Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cpa.g.sc0.21 Carica papaya HOM05D000411 ORTHO05D034083 2.8e-51 204.9 98 100.0
Cpa.g.sc735.1 Carica papaya HOM05D000411 ORTHO05D034083 1.6e-14 82.8 80 58.8
Cpa.g.sc40.23 Carica papaya HOM05D000411 ORTHO05D000310 1.2e-09 66.6 100 47.0
Migut.J01130 Erythranthe guttata HOM05D000411 ORTHO05D000310 1.2e-09 66.6 100 47.0
Thecc.09G105000 Theobroma cacao HOM05D000411 ORTHO05D000310 1.2e-09 66.6 100 47.0
Duzib187G0576 Durio zibethinus HOM05D000411 ORTHO05D000310 1.6e-09 66.2 100 46.0
Actinidia07402 Actinidia chinensis HOM05D000411 ORTHO05D000310 2.7e-09 65.5 100 46.0
MELO3C004573.2 Cucumis melo HOM05D000411 ORTHO05D000310 2.7e-09 65.5 100 45.0
CsaV3_2G002090 Cucumis sativus L. HOM05D000411 ORTHO05D000310 2.7e-09 65.5 100 45.0
MSTRG.19567 Avicennia marina HOM05D000411 ORTHO05D000310 3.5e-09 65.1 100 46.0
Oeu002251.1 Olea europaea HOM05D000411 ORTHO05D000310 3.5e-09 65.1 100 46.0
Oeu064595.2 Olea europaea HOM05D000411 ORTHO05D000310 3.5e-09 65.1 100 46.0
SalBow6G1246 Salvia bowleyana HOM05D000411 ORTHO05D000310 3.5e-09 65.1 100 46.0
Sed0026944 Sechium edule HOM05D000411 ORTHO05D000310 3.5e-09 65.1 100 44.0
Ca_17317_v3 Cicer arietinum L. HOM05D000411 ORTHO05D000310 4.5e-09 64.7 100 46.0
Duzib150G1404 Durio zibethinus HOM05D000411 ORTHO05D000310 4.5e-09 64.7 100 46.0
HanXRQChr16g0508371 Helianthus annuus HOM05D000411 ORTHO05D000310 4.5e-09 64.7 100 45.0
Hma1.2p1_0945F.1_g240140 Hydrangea macrophylla HOM05D000411 ORTHO05D000310 4.5e-09 64.7 100 43.0
Lsat_1_v5_gn_8_96360 Lactuca sativa HOM05D000411 ORTHO05D000310 4.5e-09 64.7 100 44.0
Lj4g0015227 Lotus japonicus HOM05D000411 ORTHO05D000310 4.5e-09 64.7 100 46.0
Cc06_g10110 Coffea canephora HOM05D000411 ORTHO05D000310 5.9e-09 64.3 100 45.0
ECA236G3245 Erigeron canadensis HOM05D000411 ORTHO05D000310 5.9e-09 64.3 100 44.0
FvH4_1g05680 Fragaria vesca HOM05D000411 ORTHO05D000310 5.9e-09 64.3 100 45.0
FAN19G0704 Fragaria x ananassa HOM05D000411 ORTHO05D000310 5.9e-09 64.3 100 45.0
FAN26G0162 Fragaria x ananassa HOM05D000411 ORTHO05D000310 5.9e-09 64.3 100 45.0
FAN26G2212 Fragaria x ananassa HOM05D000411 ORTHO05D000310 5.9e-09 64.3 100 45.0
RcHm_v2.0_Chr2g0091351 Rosa chinensis HOM05D000411 ORTHO05D000310 5.9e-09 64.3 100 45.0
TWI32G0900 Tripterygium wilfordii HOM05D000411 ORTHO05D000310 5.9e-09 64.3 100 44.0
vmacro06237 Vaccinium macrocarpon HOM05D000411 ORTHO05D000310 5.9e-09 64.3 100 44.0
Atru.chr7.1417 Acer truncatum HOM05D000411 ORTHO05D000310 7.7e-09 63.9 100 45.0
Dinv14249 Davidia involucrata HOM05D000411 ORTHO05D000310 7.7e-09 63.9 100 44.0
Eucgr.C01282 Eucalyptus grandis HOM05D000411 ORTHO05D000310 7.7e-09 63.9 100 45.0
FAN28G1077 Fragaria x ananassa HOM05D000411 ORTHO05D000310 7.7e-09 63.9 100 45.0
Glyma.05G228700 Glycine max HOM05D000411 ORTHO05D000310 7.7e-09 63.9 100 45.0
Glyma.08G035700 Glycine max HOM05D000411 ORTHO05D000310 7.7e-09 63.9 100 45.0
Nn2g11649 Nelumbo nucifera HOM05D000411 ORTHO05D000310 7.7e-09 63.9 100 44.0
GSVIVG01015342001 Vitis vinifera HOM05D000411 ORTHO05D000310 7.7e-09 63.9 100 44.0
Manes.16G112200 Manihot esculenta HOM05D000411 ORTHO05D000310 1.0e-08 63.5 100 45.0
Potri.018G084500 Populus trichocarpa HOM05D000411 ORTHO05D000310 1.0e-08 63.5 100 43.0
Sabra18G0072800 Salix brachista HOM05D000411 ORTHO05D000310 1.0e-08 63.5 100 43.0
Sed0004201 Sechium edule HOM05D000411 ORTHO05D000310 1.0e-08 63.5 99 44.4
CSS0017651 Camellia sinensis var. sinensis HOM05D000411 ORTHO05D000310 1.3e-08 63.2 100 43.0
CSS0024987 Camellia sinensis var. sinensis HOM05D000411 ORTHO05D000310 1.3e-08 63.2 100 43.0
CANSAT56G3710 Cannabis sativa HOM05D000411 ORTHO05D000310 1.3e-08 63.2 100 44.0
COL.COLO4_34801 Corchorus olitorius HOM05D000411 ORTHO05D000310 1.3e-08 63.2 100 43.0
HPP92_023900 Vanilla planifolia HOM05D000411 ORTHO05D000310 1.3e-08 63.2 101 42.6
Manes.03G024600 Manihot esculenta HOM05D000411 ORTHO05D000310 1.7e-08 62.8 99 45.5
Prupe.7G224800 Prunus persica HOM05D000411 ORTHO05D000310 1.7e-08 62.8 101 46.5
FAN23G1601 Fragaria x ananassa HOM05D000411 ORTHO05D000310 2.2e-08 62.4 100 44.0
Gohir.A07G004500 Gossypium hirsutum HOM05D000411 ORTHO05D000310 2.2e-08 62.4 100 44.0
Lalb_Chr05g0223081 Lupinus albus HOM05D000411 ORTHO05D000310 2.2e-08 62.4 100 44.0
Aa31LG8G17010 Aethionema arabicum HOM05D000411 ORTHO05D000310 2.9e-08 62.0 100 43.0
AT4G28860 Arabidopsis thaliana HOM05D000411 ORTHO05D000310 2.9e-08 62.0 100 43.0
CiPaw.04G161100 Carya illinoinensis HOM05D000411 ORTHO05D000310 2.9e-08 62.0 100 45.0
Rhsim03G0239100 Rhododendron simsii HOM05D000411 ORTHO05D000310 2.9e-08 62.0 100 43.0
Ah.09g230850 Amaranthus hybridus HOM05D000411 ORTHO05D000310 3.8e-08 61.6 100 43.0
AL7G23610 Arabidopsis lyrata HOM05D000411 ORTHO05D000310 3.8e-08 61.6 100 42.0
AT4G28880 Arabidopsis thaliana HOM05D000411 ORTHO05D000310 3.8e-08 61.6 100 42.0
EL10Ac8g18424 Beta vulgaris HOM05D000411 ORTHO05D000310 3.8e-08 61.6 100 43.0
Carub.0007s1177 Capsella rubella HOM05D000411 ORTHO05D000310 3.8e-08 61.6 100 42.0
CARHR236660 Cardamine hirsuta HOM05D000411 ORTHO05D000310 3.8e-08 61.6 100 42.0
Gohir.A06G065100 Gossypium hirsutum HOM05D000411 ORTHO05D000310 3.8e-08 61.6 100 43.0
Gohir.D06G063700 Gossypium hirsutum HOM05D000411 ORTHO05D000310 3.8e-08 61.6 100 43.0
Gorai.010G074400 Gossypium raimondii HOM05D000411 ORTHO05D000310 3.8e-08 61.6 100 43.0
MD15G1192500 Malus domestica HOM05D000411 ORTHO05D000310 3.8e-08 61.6 100 43.0
Sp7g26860 Schrenkiella parvula HOM05D000411 ORTHO05D000310 3.8e-08 61.6 100 42.0
Hund09230 Selenicereus undatus HOM05D000411 ORTHO05D000310 3.8e-08 61.6 100 43.0
THA.LOC104804015 Tarenaya hassleriana HOM05D000411 ORTHO05D000310 3.8e-08 61.6 100 42.0
Aqoxy7G01520 Aquilegia oxysepala HOM05D000411 ORTHO05D000310 5.0e-08 61.2 100 44.0
Carub.0007s1178 Capsella rubella HOM05D000411 ORTHO05D000310 5.0e-08 61.2 100 41.0
Haze_25789 Corylus avellana HOM05D000411 ORTHO05D000310 5.0e-08 61.2 100 44.0
Dinv30277 Davidia involucrata HOM05D000411 ORTHO05D000310 5.0e-08 61.2 100 43.0
Lj7A658T89 Lonicera japonica HOM05D000411 ORTHO05D000310 5.0e-08 61.2 108 41.7
Lalb_Chr14g0371721 Lupinus albus HOM05D000411 ORTHO05D000310 5.0e-08 61.2 100 41.0
QL12p029153 Quercus lobata HOM05D000411 ORTHO05D000310 5.0e-08 61.2 100 44.0
VMungo0251G1511 Vigna mungo HOM05D000411 ORTHO05D000310 5.0e-08 61.2 100 45.0
VMungo0464G1736 Vigna mungo HOM05D000411 ORTHO05D000310 5.0e-08 61.2 100 43.0
Glyma.09G193600 Glycine max HOM05D000411 ORTHO05D000310 6.5e-08 60.8 100 43.0
Phvul.002G311000 Phaseolus vulgaris HOM05D000411 ORTHO05D000310 6.5e-08 60.8 100 45.0
BcaC09g51668 Brassica carinata HOM05D000411 ORTHO05D000310 8.5e-08 60.5 100 41.0
BraA01t00853Z Brassica rapa HOM05D000411 ORTHO05D000310 8.5e-08 60.5 100 41.0
AUR62010936 Chenopodium quinoa HOM05D000411 ORTHO05D000310 8.5e-08 60.5 100 44.0
Gorai.001G007400 Gossypium raimondii HOM05D000411 ORTHO05D000310 8.5e-08 60.5 100 43.0
MD02G1058000 Malus domestica HOM05D000411 ORTHO05D000310 8.5e-08 60.5 101 43.6
Medtr8g102930 Medicago truncatula HOM05D000411 ORTHO05D000310 8.5e-08 60.5 100 44.0
QL02p043181 Quercus lobata HOM05D000411 ORTHO05D000310 8.5e-08 60.5 100 43.0
BcaC06g32600 Brassica carinata HOM05D000411 ORTHO05D000310 1.1e-07 60.1 100 41.0
A03p58460 Brassica napus HOM05D000411 ORTHO05D000310 1.1e-07 60.1 100 41.0
BolC7t46127H Brassica oleracea HOM05D000411 ORTHO05D000310 1.1e-07 60.1 100 41.0
AUR62021448 Chenopodium quinoa HOM05D000411 ORTHO05D000310 1.1e-07 60.1 100 43.0
Dinv41643 Davidia involucrata HOM05D000411 ORTHO05D000310 1.1e-07 60.1 99 42.4
Thhalv10025299m.g Eutrema salsugineum HOM05D000411 ORTHO05D000310 1.1e-07 60.1 100 41.0
Nitab4.5_0001004g0090 Nicotiana tabacum HOM05D000411 ORTHO05D000310 1.1e-07 60.1 99 43.4
Psat7g014520 Pisum sativum HOM05D000411 ORTHO05D000310 1.1e-07 60.1 100 43.0
Ciclev10008372m.g Citrus clementina HOM05D000411 ORTHO05D000310 1.5e-07 59.7 100 40.0
Thhalv10025233m.g Eutrema salsugineum HOM05D000411 ORTHO05D000310 1.5e-07 59.7 100 41.0
Phvul.004G168800 Phaseolus vulgaris HOM05D000411 ORTHO05D000310 1.5e-07 59.7 100 42.0
SGA_v2.0_scaffold62G21551 Striga asiatica HOM05D000411 ORTHO05D000310 1.5e-07 59.7 100 43.0
Eucgr.C03799 Eucalyptus grandis HOM05D000411 ORTHO05D000310 1.9e-07 59.3 100 40.0
Peaxi162Scf00665g00146 Petunia axillaris HOM05D000411 ORTHO05D000310 1.9e-07 59.3 99 43.4
C01p10600 Brassica napus HOM05D000411 ORTHO05D000310 2.5e-07 58.9 100 40.0
BolC1t01022H Brassica oleracea HOM05D000411 ORTHO05D000310 2.5e-07 58.9 100 40.0
Lalb_Chr22g0352631 Lupinus albus HOM05D000411 ORTHO05D000310 2.5e-07 58.9 100 40.0
Nn3g18138 Nelumbo nucifera HOM05D000411 ORTHO05D000310 2.5e-07 58.9 100 42.0
Sp7g26855 Schrenkiella parvula HOM05D000411 ORTHO05D000310 2.5e-07 58.9 100 41.0
Solyc12g007280.3 Solanum lycopersicum HOM05D000411 ORTHO05D000310 2.5e-07 58.9 99 42.4
Sopen12g003240 Solanum pennellii HOM05D000411 ORTHO05D000310 2.5e-07 58.9 99 42.4
PGSC0003DMG400000372 Solanum tuberosum HOM05D000411 ORTHO05D000310 2.5e-07 58.9 99 42.4
Nitab4.5_0005564g0020 Nicotiana tabacum HOM05D000411 ORTHO05D000310 3.2e-07 58.5 99 42.4
TPR.G23445 Trifolium pratense HOM05D000411 ORTHO05D000310 3.2e-07 58.5 100 42.0
Actinidia14671 Actinidia chinensis HOM05D000411 ORTHO05D000310 4.2e-07 58.2 100 44.0
arahy.Tifrunner.gnm1.ann1.A9179A Arachis hypogaea HOM05D000411 ORTHO05D000310 4.2e-07 58.2 100 41.0
arahy.Tifrunner.gnm1.ann1.X6KMFA Arachis hypogaea HOM05D000411 ORTHO05D000310 4.2e-07 58.2 100 41.0
arahy.Tifrunner.gnm1.ann1.XGFC55 Arachis hypogaea HOM05D000411 ORTHO05D000310 4.2e-07 58.2 100 41.0
arahy.Tifrunner.gnm1.ann1.XJH4AJ Arachis hypogaea HOM05D000411 ORTHO05D000310 4.2e-07 58.2 100 41.0
CiPaw.07G205200 Carya illinoinensis HOM05D000411 ORTHO05D000310 4.2e-07 58.2 100 44.0
Lj1g0008802 Lotus japonicus HOM05D000411 ORTHO05D000310 4.2e-07 58.2 100 41.0
TAR624G1375 Trochodendron aralioides HOM05D000411 ORTHO05D000310 5.5e-07 57.8 100 42.0
CARHR236650 Cardamine hirsuta HOM05D000411 ORTHO05D000310 7.2e-07 57.4 100 39.0
DCAR_012054 Daucus carota HOM05D000411 ORTHO05D000310 7.2e-07 57.4 100 41.0
Ca_25552_v3 Cicer arietinum L. HOM05D000411 ORTHO05D000310 9.4e-07 57.0 95 42.1
TAR636G1184 Trochodendron aralioides HOM05D000411 ORTHO05D000310 9.4e-07 57.0 100 42.0
CSS0000628 Camellia sinensis var. sinensis HOM05D000411 ORTHO05D000310 1.2e-06 56.6 100 42.0
CSS0026882 Camellia sinensis var. sinensis HOM05D000411 ORTHO05D000310 1.2e-06 56.6 100 42.0
ECA246G3422 Erigeron canadensis HOM05D000411 ORTHO05D000310 1.2e-06 56.6 100 42.0
HanXRQChr16g0510971 Helianthus annuus HOM05D000411 ORTHO05D000310 1.2e-06 56.6 100 42.0
Lalb_Chr08g0243141 Lupinus albus HOM05D000411 ORTHO05D000310 2.1e-06 55.8 100 39.0
PSO782G1262 Papaver somniferum HOM05D000411 ORTHO05D000310 2.1e-06 55.8 100 42.0
Haze_21879 Corylus avellana HOM05D000411 ORTHO05D000310 2.7e-06 55.5 110 40.0
Medtr6g087070 Medicago truncatula HOM05D000411 ORTHO05D000310 2.7e-06 55.5 100 40.0
TPR.G28832 Trifolium pratense HOM05D000411 ORTHO05D000310 2.7e-06 55.5 100 40.0
TAR383G0781 Trochodendron aralioides HOM05D000411 ORTHO05D000310 2.7e-06 55.5 99 42.4
Psat1g045240 Pisum sativum HOM05D000411 ORTHO05D000310 3.6e-06 55.1 100 40.0
CDE08G1363 Ceratophyllum demersum HOM05D000411 ORTHO05D000310 6.1e-06 54.3 100 42.0
Thhalv10009041m.g Eutrema salsugineum HOM05D000411 ORTHO05D000310 6.1e-06 54.3 59 49.2
Thhalv10015711m.g Eutrema salsugineum HOM05D000411 ORTHO05D034083 6.1e-06 54.3 59 49.2
Lalb_Chr11g0064451 Lupinus albus HOM05D000411 ORTHO05D000310 6.1e-06 54.3 100 39.0
Hund26240 Selenicereus undatus HOM05D000411 ORTHO05D000310 6.1e-06 54.3 100 39.0
Thecc.09G043100 Theobroma cacao HOM05D000411 ORTHO05D000310 6.1e-06 54.3 100 42.0
Duzib168G0081 Durio zibethinus HOM05D000411 ORTHO05D000310 8.0e-06 53.9 100 41.0
Duzib187G1362 Durio zibethinus HOM05D000411 ORTHO05D000310 8.0e-06 53.9 100 41.0
Glyma.06G084300 Glycine max HOM05D000411 ORTHO05D000310 8.0e-06 53.9 100 37.0
Os02g0280400 Oryza sativa ssp. japonica HOM05D000411 ORTHO05D000310 8.0e-06 53.9 100 38.0


User provided reference genes

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