Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cpa.g.sc0.76 Carica papaya HOM05D004172 ORTHO05D006010 0.0e+00 1145.2 597 100.0
Thecc.04G148100 Theobroma cacao HOM05D004172 ORTHO05D006010 1.9e-275 952.2 597 83.4
Prupe.6G297500 Prunus persica HOM05D004172 ORTHO05D006010 1.8e-273 945.7 597 81.7
Duzib151G0210 Durio zibethinus HOM05D004172 ORTHO05D006010 4.4e-272 941.0 597 82.4
Manes.09G122000 Manihot esculenta HOM05D004172 ORTHO05D006010 9.7e-272 939.9 603 80.9
Manes.08G168300 Manihot esculenta HOM05D004172 ORTHO05D006010 6.3e-271 937.2 590 81.2
Glyma.18G217100 Glycine max HOM05D004172 ORTHO05D006010 7.7e-269 930.2 595 80.0
Gohir.A02G001800 Gossypium hirsutum HOM05D004172 ORTHO05D006010 1.3e-268 929.5 597 81.6
Phvul.008G079500 Phaseolus vulgaris HOM05D004172 ORTHO05D006010 3.8e-268 927.9 595 79.5
RcHm_v2.0_Chr3g0459921 Rosa chinensis HOM05D004172 ORTHO05D006010 1.5e-267 926.0 589 82.2
Gohir.D02G002100 Gossypium hirsutum HOM05D004172 ORTHO05D006010 7.2e-267 923.7 597 81.1
Potri.006G111200 Populus trichocarpa HOM05D004172 ORTHO05D006010 7.2e-267 923.7 596 80.7
Gorai.005G002600 Gossypium raimondii HOM05D004172 ORTHO05D006010 1.2e-266 922.9 597 81.1
QL07p031284 Quercus lobata HOM05D004172 ORTHO05D006010 6.1e-266 920.6 598 80.9
Glyma.09G271900 Glycine max HOM05D004172 ORTHO05D006010 1.4e-265 919.5 595 79.5
FvH4_6g09450 Fragaria vesca HOM05D004172 ORTHO05D006010 1.8e-265 919.1 597 80.1
Gorai.011G125600 Gossypium raimondii HOM05D004172 ORTHO05D006010 1.8e-265 919.1 597 80.7
Gohir.D10G113800 Gossypium hirsutum HOM05D004172 ORTHO05D006010 4.0e-265 917.9 597 80.4
MD04G1177600 Malus domestica HOM05D004172 ORTHO05D006010 5.2e-265 917.5 602 78.7
FAN02G3863 Fragaria x ananassa HOM05D004172 ORTHO05D006010 8.8e-265 916.8 597 79.7
FAN14G3054 Fragaria x ananassa HOM05D004172 ORTHO05D006010 1.5e-264 916.0 597 79.9
MD12G1192900 Malus domestica HOM05D004172 ORTHO05D006010 1.5e-264 916.0 597 78.7
CANSAT55G0003 Cannabis sativa HOM05D004172 ORTHO05D006010 3.3e-264 914.8 598 79.6
VMungo1383G2431 Vigna mungo HOM05D004172 ORTHO05D006010 3.3e-264 914.8 597 78.4
QL07p031617 Quercus lobata HOM05D004172 ORTHO05D006010 7.5e-264 913.7 598 80.4
FAN09G2297 Fragaria x ananassa HOM05D004172 ORTHO05D006010 2.2e-263 912.1 590 80.3
Gohir.A10G152400 Gossypium hirsutum HOM05D004172 ORTHO05D006010 3.7e-263 911.4 597 79.9
Lj1g0013582 Lotus japonicus HOM05D004172 ORTHO05D006010 3.7e-263 911.4 590 79.2
Eucgr.K01297 Eucalyptus grandis HOM05D004172 ORTHO05D006010 4.8e-263 911.0 590 80.0
Psat3g117200 Pisum sativum HOM05D004172 ORTHO05D006010 1.1e-262 909.8 598 77.1
Sed0001307 Sechium edule HOM05D004172 ORTHO05D006010 9.1e-262 906.7 590 81.0
arahy.Tifrunner.gnm1.ann1.5JF3JJ Arachis hypogaea HOM05D004172 ORTHO05D006010 1.6e-261 906.0 597 79.2
Medtr7g074060 Medicago truncatula HOM05D004172 ORTHO05D006010 4.5e-261 904.4 590 78.5
Cfa017003 Carpinus fangiana HOM05D004172 ORTHO05D006010 7.7e-261 903.7 600 79.2
arahy.Tifrunner.gnm1.ann1.VH0VRX Arachis hypogaea HOM05D004172 ORTHO05D006010 1.3e-260 902.9 597 78.7
arahy.Tifrunner.gnm1.ann1.3N9KBA Arachis hypogaea HOM05D004172 ORTHO05D006010 2.2e-260 902.1 597 79.1
TWI53G0780 Tripterygium wilfordii HOM05D004172 ORTHO05D006010 1.5e-259 899.4 590 80.2
arahy.Tifrunner.gnm1.ann1.SQ7DBT Arachis hypogaea HOM05D004172 ORTHO05D006010 1.9e-259 899.0 597 78.7
Ciclev10011331m.g Citrus clementina HOM05D004172 ORTHO05D006010 2.5e-259 898.7 597 78.9
Sabra04G0157100 Salix brachista HOM05D004172 ORTHO05D006010 5.5e-259 897.5 637 75.2
CsaV3_4G027360 Cucumis sativus L. HOM05D004172 ORTHO05D006010 9.4e-259 896.7 594 80.5
Lalb_Chr07g0195761 Lupinus albus HOM05D004172 ORTHO05D006010 1.2e-258 896.3 592 78.7
ClCG04G006210 Citrullus lanatus HOM05D004172 ORTHO05D006010 1.6e-258 896.0 590 80.7
THA.LOC104806653 Tarenaya hassleriana HOM05D004172 ORTHO05D006010 2.7e-258 895.2 590 78.8
TPR.G24292 Trifolium pratense HOM05D004172 ORTHO05D006010 6.1e-258 894.0 598 77.1
Ca_07790_v3 Cicer arietinum L. HOM05D004172 ORTHO05D006010 8.0e-258 893.6 599 77.1
PGR004G2490 Punica granatum HOM05D004172 ORTHO05D006010 1.4e-257 892.9 594 77.6
Atru.chr8.66 Acer truncatum HOM05D004172 ORTHO05D006010 5.2e-257 891.0 591 80.2
MELO3C025255.2 Cucumis melo HOM05D004172 ORTHO05D006010 6.8e-257 890.6 594 80.1
Lalb_Chr01g0023931 Lupinus albus HOM05D004172 ORTHO05D006010 8.8e-257 890.2 598 76.6
Sabra06G0086400 Salix brachista HOM05D004172 ORTHO05D006010 2.2e-255 885.6 702 68.5
CiPaw.10G166300 Carya illinoinensis HOM05D004172 ORTHO05D006010 4.8e-255 884.4 565 81.4
Dinv16944 Davidia involucrata HOM05D004172 ORTHO05D006010 4.1e-254 881.3 598 77.8
CSS0013897 Camellia sinensis var. sinensis HOM05D004172 ORTHO05D006010 2.9e-252 875.2 597 76.5
Dinv21399 Davidia involucrata HOM05D004172 ORTHO05D006010 1.1e-251 873.2 597 77.1
Phvul.010G059200 Phaseolus vulgaris HOM05D004172 ORTHO05D006010 4.0e-249 864.8 585 77.3
VMungo0331G1250 Vigna mungo HOM05D004172 ORTHO05D006010 3.4e-248 861.7 585 77.3
Carub.0003s0778 Capsella rubella HOM05D004172 ORTHO05D006010 5.7e-248 860.9 592 74.8
AT3G08650 Arabidopsis thaliana HOM05D004172 ORTHO05D006010 1.3e-247 859.8 592 74.8
CARHR082950 Cardamine hirsuta HOM05D004172 ORTHO05D006010 1.3e-247 859.8 591 74.8
Hma1.2p1_0106F.1_g051180 Hydrangea macrophylla HOM05D004172 ORTHO05D006010 6.3e-247 857.4 596 75.3
Rhsim04G0120600 Rhododendron simsii HOM05D004172 ORTHO05D006010 6.3e-247 857.4 597 76.0
Haze_21203 Corylus avellana HOM05D004172 ORTHO05D006010 1.1e-246 856.7 699 67.5
THA.LOC104823330 Tarenaya hassleriana HOM05D004172 ORTHO05D006010 1.1e-246 856.7 592 74.7
AL3G19650 Arabidopsis lyrata HOM05D004172 ORTHO05D006010 4.1e-246 854.7 592 74.5
Sp3g07090 Schrenkiella parvula HOM05D004172 ORTHO05D006010 2.7e-245 852.0 592 74.7
BolC3t16675H Brassica oleracea HOM05D004172 ORTHO05D006010 3.5e-245 851.7 592 74.2
BraA03t12811Z Brassica rapa HOM05D004172 ORTHO05D006010 3.5e-245 851.7 592 74.3
A03p36430 Brassica napus HOM05D004172 ORTHO05D006010 5.9e-245 850.9 593 74.7
Thhalv10020349m.g Eutrema salsugineum HOM05D004172 ORTHO05D006010 1.0e-244 850.1 591 74.5
Aa31LG5G18700 Aethionema arabicum HOM05D004172 ORTHO05D006010 1.7e-244 849.4 591 74.5
BcaC09g47981 Brassica carinata HOM05D004172 ORTHO05D006010 3.3e-243 845.1 600 72.7
BolC1t05497H Brassica oleracea HOM05D004172 ORTHO05D006010 1.2e-242 843.2 599 72.6
Peaxi162Scf00019g00011 Petunia axillaris HOM05D004172 ORTHO05D006010 6.1e-242 840.9 598 73.7
BcaB04g21247 Brassica carinata HOM05D004172 ORTHO05D006010 1.0e-241 840.1 592 73.1
MSTRG.5032 Avicennia marina HOM05D004172 ORTHO05D006010 2.3e-241 839.0 597 73.4
Nn5g26794 Nelumbo nucifera HOM05D004172 ORTHO05D006010 2.3e-241 839.0 565 77.5
GSVIVG01029868001 Vitis vinifera HOM05D004172 ORTHO05D006010 2.3e-241 839.0 508 84.1
Lj7P587T8 Lonicera japonica HOM05D004172 ORTHO05D006010 5.2e-241 837.8 599 74.3
A05p40120 Brassica napus HOM05D004172 ORTHO05D006010 8.9e-241 837.0 576 74.5
BolC5t34577H Brassica oleracea HOM05D004172 ORTHO05D006010 8.9e-241 837.0 595 73.1
Aqoxy4G03306 Aquilegia oxysepala HOM05D004172 ORTHO05D006010 2.0e-240 835.9 592 74.8
BNapus_Darmor_BZH_scaffold_167p00070 Brassica napus HOM05D004172 ORTHO05D006010 2.6e-240 835.5 598 72.2
SalBow6G2214 Salvia bowleyana HOM05D004172 ORTHO05D006010 5.7e-240 834.3 597 73.5
Nitab4.5_0006228g0020 Nicotiana tabacum HOM05D004172 ORTHO05D006010 1.7e-239 832.8 581 74.4
C05p59200 Brassica napus HOM05D004172 ORTHO05D006010 2.2e-239 832.4 593 72.8
MBI15_g31039_MAGBIO Magnolia biondii HOM05D004172 ORTHO05D006010 2.9e-239 832.0 598 73.9
Sc20g0007210 Simmondsia chinensis HOM05D004172 ORTHO05D006010 3.7e-239 831.6 597 72.7
TAR633G1329 Trochodendron aralioides HOM05D004172 ORTHO05D006010 3.7e-239 831.6 572 76.9
Nitab4.5_0000707g0290 Nicotiana tabacum HOM05D004172 ORTHO05D006010 6.4e-239 830.9 585 74.0
BcaC01g04188 Brassica carinata HOM05D004172 ORTHO05D006010 2.7e-237 825.5 592 72.8
Solyc01g087530.3 Solanum lycopersicum HOM05D004172 ORTHO05D006010 3.5e-237 825.1 599 73.0
PGSC0003DMG400006857 Solanum tuberosum HOM05D004172 ORTHO05D006010 4.6e-237 824.7 597 72.7
Sopen01g034500 Solanum pennellii HOM05D004172 ORTHO05D006010 7.8e-237 823.9 597 72.5
CAN.G219.48 Capsicum annuum HOM05D004172 ORTHO05D006010 6.6e-236 820.8 597 72.2
BcaC05g29600 Brassica carinata HOM05D004172 ORTHO05D006010 1.1e-235 820.1 576 73.6
Oeu006559.1 Olea europaea HOM05D004172 ORTHO05D006010 2.5e-235 818.9 618 71.2
AUR62029801 Chenopodium quinoa HOM05D004172 ORTHO05D006010 7.3e-235 817.4 590 72.0
DCAR_029461 Daucus carota HOM05D004172 ORTHO05D006010 1.2e-234 816.6 599 73.1
ECA248G2273 Erigeron canadensis HOM05D004172 ORTHO05D006010 6.2e-234 814.3 597 71.5
Actinidia20804 Actinidia chinensis HOM05D004172 ORTHO05D006010 1.0e-233 813.5 597 73.5
AUR62006448 Chenopodium quinoa HOM05D004172 ORTHO05D006010 1.2e-232 810.1 597 70.7
EL10Ac7g17137 Beta vulgaris HOM05D004172 ORTHO05D006010 9.8e-232 807.0 590 70.5
Ah.15g089820 Amaranthus hybridus HOM05D004172 ORTHO05D006010 3.7e-231 805.1 597 69.7
Hund03687 Selenicereus undatus HOM05D004172 ORTHO05D006010 6.4e-231 804.3 592 70.6
Migut.N01780 Erythranthe guttata HOM05D004172 ORTHO05D006010 7.8e-229 797.3 597 72.4
PSO017G1041 Papaver somniferum HOM05D004172 ORTHO05D006010 2.3e-228 795.8 574 73.9
TAR636G0443 Trochodendron aralioides HOM05D004172 ORTHO05D006010 1.1e-227 793.5 596 72.1
Cc02_g28240 Coffea canephora HOM05D004172 ORTHO05D006010 1.5e-227 793.1 511 79.3
PSO170G1455 Papaver somniferum HOM05D004172 ORTHO05D006010 2.5e-227 792.3 574 73.3
PSO502G0022 Papaver somniferum HOM05D004172 ORTHO05D006010 6.8e-225 784.3 574 72.8
Oeu049006.1 Olea europaea HOM05D004172 ORTHO05D006010 2.4e-222 775.8 598 69.9
SHI12946 Sapria himalayana HOM05D004172 ORTHO05D006010 3.2e-214 748.8 601 67.9
Potri.016G140500 Populus trichocarpa HOM05D004172 ORTHO05D006010 2.3e-212 742.7 601 68.1
Os05g0316100 Oryza sativa ssp. japonica HOM05D004172 ORTHO05D006010 2.5e-211 739.2 595 65.0
ATR1127G216 Amborella trichopoda HOM05D004172 ORTHO05D006010 3.3e-211 738.8 571 69.2
CDE09G1233 Ceratophyllum demersum HOM05D004172 ORTHO05D006010 3.1e-209 732.3 575 66.6
HPP92_026424 Vanilla planifolia HOM05D004172 ORTHO05D006010 1.9e-206 723.0 598 64.9
Lsat_1_v5_gn_1_105840 Lactuca sativa HOM05D004172 ORTHO05D006010 1.5e-200 703.4 600 64.7
Zm00001eb408330 Zea mays HOM05D004172 ORTHO05D006010 2.9e-199 699.1 595 63.0
unitig_747.g21293 Utricularia gibba HOM05D004172 ORTHO05D006010 2.6e-184 649.4 514 68.3
HanXRQChr01g0016071 Helianthus annuus HOM05D004172 ORTHO05D006010 3.0e-180 636.0 433 76.2
SEGI_23896 Sequoiadendron giganteum HOM05D004172 ORTHO05D006010 5.7e-179 631.7 478 69.0
CDE08G0114 Ceratophyllum demersum HOM05D004172 ORTHO05D006010 9.7e-179 630.9 449 73.3
vmacro08954 Vaccinium macrocarpon HOM05D004172 ORTHO05D006010 4.8e-170 602.1 507 65.7
SMO337G0001 Selaginella moellendorffii HOM05D004172 ORTHO05D006010 2.3e-164 583.2 527 60.9
C03p44040 Brassica napus HOM05D004172 ORTHO05D006010 1.0e-159 567.8 379 78.1
BraA01t04334Z Brassica rapa HOM05D004172 ORTHO05D006010 1.6e-152 543.9 372 73.7
CiPaw.09G223100 Carya illinoinensis HOM05D004172 ORTHO05D006010 1.6e-152 543.9 580 58.4
Pp3c6_18720 Physcomitrium patens HOM05D004172 ORTHO05D006010 1.4e-137 494.2 519 51.4
SGA_v2.0_scaffold5G02963 Striga asiatica HOM05D004172 ORTHO05D006010 2.8e-130 469.9 323 77.1
Actinidia32576 Actinidia chinensis HOM05D004172 ORTHO05D006010 2.4e-129 466.8 400 64.2
COL.COLO4_05675 Corchorus olitorius HOM05D004172 ORTHO05D006010 1.0e-119 434.9 252 89.3
CSS0016172 Camellia sinensis var. sinensis HOM05D004172 ORTHO05D006010 7.5e-115 418.7 358 64.8
Mapoly0092s0078 Marchantia polymorpha HOM05D004172 ORTHO05D006010 2.6e-107 393.7 502 46.4
CBR_g164 Chara braunii HOM05D004172 ORTHO05D006010 2.1e-96 357.5 555 40.9
BcaB04g18578 Brassica carinata HOM05D004172 ORTHO05D006010 1.0e-95 355.1 229 78.2
Actinidia28546 Actinidia chinensis HOM05D004172 ORTHO05D006010 2.4e-84 317.4 228 72.8
SEGI_22351 Sequoiadendron giganteum HOM05D004172 ORTHO05D006010 3.3e-78 297.0 245 65.7
C03p44050 Brassica napus HOM05D004172 ORTHO05D006010 1.9e-73 281.2 210 67.1
MCO09G526 Micromonas commoda HOM05D004172 ORTHO05D006010 1.2e-64 251.9 257 51.8
Cre06.g281900 Chlamydomonas reinhardtii HOM05D004172 ORTHO05D006010 1.8e-60 238.0 319 41.7
PRCOL_00003523 Prasinoderma coloniale HOM05D004172 ORTHO05D006010 1.4e-47 195.3 266 44.0
Medtr3g094870 Medicago truncatula HOM05D004172 ORTHO05D006010 8.8e-47 192.6 114 85.1
CSS0001306 Camellia sinensis var. sinensis HOM05D004172 ORTHO05D000002 2.9e-42 177.6 127 71.7
HanXRQChr04g0127351 Helianthus annuus HOM05D004172 ORTHO05D006010 1.4e-31 142.1 132 60.6
RcHm_v2.0_Chr3g0459981 Rosa chinensis HOM05D004172 ORTHO05D018193 8.5e-26 122.9 103 60.2
QL07p004777 Quercus lobata HOM05D004172 ORTHO05D039478 6.1e-24 116.7 185 42.7
RcHm_v2.0_Chr3g0460031 Rosa chinensis HOM05D004172 ORTHO05D018193 6.1e-24 116.7 101 60.4
SEGI_04146 Sequoiadendron giganteum HOM05D004172 ORTHO05D006010 1.4e-23 115.5 205 41.0
Actinidia32575 Actinidia chinensis HOM05D004172 ORTHO05D006010 9.5e-17 92.8 50 86.0
C02p50100 Brassica napus HOM05D004172 ORTHO05D018193 3.6e-16 90.9 52 86.5
BolC2t11086H Brassica oleracea HOM05D004172 ORTHO05D018193 3.6e-16 90.9 52 86.5
HanXRQChr11g0335241 Helianthus annuus HOM05D004172 ORTHO05D006010 1.3e-13 82.4 47 89.4
SEGI_20309 Sequoiadendron giganteum HOM05D004172 ORTHO05D006010 6.3e-13 80.1 65 67.7
BcaC02g10326 Brassica carinata HOM05D004172 ORTHO05D023965 1.8e-12 78.6 81 53.1
TAR633G1452 Trochodendron aralioides HOM05D004172 ORTHO05D414170 4.3e-09 67.4 57 54.4
C03p65240 Brassica napus HOM05D004172 ORTHO05D018193 4.7e-08 63.9 30 93.3
BolC3t18777H Brassica oleracea HOM05D004172 ORTHO05D018193 4.7e-08 63.9 30 93.3
BolC4t24562H Brassica oleracea HOM05D004172 ORTHO05D023965 1.4e-07 62.4 72 48.6
Actinidia28545 Actinidia chinensis HOM05D004172 ORTHO05D018193 1.8e-07 62.0 105 40.0
C04p30290 Brassica napus HOM05D004172 ORTHO05D023965 1.8e-07 62.0 71 49.3
C01p21620 Brassica napus HOM05D004172 ORTHO05D023965 1.5e-06 58.9 72 47.2
BcaC05g28200 Brassica carinata HOM05D004381 ORTHO05D005200 4.4e-06 57.4 248 28.2
BcaC07g38378 Brassica carinata HOM05D004172 ORTHO05D039478 7.5e-06 56.6 57 43.9
COL.COLO4_16027 Corchorus olitorius HOM05D004172 ORTHO05D159660 7.5e-06 56.6 54 63.0


User provided reference genes

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