Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cpa.g.sc1.160 Carica papaya HOM05D004533 ORTHO05D005347 1.4e-147 526.6 329 100.0
Duzib248G0866 Durio zibethinus HOM05D004533 ORTHO05D005347 3.4e-77 292.7 342 62.0
Duzib251G0596 Durio zibethinus HOM05D004533 ORTHO05D005347 1.4e-75 287.3 343 64.1
Thecc.02G326400 Theobroma cacao HOM05D004533 ORTHO05D005347 9.4e-75 284.6 343 64.7
Duzib268G0904 Durio zibethinus HOM05D004533 ORTHO05D005347 3.6e-74 282.7 343 60.6
Gohir.D13G084000 Gossypium hirsutum HOM05D004533 ORTHO05D005347 4.6e-74 282.3 342 59.9
Gorai.013G095800 Gossypium raimondii HOM05D004533 ORTHO05D005347 4.6e-74 282.3 342 59.9
Manes.01G025900 Manihot esculenta HOM05D004533 ORTHO05D005347 1.4e-73 280.8 344 61.9
Gohir.A13G084500 Gossypium hirsutum HOM05D004533 ORTHO05D005347 8.8e-73 278.1 342 59.6
Gohir.D02G131100 Gossypium hirsutum HOM05D004533 ORTHO05D005347 3.1e-70 269.6 345 58.3
Gohir.A03G105900 Gossypium hirsutum HOM05D004533 ORTHO05D005347 7.7e-69 265.0 345 51.6
Potri.010G154200 Populus trichocarpa HOM05D004533 ORTHO05D005347 5.0e-68 262.3 347 60.5
Gorai.005G147000 Gossypium raimondii HOM05D004533 ORTHO05D005347 6.5e-68 261.9 337 59.1
QL03p073504 Quercus lobata HOM05D004533 ORTHO05D005347 7.2e-67 258.5 340 58.2
Haze_11876 Corylus avellana HOM05D004533 ORTHO05D005347 1.0e-65 254.6 343 58.3
Sabra10G0118800 Salix brachista HOM05D004533 ORTHO05D005347 2.3e-65 253.4 350 58.6
Manes.05G112100 Manihot esculenta HOM05D004533 ORTHO05D005347 5.1e-65 252.3 341 61.0
CiPaw.05G123000 Carya illinoinensis HOM05D004533 ORTHO05D005347 1.5e-64 250.8 343 60.9
COL.COLO4_27845 Corchorus olitorius HOM05D004533 ORTHO05D005347 4.4e-64 249.2 349 65.3
Potri.008G098200 Populus trichocarpa HOM05D004533 ORTHO05D005347 7.4e-64 248.4 346 60.7
Sabra08G0074200 Salix brachista HOM05D004533 ORTHO05D005347 2.0e-61 240.4 348 60.3
Cfa008857 Carpinus fangiana HOM05D004533 ORTHO05D005347 1.7e-60 237.3 342 59.9
Dinv20147 Davidia involucrata HOM05D004533 ORTHO05D005347 2.9e-60 236.5 335 56.1
CiPaw.06G093700 Carya illinoinensis HOM05D004533 ORTHO05D005347 2.1e-58 230.3 338 57.7
Ciclev10032087m.g Citrus clementina HOM05D004533 ORTHO05D005347 1.0e-57 228.0 354 56.8
Atru.chr11.1592 Acer truncatum HOM05D004533 ORTHO05D005347 1.5e-56 224.2 355 59.4
Nn4g23503 Nelumbo nucifera HOM05D004533 ORTHO05D005347 1.4e-54 217.6 342 56.1
TAR371G0131 Trochodendron aralioides HOM05D004533 ORTHO05D005347 1.8e-54 217.2 341 56.6
Aqoxy3G03701 Aquilegia oxysepala HOM05D004533 ORTHO05D005347 3.5e-53 213.0 340 50.3
TAR629G1049 Trochodendron aralioides HOM05D004533 ORTHO05D005347 1.7e-52 210.7 334 43.7
Lalb_Chr10g0099071 Lupinus albus HOM05D004533 ORTHO05D005347 3.2e-51 206.5 340 53.2
Lj2g0015000 Lotus japonicus HOM05D004533 ORTHO05D005347 2.7e-50 203.4 341 52.5
Prupe.1G290400 Prunus persica HOM05D004533 ORTHO05D005347 3.6e-50 203.0 350 55.7
MD16G1058700 Malus domestica HOM05D004533 ORTHO05D005347 8.0e-50 201.8 336 53.0
Phvul.003G039500 Phaseolus vulgaris HOM05D004533 ORTHO05D005347 8.8e-49 198.4 360 51.7
MD13G1059400 Malus domestica HOM05D004533 ORTHO05D005347 5.7e-48 195.7 334 51.2
Medtr5g046750 Medicago truncatula HOM05D004533 ORTHO05D005347 8.2e-47 191.8 336 50.0
Cc11_g11730 Coffea canephora HOM05D004533 ORTHO05D005347 1.8e-46 190.7 347 48.4
MSTRG.2297 Avicennia marina HOM05D004533 ORTHO05D005347 4.1e-46 189.5 328 39.6
Lalb_Chr17g0341371 Lupinus albus HOM05D004533 ORTHO05D005347 1.2e-45 188.0 337 50.4
Eucgr.B03139 Eucalyptus grandis HOM05D004533 ORTHO05D005347 2.0e-45 187.2 348 49.1
Rhsim09G0125000 Rhododendron simsii HOM05D004533 ORTHO05D005347 2.7e-45 186.8 337 48.4
Hma1.2p1_3075F.1_g332390 Hydrangea macrophylla HOM05D004533 ORTHO05D005347 5.9e-45 185.7 353 41.6
Dinv34043 Davidia involucrata HOM05D004533 ORTHO05D005347 7.7e-45 185.3 339 49.6
Psat2g098360 Pisum sativum HOM05D004533 ORTHO05D005347 1.0e-44 184.9 332 47.9
FAN07G1881 Fragaria x ananassa HOM05D004533 ORTHO05D005347 1.7e-44 184.1 342 52.6
TWI75G1153 Tripterygium wilfordii HOM05D004533 ORTHO05D005347 5.0e-44 182.6 331 50.2
CSS0048067 Camellia sinensis var. sinensis HOM05D004533 ORTHO05D005347 1.1e-43 181.4 340 50.0
TPR.G38582 Trifolium pratense HOM05D004533 ORTHO05D005347 1.1e-43 181.4 325 51.7
FAN17G0049 Fragaria x ananassa HOM05D004533 ORTHO05D005347 1.9e-43 180.6 340 52.9
TWI79G0987 Tripterygium wilfordii HOM05D004533 ORTHO05D005347 2.5e-43 180.3 345 48.7
FvH4_4g29630 Fragaria vesca HOM05D004533 ORTHO05D005347 3.2e-43 179.9 342 52.3
FAN12G3098 Fragaria x ananassa HOM05D004533 ORTHO05D005347 3.2e-43 179.9 342 52.3
FAN22G0793 Fragaria x ananassa HOM05D004533 ORTHO05D005347 3.2e-43 179.9 340 52.4
Peaxi162Scf00175g00062 Petunia axillaris HOM05D004533 ORTHO05D005347 3.2e-43 179.9 336 49.7
Gohir.A12G159800 Gossypium hirsutum HOM05D004533 ORTHO05D005347 7.2e-43 178.7 330 50.0
TWI31G0640 Tripterygium wilfordii HOM05D004533 ORTHO05D005347 9.4e-43 178.3 341 49.3
Glyma.01G063800 Glycine max HOM05D004533 ORTHO05D005347 1.6e-42 177.6 366 46.7
Gorai.008G175700 Gossypium raimondii HOM05D004533 ORTHO05D005347 6.1e-42 175.6 332 41.9
THA.LOC104798855 Tarenaya hassleriana HOM05D004533 ORTHO05D005347 1.4e-41 174.5 341 47.8
THA.LOC104803161 Tarenaya hassleriana HOM05D004533 ORTHO05D005347 1.4e-41 174.5 341 47.8
THA.LOC104822894 Tarenaya hassleriana HOM05D004533 ORTHO05D005347 1.4e-41 174.5 341 47.8
Gohir.D12G163100 Gossypium hirsutum HOM05D004533 ORTHO05D005347 2.6e-40 170.2 321 48.9
TAR374G1471 Trochodendron aralioides HOM05D004533 ORTHO05D005347 4.4e-40 169.5 274 43.4
PSO017G3527 Papaver somniferum HOM05D004533 ORTHO05D005347 5.7e-40 169.1 354 39.0
Oeu028724.1 Olea europaea HOM05D004533 ORTHO05D005347 2.2e-39 167.2 328 46.6
Rhsim12G0073600 Rhododendron simsii HOM05D004533 ORTHO05D005347 2.2e-39 167.2 335 43.6
Ca_05043_v3 Cicer arietinum L. HOM05D004533 ORTHO05D005347 2.8e-39 166.8 324 50.3
Ca_19594_v3 Cicer arietinum L. HOM05D004533 ORTHO05D005347 2.8e-39 166.8 324 50.3
vmacro01308 Vaccinium macrocarpon HOM05D004533 ORTHO05D005347 3.1e-38 163.3 348 43.1
Sed0020971 Sechium edule HOM05D004533 ORTHO05D005347 1.6e-37 161.0 341 39.3
Hma1.2p1_0428F.1_g151070 Hydrangea macrophylla HOM05D004533 ORTHO05D005347 2.7e-37 160.2 234 47.0
PSO478G4496 Papaver somniferum HOM05D004533 ORTHO05D005347 7.7e-37 158.7 355 38.9
RcHm_v2.0_Chr4g0437861 Rosa chinensis HOM05D004533 ORTHO05D005347 1.0e-36 158.3 349 51.6
Carub.0002s1576 Capsella rubella HOM05D004533 ORTHO05D005347 1.7e-36 157.5 337 43.9
Actinidia26533 Actinidia chinensis HOM05D004533 ORTHO05D005347 3.8e-36 156.4 336 47.3
BcaB03g15876 Brassica carinata HOM05D004533 ORTHO05D005347 2.5e-35 153.7 341 46.9
Hma1.2p1_0473F.1_g160260 Hydrangea macrophylla HOM05D004533 ORTHO05D005347 2.5e-35 153.7 340 36.2
Glyma.02G121400 Glycine max HOM05D004533 ORTHO05D005347 5.5e-35 152.5 373 43.7
MSTRG.13457 Avicennia marina HOM05D004533 ORTHO05D005347 9.5e-35 151.8 335 42.4
Oeu048133.1 Olea europaea HOM05D004533 ORTHO05D005347 1.2e-34 151.4 338 42.0
Oeu048134.1 Olea europaea HOM05D004533 ORTHO05D005347 1.2e-34 151.4 338 42.0
BraA02t06624Z Brassica rapa HOM05D004533 ORTHO05D005347 2.1e-34 150.6 351 44.2
Sp5g24200 Schrenkiella parvula HOM05D004533 ORTHO05D005347 2.8e-34 150.2 329 46.5
ECA233G1177 Erigeron canadensis HOM05D004533 ORTHO05D005347 3.6e-34 149.8 333 39.3
ClCG08G010520 Citrullus lanatus HOM05D004533 ORTHO05D005347 2.3e-33 147.1 345 34.8
A02p15640 Brassica napus HOM05D004533 ORTHO05D005347 5.2e-33 146.0 351 44.2
Nitab4.5_0000027g0050 Nicotiana tabacum HOM05D004533 ORTHO05D005347 6.8e-33 145.6 322 50.6
BcaC08g46370 Brassica carinata HOM05D004533 ORTHO05D005347 8.9e-33 145.2 346 44.5
C06p40740 Brassica napus HOM05D004533 ORTHO05D005347 8.9e-33 145.2 346 44.5
BolC6t39358H Brassica oleracea HOM05D004533 ORTHO05D005347 8.9e-33 145.2 346 44.5
BraA07t31139Z Brassica rapa HOM05D004533 ORTHO05D005347 1.2e-32 144.8 340 45.0
Sc11g0002570 Simmondsia chinensis HOM05D004533 ORTHO05D005347 2.0e-32 144.1 338 47.0
MELO3C011411.2 Cucumis melo HOM05D004533 ORTHO05D005347 2.6e-32 143.7 356 35.4
THA.LOC104821996 Tarenaya hassleriana HOM05D004533 ORTHO05D005347 3.4e-32 143.3 345 46.7
Actinidia19907 Actinidia chinensis HOM05D004533 ORTHO05D005347 5.7e-32 142.5 320 45.6
A07p35490 Brassica napus HOM05D004533 ORTHO05D005347 9.8e-32 141.7 348 44.3
arahy.Tifrunner.gnm1.ann1.PV72KB Arachis hypogaea HOM05D004533 ORTHO05D005347 2.2e-31 140.6 380 46.1
C02p26000 Brassica napus HOM05D004533 ORTHO05D005347 8.3e-31 138.7 350 43.1
BolC2t08676H Brassica oleracea HOM05D004533 ORTHO05D005347 8.3e-31 138.7 344 44.2
CARHR062030 Cardamine hirsuta HOM05D004533 ORTHO05D005347 1.1e-30 138.3 341 45.2
Thhalv10018878m.g Eutrema salsugineum HOM05D004533 ORTHO05D005347 1.1e-30 138.3 342 44.7
AT1G69160 Arabidopsis thaliana HOM05D004533 ORTHO05D005347 1.8e-30 137.5 340 43.5
CsaV3_6G033770 Cucumis sativus L. HOM05D004533 ORTHO05D005347 1.8e-30 137.5 360 34.2
Nitab4.5_0006154g0010 Nicotiana tabacum HOM05D004533 ORTHO05D005347 1.8e-30 137.5 313 46.6
arahy.Tifrunner.gnm1.ann1.NK9Z7F Arachis hypogaea HOM05D004533 ORTHO05D005347 5.4e-30 136.0 370 45.7
Oeu020361.1 Olea europaea HOM05D004533 ORTHO05D005347 5.4e-30 136.0 303 40.6
MBI16_g39936_MAGBIO Magnolia biondii HOM05D004533 ORTHO05D005347 1.6e-29 134.4 315 40.6
VMungo1215G1442 Vigna mungo HOM05D004533 ORTHO05D005347 2.0e-29 134.0 226 55.3
Actinidia16147 Actinidia chinensis HOM05D004533 ORTHO05D005347 5.9e-29 132.5 336 43.8
DCAR_023748 Daucus carota HOM05D004533 ORTHO05D005347 5.9e-29 132.5 337 38.6
Lj6P776T6 Lonicera japonica HOM05D004533 ORTHO05D005347 5.9e-29 132.5 169 47.9
MSTRG.7732 Avicennia marina HOM05D004533 ORTHO05D005347 1.0e-28 131.7 334 42.5
ClCG05G023610 Citrullus lanatus HOM05D004533 ORTHO05D005347 1.3e-28 131.3 333 41.7
AL2G28250 Arabidopsis lyrata HOM05D004533 ORTHO05D005347 2.3e-28 130.6 344 43.6
EL10Ac6g15027 Beta vulgaris HOM05D004533 ORTHO05D005347 2.9e-28 130.2 288 42.4
Solyc05g012030.1 Solanum lycopersicum HOM05D004533 ORTHO05D005347 2.9e-28 130.2 337 47.8
SGA_v2.0_scaffold287G47174 Striga asiatica HOM05D004533 ORTHO05D005347 2.9e-28 130.2 350 44.3
BcaC03g15057 Brassica carinata HOM05D004533 ORTHO05D005347 1.9e-27 127.5 344 43.3
Lsat_1_v5_gn_8_45920 Lactuca sativa HOM05D004533 ORTHO05D005347 4.3e-27 126.3 336 43.5
ATR0827G049 Amborella trichopoda HOM05D004533 ORTHO05D005347 5.6e-27 125.9 317 42.0
CsaV3_5G033410 Cucumis sativus L. HOM05D004533 ORTHO05D005347 1.6e-26 124.4 317 34.1
HanXRQChr12g0363201 Helianthus annuus HOM05D004533 ORTHO05D005347 3.6e-26 123.2 331 41.4
Nn3g17512 Nelumbo nucifera HOM05D004533 ORTHO05D005347 8.0e-26 122.1 319 47.3
DCAR_026684 Daucus carota HOM05D004533 ORTHO05D005347 4.0e-25 119.8 345 33.0
PGSC0003DMG400028307 Solanum tuberosum HOM05D004533 ORTHO05D005347 1.2e-24 118.2 338 40.2
Ah.03g138730 Amaranthus hybridus HOM05D004533 ORTHO05D005347 1.5e-24 117.9 318 39.0
Sopen05g006810 Solanum pennellii HOM05D004533 ORTHO05D005347 1.7e-23 114.4 236 55.9
Actinidia13399 Actinidia chinensis HOM05D004533 ORTHO05D005347 3.7e-23 113.2 230 51.7
CANSAT64G2295 Cannabis sativa HOM05D004533 ORTHO05D005347 4.9e-23 112.8 400 45.0
Lsat_1_v5_gn_4_11700 Lactuca sativa HOM05D004533 ORTHO05D005347 6.4e-23 112.5 338 40.2
Aa31LG4G11830 Aethionema arabicum HOM05D004533 ORTHO05D005347 3.2e-22 110.2 308 45.8
Ah.02g126770 Amaranthus hybridus HOM05D004533 ORTHO05D005347 1.6e-21 107.8 339 38.3
ECA234G4159 Erigeron canadensis HOM05D004533 ORTHO05D005347 1.6e-21 107.8 335 34.6
MELO3C012160.2 Cucumis melo HOM05D004533 ORTHO05D005347 3.5e-21 106.7 317 32.5
DCAR_030051 Daucus carota HOM05D004533 ORTHO05D005347 3.9e-20 103.2 344 37.2
Sc04g0007440 Simmondsia chinensis HOM05D004533 ORTHO05D005347 3.3e-19 100.1 321 42.4
Sed0009680 Sechium edule HOM05D004533 ORTHO05D005347 2.1e-18 97.4 324 31.8
Migut.E00039 Erythranthe guttata HOM05D004533 ORTHO05D005347 3.1e-17 93.6 319 39.5
PGR102G1315 Punica granatum HOM05D004533 ORTHO05D005347 1.3e-15 88.2 343 38.8
BcaC08g45911 Brassica carinata HOM05D004533 ORTHO05D005347 2.2e-15 87.4 258 38.0
BcaC08g45912 Brassica carinata HOM05D004533 ORTHO05D005347 3.7e-15 86.7 260 37.7
PGR119G0103 Punica granatum HOM05D004533 ORTHO05D005347 4.1e-14 83.2 333 42.9
DCAR_007202 Daucus carota HOM05D004533 ORTHO05D005347 1.6e-13 81.3 318 31.8
PSO782G4709 Papaver somniferum HOM05D004533 ORTHO05D005347 7.8e-13 79.0 317 32.5
PSO063G5982 Papaver somniferum HOM05D004533 ORTHO05D005347 3.0e-12 77.0 317 29.0
BcaC08g45913 Brassica carinata HOM05D004533 ORTHO05D005347 2.8e-10 70.5 141 38.3
TAR381G0317 Trochodendron aralioides HOM05D004533 ORTHO05D005347 3.6e-10 70.1 117 41.0
GSVIVG01012248001 Vitis vinifera HOM05D004533 ORTHO05D005347 2.3e-09 67.4 69 52.2
TAR627G0820 Trochodendron aralioides HOM05D004533 ORTHO05D005347 2.0e-08 64.3 114 41.2
CDE02G4104 Ceratophyllum demersum HOM05D004533 ORTHO05D005347 2.9e-07 60.5 304 26.0
C06p37150 Brassica napus HOM05D004533 ORTHO05D005347 8.3e-07 58.9 184 38.6
Aa31LG8G1180 Aethionema arabicum HOM05D001488 ORTHO05D001456 1.1e-06 58.5 210 30.0
TAR452G0003 Trochodendron aralioides HOM05D004533 ORTHO05D005347 1.4e-06 58.2 70 47.1
PGSC0003DMG400002570 Solanum tuberosum HOM05D001488 ORTHO05D001456 9.2e-06 55.5 227 29.1


User provided reference genes

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