Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cpa.g.sc1.139 Carica papaya HOM05D004399 ORTHO05D005303 1.8e-130 469.2 226 100.0
Duzib251G0565 Durio zibethinus HOM05D004399 ORTHO05D005303 3.6e-118 428.3 226 87.6
Manes.05G109300 Manihot esculenta HOM05D004399 ORTHO05D005303 2.3e-117 425.6 225 88.0
COL.COLO4_27864 Corchorus olitorius HOM05D004399 ORTHO05D005303 3.0e-117 425.2 226 87.2
Thecc.02G328800 Theobroma cacao HOM05D004399 ORTHO05D005303 6.8e-117 424.1 226 88.1
Gohir.A03G104700 Gossypium hirsutum HOM05D004399 ORTHO05D005303 3.4e-116 421.8 226 86.7
TWI75G0511 Tripterygium wilfordii HOM05D004399 ORTHO05D005303 3.4e-116 421.8 225 88.0
MELO3C011412.2 Cucumis melo HOM05D004399 ORTHO05D005303 2.2e-115 419.1 221 87.3
CsaV3_6G033760 Cucumis sativus L. HOM05D004399 ORTHO05D005303 2.8e-115 418.7 221 87.3
Dinv34060 Davidia involucrata HOM05D004399 ORTHO05D005303 2.8e-115 418.7 221 87.8
MD13G1060600 Malus domestica HOM05D004399 ORTHO05D005303 2.8e-115 418.7 225 86.2
Prupe.1G288800 Prunus persica HOM05D004399 ORTHO05D005303 3.7e-115 418.3 225 86.2
TAR622G1336 Trochodendron aralioides HOM05D004399 ORTHO05D005303 1.1e-114 416.8 225 86.2
CSS0044473 Camellia sinensis var. sinensis HOM05D004399 ORTHO05D005303 1.8e-114 416.0 222 86.9
Potri.008G097100 Populus trichocarpa HOM05D004399 ORTHO05D005303 1.8e-114 416.0 223 87.9
CiPaw.05G124200 Carya illinoinensis HOM05D004399 ORTHO05D005303 3.2e-114 415.2 221 87.8
ClCG08G010510 Citrullus lanatus HOM05D004399 ORTHO05D005303 4.1e-114 414.8 221 87.3
Eucgr.B03145 Eucalyptus grandis HOM05D004399 ORTHO05D005303 4.1e-114 414.8 226 85.8
CANSAT11G0637 Cannabis sativa HOM05D004399 ORTHO05D005303 7.0e-114 414.1 221 88.2
Haze_11894 Corylus avellana HOM05D004399 ORTHO05D005303 1.6e-113 412.9 225 87.1
PGR083G0959 Punica granatum HOM05D004399 ORTHO05D005303 1.6e-113 412.9 221 86.0
Cfa008867 Carpinus fangiana HOM05D004399 ORTHO05D005303 2.0e-113 412.5 225 86.7
QL03p073920 Quercus lobata HOM05D004399 ORTHO05D005303 2.0e-113 412.5 221 86.9
RcHm_v2.0_Chr4g0438081 Rosa chinensis HOM05D004399 ORTHO05D005303 2.0e-113 412.5 225 84.4
Sc11g0002530 Simmondsia chinensis HOM05D004399 ORTHO05D005303 3.5e-113 411.8 221 85.5
FAN22G0874 Fragaria x ananassa HOM05D004399 ORTHO05D005303 4.6e-113 411.4 225 85.3
Psat3g063920 Pisum sativum HOM05D004399 ORTHO05D005303 5.9e-113 411.0 222 86.5
Nn3g17119 Nelumbo nucifera HOM05D004399 ORTHO05D005303 7.8e-113 410.6 222 86.0
Potri.010G157500 Populus trichocarpa HOM05D004399 ORTHO05D005303 7.8e-113 410.6 223 86.5
HanXRQChr12g0363151 Helianthus annuus HOM05D004399 ORTHO05D005303 1.0e-112 410.2 222 85.1
CANSAT64G2641 Cannabis sativa HOM05D004399 ORTHO05D005303 1.3e-112 409.8 221 87.3
Sabra08G0073300 Salix brachista HOM05D004399 ORTHO05D005303 1.3e-112 409.8 219 88.6
Ciclev10032681m.g Citrus clementina HOM05D004399 ORTHO05D005303 1.7e-112 409.5 223 85.2
FvH4_4g29830 Fragaria vesca HOM05D004399 ORTHO05D005303 1.7e-112 409.5 225 84.4
FAN17G2847 Fragaria x ananassa HOM05D004399 ORTHO05D005303 2.3e-112 409.1 225 84.4
Lj1g0019699 Lotus japonicus HOM05D004399 ORTHO05D005303 5.0e-112 407.9 222 86.0
Phvul.010G102900 Phaseolus vulgaris HOM05D004399 ORTHO05D005303 5.0e-112 407.9 221 86.9
arahy.Tifrunner.gnm1.ann1.MJW4NY Arachis hypogaea HOM05D004399 ORTHO05D005303 6.6e-112 407.5 223 86.5
vmacro10433 Vaccinium macrocarpon HOM05D004399 ORTHO05D005303 6.6e-112 407.5 222 85.6
Cc06_g15640 Coffea canephora HOM05D004399 ORTHO05D005303 8.6e-112 407.1 221 84.2
Lj6A777T47 Lonicera japonica HOM05D004399 ORTHO05D005303 8.6e-112 407.1 224 83.5
ECA233G2368 Erigeron canadensis HOM05D004399 ORTHO05D005303 1.1e-111 406.8 226 82.7
Lj3C1029T7 Lonicera japonica HOM05D004399 ORTHO05D005303 1.1e-111 406.8 221 84.2
Ah.02g126810 Amaranthus hybridus HOM05D004399 ORTHO05D005303 1.5e-111 406.4 224 83.0
Ah.03g138840 Amaranthus hybridus HOM05D004399 ORTHO05D005303 1.9e-111 406.0 222 84.7
FAN12G0059 Fragaria x ananassa HOM05D004399 ORTHO05D005303 1.9e-111 406.0 225 84.0
Hund05832 Selenicereus undatus HOM05D004399 ORTHO05D005303 1.9e-111 406.0 221 84.6
VMungo0331G0538 Vigna mungo HOM05D004399 ORTHO05D005303 2.5e-111 405.6 221 86.9
Nn4g24779 Nelumbo nucifera HOM05D004399 ORTHO05D005303 3.3e-111 405.2 225 83.6
EL10Ac6g15013 Beta vulgaris HOM05D004399 ORTHO05D005303 4.3e-111 404.8 221 84.2
Glyma.16G032800 Glycine max HOM05D004399 ORTHO05D005303 9.5e-111 403.7 221 87.3
PSO017G5651 Papaver somniferum HOM05D004399 ORTHO05D005303 9.5e-111 403.7 226 82.7
MBI14_g37191_MAGBIO Magnolia biondii HOM05D004399 ORTHO05D005303 1.2e-110 403.3 221 85.5
arahy.Tifrunner.gnm1.ann1.E76E6E Arachis hypogaea HOM05D004399 ORTHO05D005303 1.6e-110 402.9 223 86.1
Medtr4g094990 Medicago truncatula HOM05D004399 ORTHO05D005303 1.6e-110 402.9 222 83.8
Sp2g14510 Schrenkiella parvula HOM05D004399 ORTHO05D005303 1.6e-110 402.9 220 84.1
Ca_08608_v3 Cicer arietinum L. HOM05D004399 ORTHO05D005303 2.1e-110 402.5 222 85.1
Ca_25695_v3 Cicer arietinum L. HOM05D004399 ORTHO05D005303 2.8e-110 402.1 221 85.1
HanXRQChr08g0211681 Helianthus annuus HOM05D004399 ORTHO05D005303 2.8e-110 402.1 222 82.9
CAN.G707.11 Capsicum annuum HOM05D004399 ORTHO05D005303 3.6e-110 401.7 221 84.2
PSO832G2862 Papaver somniferum HOM05D004399 ORTHO05D005303 3.6e-110 401.7 222 83.8
PGSC0003DMG402028313 Solanum tuberosum HOM05D004399 ORTHO05D005303 3.6e-110 401.7 221 84.2
Hma1.2p1_0566F.1_g179870 Hydrangea macrophylla HOM05D004399 ORTHO05D005303 4.7e-110 401.4 221 84.6
Aqoxy3G03260 Aquilegia oxysepala HOM05D004399 ORTHO05D005303 6.1e-110 401.0 224 82.6
BcaC06g31162 Brassica carinata HOM05D004399 ORTHO05D005303 6.1e-110 401.0 220 83.2
C07p34040 Brassica napus HOM05D004399 ORTHO05D005303 6.1e-110 401.0 220 83.2
BolC7t43918H Brassica oleracea HOM05D004399 ORTHO05D005303 6.1e-110 401.0 220 83.2
Gorai.005G145900 Gossypium raimondii HOM05D004399 ORTHO05D005303 6.1e-110 401.0 218 85.8
MD16G1059800 Malus domestica HOM05D004399 ORTHO05D005303 6.1e-110 401.0 225 82.2
Lalb_Chr17g0341271 Lupinus albus HOM05D004399 ORTHO05D005303 8.0e-110 400.6 213 88.3
BcaC06g31172 Brassica carinata HOM05D004399 ORTHO05D005303 1.0e-109 400.2 220 83.6
Rhsim09G0126300 Rhododendron simsii HOM05D004399 ORTHO05D005303 1.0e-109 400.2 235 80.9
Peaxi162Scf00175g00428 Petunia axillaris HOM05D004399 ORTHO05D005303 1.4e-109 399.8 221 84.2
AL5G13480 Arabidopsis lyrata HOM05D004399 ORTHO05D005303 1.8e-109 399.4 221 82.4
A06p42990 Brassica napus HOM05D004399 ORTHO05D005303 1.8e-109 399.4 220 82.7
Carub.0005s0281 Capsella rubella HOM05D004399 ORTHO05D005303 1.8e-109 399.4 221 82.4
SGA_v2.0_scaffold16G07803 Striga asiatica HOM05D004399 ORTHO05D005303 1.8e-109 399.4 222 82.4
Solyc05g012150.4 Solanum lycopersicum HOM05D004399 ORTHO05D005303 2.3e-109 399.1 221 83.7
Sopen05g006940 Solanum pennellii HOM05D004399 ORTHO05D005303 2.3e-109 399.1 221 83.7
Aa31LG2G6990 Aethionema arabicum HOM05D004399 ORTHO05D005303 4.0e-109 398.3 220 81.8
Thhalv10004874m.g Eutrema salsugineum HOM05D004399 ORTHO05D005303 5.2e-109 397.9 220 82.3
THA.LOC104805201 Tarenaya hassleriana HOM05D004399 ORTHO05D005303 5.2e-109 397.9 225 81.8
AUR62003087 Chenopodium quinoa HOM05D004399 ORTHO05D005303 6.8e-109 397.5 221 81.9
Atru.chr11.1611 Acer truncatum HOM05D004399 ORTHO05D005303 8.9e-109 397.1 225 83.1
Gohir.D02G129900 Gossypium hirsutum HOM05D004399 ORTHO05D005303 8.9e-109 397.1 212 86.8
Medtr7g095060 Medicago truncatula HOM05D004399 ORTHO05D005303 8.9e-109 397.1 222 82.4
Lsat_1_v5_gn_8_46460 Lactuca sativa HOM05D004399 ORTHO05D005303 1.2e-108 396.7 222 82.9
Sed0000590 Sechium edule HOM05D004399 ORTHO05D005303 1.2e-108 396.7 222 82.0
DCAR_024127 Daucus carota HOM05D004399 ORTHO05D005303 2.0e-108 396.0 216 85.2
Glyma.07G066700 Glycine max HOM05D004399 ORTHO05D005303 2.0e-108 396.0 221 85.5
AT2G03690 Arabidopsis thaliana HOM05D004399 ORTHO05D005303 3.4e-108 395.2 221 81.4
BcaB07g30287 Brassica carinata HOM05D004399 ORTHO05D005303 4.4e-108 394.8 220 81.8
Migut.L01179 Erythranthe guttata HOM05D004399 ORTHO05D005303 4.4e-108 394.8 221 83.3
Medtr4g094998 Medicago truncatula HOM05D004399 ORTHO05D005303 9.8e-108 393.7 222 81.5
PSO478G0010 Papaver somniferum HOM05D004399 ORTHO05D005303 1.3e-107 393.3 226 81.9
AL5G13460 Arabidopsis lyrata HOM05D004399 ORTHO05D005303 1.7e-107 392.9 221 81.4
DCAR_026680 Daucus carota HOM05D004399 ORTHO05D005303 2.2e-107 392.5 226 82.7
Os04g0674200 Oryza sativa ssp. japonica HOM05D004399 ORTHO05D005303 2.9e-107 392.1 220 82.3
Nitab4.5_0007061g0010 Nicotiana tabacum HOM05D004399 ORTHO05D005303 3.7e-107 391.7 222 82.0
CARHR146010 Cardamine hirsuta HOM05D004399 ORTHO05D005303 6.4e-107 391.0 221 81.4
Aqoxy4G03091 Aquilegia oxysepala HOM05D004399 ORTHO05D005303 8.3e-107 390.6 215 84.2
AUR62007904 Chenopodium quinoa HOM05D004399 ORTHO05D005303 8.3e-107 390.6 221 80.1
Oeu031535.3 Olea europaea HOM05D004399 ORTHO05D005303 1.1e-106 390.2 248 75.0
BcaC03g17230 Brassica carinata HOM05D004399 ORTHO05D005303 1.9e-106 389.4 220 80.9
BolC2t11249H Brassica oleracea HOM05D004399 ORTHO05D005303 1.9e-106 389.4 220 80.9
Os05g0188800 Oryza sativa ssp. japonica HOM05D004399 ORTHO05D005303 1.9e-106 389.4 220 81.8
A02p33520 Brassica napus HOM05D004399 ORTHO05D005303 3.2e-106 388.7 220 80.5
Nitab4.5_0000231g0090 Nicotiana tabacum HOM05D004399 ORTHO05D005303 2.0e-105 386.0 242 76.0
Sed0002833 Sechium edule HOM05D004399 ORTHO05D005303 2.0e-105 386.0 222 80.6
Zm00001eb433530 Zea mays HOM05D004399 ORTHO05D005303 2.0e-105 386.0 222 80.6
MSTRG.7738 Avicennia marina HOM05D004399 ORTHO05D005303 2.7e-105 385.6 219 81.3
SalBow4G1206 Salvia bowleyana HOM05D004399 ORTHO05D005303 6.6e-104 380.9 221 79.6
TPR.G29232 Trifolium pratense HOM05D004399 ORTHO05D005303 1.9e-103 379.4 222 82.0
CDE02G0376 Ceratophyllum demersum HOM05D004399 ORTHO05D005303 4.3e-103 378.3 216 80.1
CDE04G3031 Ceratophyllum demersum HOM05D004399 ORTHO05D005303 5.2e-101 371.3 216 78.7
SalBow2G2941 Salvia bowleyana HOM05D004399 ORTHO05D005303 5.8e-100 367.9 276 65.9
C02p51640 Brassica napus HOM05D004399 ORTHO05D005303 4.1e-98 361.7 208 80.8
SEGI_29941 Sequoiadendron giganteum HOM05D004399 ORTHO05D005303 3.5e-97 358.6 218 72.5
AUR62019674 Chenopodium quinoa HOM05D004399 ORTHO05D005303 1.6e-94 349.7 228 72.8
AagrBONN_evm.TU.Sc2ySwM_368.1886 Anthoceros agrestis HOM05D004399 ORTHO05D005303 1.1e-90 337.0 219 69.4
Mapoly0124s0026 Marchantia polymorpha HOM05D004399 ORTHO05D005303 2.4e-90 335.9 219 69.4
Pp3c2_220 Physcomitrium patens HOM05D004399 ORTHO05D005303 5.1e-88 328.2 213 69.0
SMO196G0238 Selaginella moellendorffii HOM05D004399 ORTHO05D005303 4.4e-84 315.1 223 64.6
MD13G1061300 Malus domestica HOM05D004399 ORTHO05D005303 3.3e-79 298.9 164 87.2
GSVIVG01000552001 Vitis vinifera HOM05D004399 ORTHO05D005303 2.1e-78 296.2 161 87.0
Sed0017877 Sechium edule HOM05D004399 ORTHO05D005303 3.1e-77 292.4 169 78.1
CBR_g38753 Chara braunii HOM05D004399 ORTHO05D001303 1.7e-72 276.6 219 58.4
ATR1120G108 Amborella trichopoda HOM05D004399 ORTHO05D005303 3.9e-72 275.4 159 78.0
SalBow4G2688 Salvia bowleyana HOM05D004399 ORTHO05D005303 4.3e-71 271.9 152 80.3
TPR.G35678 Trifolium pratense HOM05D004399 ORTHO05D005303 4.6e-65 251.9 129 87.6
Cre03.g154850 Chlamydomonas reinhardtii HOM05D004399 ORTHO05D005303 1.4e-61 240.4 214 53.3
PRCOL_00001738 Prasinoderma coloniale HOM05D004399 ORTHO05D005303 3.1e-61 239.2 213 55.4
SalBow4G1336 Salvia bowleyana HOM05D004399 ORTHO05D005303 1.2e-60 237.3 158 70.9
HanXRQChr10g0298331 Helianthus annuus HOM05D004399 ORTHO05D005303 4.9e-59 231.9 129 81.4
vmacro20929 Vaccinium macrocarpon HOM05D004399 ORTHO05D005303 3.3e-55 219.2 148 76.4
MCO10G350 Micromonas commoda HOM05D004399 ORTHO05D005303 6.3e-54 214.9 209 48.3
Phvul.007G165400 Phaseolus vulgaris HOM05D004399 ORTHO05D005303 5.0e-51 205.3 112 83.0
unitig_8.g3180 Utricularia gibba HOM05D004399 ORTHO05D005303 1.4e-50 203.8 111 86.5
Glyma.02G119500 Glycine max HOM05D004399 ORTHO05D005303 3.2e-50 202.6 113 79.6
SMO187G0002 Selaginella moellendorffii HOM05D004399 ORTHO05D005303 1.2e-41 174.1 130 58.5
Carub.0005s2415 Capsella rubella HOM05D004399 ORTHO05D005303 2.3e-40 169.9 107 76.6
MBI14_g45258_MAGBIO Magnolia biondii HOM05D004399 ORTHO05D005303 4.8e-38 162.2 86 83.7
Cfa024149 Carpinus fangiana HOM05D004399 ORTHO05D005303 7.2e-34 148.3 218 36.7
HanXRQChr13g0414251 Helianthus annuus HOM05D004399 ORTHO05D005303 1.0e-32 144.4 97 75.3
BcaB07g30659 Brassica carinata HOM05D004399 ORTHO05D005303 3.1e-29 132.9 133 49.6
FAN04G2106 Fragaria x ananassa HOM05D004399 ORTHO05D005303 4.5e-28 129.0 75 81.3
Phvul.007G165450 Phaseolus vulgaris HOM05D004399 ORTHO05D005303 1.1e-26 124.4 78 80.8
SalBow4G1060 Salvia bowleyana HOM05D004399 ORTHO05D005303 2.7e-25 119.8 65 80.0
TPR.G30910 Trifolium pratense HOM05D004399 ORTHO05D005303 3.6e-25 119.4 60 88.3
Actinidia12918 Actinidia chinensis HOM05D004399 ORTHO05D005303 6.1e-25 118.6 108 55.6
SalBow4G1755 Salvia bowleyana HOM05D004399 ORTHO05D005303 6.3e-22 108.6 102 49.0
RcHm_v2.0_Chr7g0182561 Rosa chinensis HOM05D004399 ORTHO05D005303 7.0e-21 105.1 62 82.3
SalBow4G1426 Salvia bowleyana HOM05D000195 ORTHO05D000377 2.0e-20 103.6 61 85.2
ATR1120G192 Amborella trichopoda HOM05D004399 ORTHO05D005303 5.9e-20 102.1 61 82.0
TPR.G35682 Trifolium pratense HOM05D004399 ORTHO05D005303 5.9e-20 102.1 59 83.1
HanXRQChr01g0013031 Helianthus annuus HOM05D004399 ORTHO05D005303 2.9e-19 99.8 54 79.6
Nn4g23036 Nelumbo nucifera HOM05D004399 ORTHO05D005303 2.9e-19 99.8 64 76.6
HPP92_015023 Vanilla planifolia HOM05D000240 ORTHO05D001153 4.0e-16 89.4 100 49.0
FAN08G1770 Fragaria x ananassa HOM05D004399 ORTHO05D005303 1.5e-15 87.4 128 46.1
Glyma.07G066400 Glycine max HOM05D004399 ORTHO05D005303 2.6e-15 86.7 54 83.3
SEGI_28424 Sequoiadendron giganteum HOM05D004399 ORTHO05D005303 1.3e-11 74.3 50 70.0
A09p24540 Brassica napus HOM05D004399 ORTHO05D005303 1.6e-09 67.4 39 71.8
DCAR_028902 Daucus carota HOM05D004399 ORTHO05D175529 2.3e-08 63.5 43 79.1
SalBow4G0663 Salvia bowleyana HOM05D000195 ORTHO05D000377 4.4e-07 59.3 35 80.0


User provided reference genes

Program Settings