana tabacum HOM05D004085 ORTHO05D005189 1.7e-134 483.0 314 72.3
Hma1.2p1_0428F.1_g150850 Hydrangea macrophylla HOM05D004085 ORTHO05D005189 2.9e-134 482.3 318 72.3
vmacro10475 Vaccinium macrocarpon HOM05D004085 ORTHO05D005189 3.8e-134 481.9 317 71.6
Dinv07974 Davidia involucrata HOM05D004085 ORTHO05D005189 9.4e-133 477.2 325 71.1
Duzib248G1362 Durio zibethinus HOM05D004085 ORTHO05D005189 1.2e-132 476.9 317 73.2
Migut.D01616 Erythranthe guttata HOM05D004085 ORTHO05D005189 1.2e-132 476.9 317 70.0
Cc11_g11560 Coffea canephora HOM05D004085 ORTHO05D005189 1.6e-132 476.5 319 71.5
DCAR_007209 Daucus carota HOM05D004085 ORTHO05D005189 3.6e-132 475.3 317 69.7
Hma1.2p1_0595F.1_g186285 Hydrangea macrophylla HOM05D004085 ORTHO05D005189 3.6e-132 475.3 313 71.2
TAR629G1999 Trochodendron aralioides HOM05D004085 ORTHO05D005189 4.7e-132 474.9 317 71.9
Ah.03g138610 Amaranthus hybridus HOM05D004085 ORTHO05D005189 3.0e-131 472.2 316 69.6
GSVIVG01008152001 Vitis vinifera HOM05D004085 ORTHO05D005189 5.2e-131 471.5 317 69.7
Nitab4.5_0002863g0020 Nicotiana tabacum HOM05D004085 ORTHO05D005189 8.8e-131 470.7 316 70.3
Lj3A1027G87 Lonicera japonica HOM05D004085 ORTHO05D005189 1.5e-130 469.9 369 63.1
HanXRQChr05g0157451 Helianthus annuus HOM05D004085 ORTHO05D005189 2.6e-130 469.2 315 70.5
FAN12G2772 Fragaria x ananassa HOM05D004085 ORTHO05D005189 4.4e-130 468.4 317 71.6
FAN22G1834 Fragaria x ananassa HOM05D004085 ORTHO05D005189 5.7e-130 468.0 317 71.3
MSTRG.7728 Avicennia marina HOM05D004085 ORTHO05D005189 7.5e-130 467.6 318 68.6
DCAR_011575 Daucus carota HOM05D004085 ORTHO05D005189 7.5e-130 467.6 317 67.5
Hund25155 Selenicereus undatus HOM05D004085 ORTHO05D005189 7.5e-130 467.6 393 61.8
HanXRQChr12g0365061 Helianthus annuus HOM05D004085 ORTHO05D005189 2.2e-129 466.1 317 69.1
PGSC0003DMG402004079 Solanum tuberosum HOM05D004085 ORTHO05D005189 2.8e-129 465.7 316 69.9
CAN.G587.59 Capsicum annuum HOM05D004085 ORTHO05D005189 3.7e-129 465.3 316 69.6
Sopen06g026660 Solanum pennellii HOM05D004085 ORTHO05D005189 1.8e-128 463.0 316 69.3
PGR044G1995 Punica granatum HOM05D004085 ORTHO05D005189 2.4e-128 462.6 324 68.2
MSTRG.779 Avicennia marina HOM05D004085 ORTHO05D005189 3.1e-128 462.2 316 69.3
Solyc06g069390.4 Solanum lycopersicum HOM05D004085 ORTHO05D005189 5.3e-128 461.5 316 69.3
SalBow2G2246 Salvia bowleyana HOM05D004085 ORTHO05D005189 9.1e-128 460.7 318 69.2
Os08g0339200 Oryza sativa ssp. japonica HOM05D004085 ORTHO05D005189 1.6e-127 459.9 318 68.9
ECA233G2807 Erigeron canadensis HOM05D004085 ORTHO05D005189 2.9e-126 455.7 317 67.5
ATR0691G189 Amborella trichopoda HOM05D004085 ORTHO05D005189 3.8e-126 455.3 317 67.8
ECA246G2852 Erigeron canadensis HOM05D004085 ORTHO05D005189 8.5e-126 454.1 313 68.1
CSS0006421 Camellia sinensis var. sinensis HOM05D004085 ORTHO05D005189 1.9e-125 453.0 316 69.6
Lsat_1_v5_gn_5_23401 Lactuca sativa HOM05D004085 ORTHO05D005189 1.9e-125 453.0 313 68.7
Potri.015G048700 Populus trichocarpa HOM05D004085 ORTHO05D005189 9.4e-125 450.7 319 67.4
Peaxi162Scf00013g00834 Petunia axillaris HOM05D004085 ORTHO05D005189 1.2e-124 450.3 308 70.8
Gohir.D11G037500 Gossypium hirsutum HOM05D004085 ORTHO05D005189 2.1e-124 449.5 317 65.9
Gorai.007G040300 Gossypium raimondii HOM05D004085 ORTHO05D005189 2.1e-124 449.5 317 65.9
Manes.06G081100 Manihot esculenta HOM05D004085 ORTHO05D005189 2.7e-124 449.1 319 66.5
CSS0016924 Camellia sinensis var. sinensis HOM05D004085 ORTHO05D005189 6.1e-124 448.0 315 69.2
Sabra15G0078600 Salix brachista HOM05D004085 ORTHO05D005189 6.1e-124 448.0 319 67.4
AUR62007873 Chenopodium quinoa HOM05D004085 ORTHO05D005189 6.8e-123 444.5 317 66.6
Zm00001eb276680 Zea mays HOM05D004085 ORTHO05D005189 8.8e-123 444.1 321 64.8
CDE01G0369 Ceratophyllum demersum HOM05D004085 ORTHO05D005189 1.5e-122 443.4 317 65.9
AUR62003058 Chenopodium quinoa HOM05D004085 ORTHO05D005189 9.8e-122 440.7 317 65.6
EL10Ac6g14673 Beta vulgaris HOM05D004085 ORTHO05D005189 1.7e-121 439.9 339 63.7
Lsat_1_v5_gn_8_36601 Lactuca sativa HOM05D004085 ORTHO05D005189 2.8e-121 439.1 313 67.1
CSS0030921 Camellia sinensis var. sinensis HOM05D004085 ORTHO05D005189 1.6e-119 433.3 319 67.4
FAN07G2517 Fragaria x ananassa HOM05D004085 ORTHO05D005189 2.7e-119 432.6 404 56.4
Nitab4.5_0002449g0030 Nicotiana tabacum HOM05D004085 ORTHO05D005189 7.7e-119 431.0 316 66.8
COL.COLO4_27493 Corchorus olitorius HOM05D004085 ORTHO05D005189 1.6e-116 423.3 294 66.3
Mapoly0007s0171 Marchantia polymorpha HOM05D004085 ORTHO05D005189 6.3e-113 411.4 326 61.3
SGA_v2.0_scaffold36G14490 Striga asiatica HOM05D004085 ORTHO05D005189 8.3e-113 411.0 318 63.2
HPP92_003714 Vanilla planifolia HOM05D004085 ORTHO05D005189 2.7e-111 406.0 290 67.6
Migut.L01162 Erythranthe guttata HOM05D004085 ORTHO05D005189 4.5e-111 405.2 285 66.7
MBI14_g08107_MAGBIO Magnolia biondii HOM05D004085 ORTHO05D005189 6.1e-108 394.8 269 69.1
Lj5A137T62 Lonicera japonica HOM05D004085 ORTHO05D005189 6.8e-107 391.3 291 66.7
Gohir.A11G034100 Gossypium hirsutum HOM05D004085 ORTHO05D005189 4.4e-106 388.7 317 59.0
COL.COLO4_27802 Corchorus olitorius HOM05D004085 ORTHO05D005189 1.7e-105 386.7 323 61.3
SHI14335 Sapria himalayana HOM05D004085 ORTHO05D005189 4.9e-105 385.2 334 58.1
Cpa.g.sc3.236 Carica papaya HOM05D004085 ORTHO05D005189 1.1e-101 374.0 338 54.4
MD16G1055500 Malus domestica HOM05D004085 ORTHO05D005189 1.5e-101 373.6 307 62.2
SMO146G0350 Selaginella moellendorffii HOM05D004085 ORTHO05D005189 1.6e-100 370.2 323 55.7
Pp3c4_31680 Physcomitrium patens HOM05D004085 ORTHO05D005189 6.2e-100 368.2 319 56.4
BraA02t08382Z Brassica rapa HOM05D004085 ORTHO05D005189 1.1e-99 367.5 232 73.3
AagrBONN_evm.TU.Sc2ySwM_344.2928 Anthoceros agrestis HOM05D004085 ORTHO05D005189 1.8e-99 366.7 317 56.2
Pp3c3_10070 Physcomitrium patens HOM05D004085 ORTHO05D005189 9.8e-98 360.9 317 57.4
Nn3g17533 Nelumbo nucifera HOM05D004085 ORTHO05D005189 2.9e-97 359.4 290 61.4
Eucgr.K02549 Eucalyptus grandis HOM05D004085 ORTHO05D005189 2.7e-95 352.8 316 54.7
Oeu045347.1 Olea europaea HOM05D004085 ORTHO05D005189 1.5e-93 347.1 244 69.3
CBR_g34346 Chara braunii HOM05D004085 ORTHO05D005189 5.6e-85 318.5 355 46.5
FvH4_4g29300 Fragaria vesca HOM05D004085 ORTHO05D005189 1.7e-81 307.0 200 73.0
arahy.Tifrunner.gnm1.ann1.A9XC2E Arachis hypogaea HOM05D004085 ORTHO05D005189 5.4e-80 302.0 185 74.6
PGSC0003DMG401004079 Solanum tuberosum HOM05D004085 ORTHO05D005189 2.4e-72 276.6 181 73.5
C07p34190 Brassica napus HOM05D004085 ORTHO05D005189 7.8e-71 271.6 185 70.3
unitig_22.g6891 Utricularia gibba HOM05D004085 ORTHO05D005189 3.9e-70 269.2 219 58.4
Os09g0248000 Oryza sativa ssp. japonica HOM05D004085 ORTHO05D005189 1.2e-63 247.7 165 67.9
CSS0002590 Camellia sinensis var. sinensis HOM05D004085 ORTHO05D005189 3.7e-60 236.1 303 46.5
TPR.G27985 Trifolium pratense HOM05D004085 ORTHO05D005189 4.0e-59 232.6 151 70.9
Oeu045348.1 Olea europaea HOM05D004085 ORTHO05D005189 2.4e-56 223.4 145 74.5
Solyc04g005300.4 Solanum lycopersicum HOM05D004085 ORTHO05D005189 5.8e-50 202.2 142 69.0
MBI10_g36395_MAGBIO Magnolia biondii HOM05D004085 ORTHO05D005189 1.8e-43 180.6 147 57.1
BolC7t43946H Brassica oleracea HOM05D004085 ORTHO05D005189 3.6e-39 166.4 99 73.7
Peaxi162Scf00098g00096 Petunia axillaris HOM05D004085 ORTHO05D005189 6.1e-39 165.6 130 62.3
HPP92_003722 Vanilla planifolia HOM05D004085 ORTHO05D005189 5.3e-35 152.5 118 62.7
MD05G1127700 Malus domestica HOM05D004085 ORTHO05D005189 9.1e-35 151.8 93 75.3
SEGI_05680 Sequoiadendron giganteum HOM05D004085 ORTHO05D005189 9.1e-35 151.8 112 65.2
BolC7t43934H Brassica oleracea HOM05D004085 ORTHO05D005189 1.0e-33 148.3 105 69.5
TPR.G3316 Trifolium pratense HOM05D004085 ORTHO05D026373 2.5e-32 143.7 85 75.3
TPR.G40588 Trifolium pratense HOM05D004085 ORTHO05D005189 1.2e-26 124.8 69 73.9
Lj3C737G8 Lonicera japonica HOM05D004085 ORTHO05D005189 2.2e-25 120.6 75 69.3
BcaC06g31148 Brassica carinata HOM05D004085 ORTHO05D005189 4.4e-21 106.3 72 69.4
Duzib068G1264 Durio zibethinus HOM05D004085 ORTHO05D005189 9.7e-21 105.1 67 65.7
SEGI_34269 Sequoiadendron giganteum HOM05D004085 ORTHO05D005189 6.3e-20 102.4 58 75.9
Thecc.03G108100 Theobroma cacao HOM05D004085 ORTHO05D026373 6.3e-20 102.4 85 55.3
Actinidia04797 Actinidia chinensis HOM05D004085 ORTHO05D026373 8.2e-20 102.1 75 64.0
Lj5A720T31 Lonicera japonica HOM05D004085 ORTHO05D026373 1.6e-18 97.8 170 36.5
Ciclev10024148m.g Citrus clementina HOM05D004085 ORTHO05D043374 3.1e-11 73.6 43 76.7
CANSAT64G2585 Cannabis sativa HOM05D004085 ORTHO05D043374 2.0e-10 70.9 55 65.5
BolC7t43945H Brassica oleracea HOM05D004085 ORTHO05D005189 9.4e-08 62.0 43 67.4
HPP92_003723 Vanilla planifolia HOM05D004085 ORTHO05D005189 1.0e-06 58.5 77 46.8
Eucgr.B03119 Eucalyptus grandis HOM05D004085 ORTHO05D195170 5.2e-06 56.2 56 48.2


User provided reference genes

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