Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cpa.g.sc0.196 Carica papaya HOM05D002824 ORTHO05D007162 5.4e-66 254.2 132 100.0
Gohir.1Z050134 Gossypium hirsutum HOM05D002824 ORTHO05D007162 5.8e-60 234.2 130 92.3
PGR111G0083 Punica granatum HOM05D002824 ORTHO05D007162 7.6e-60 233.8 130 94.6
CAN.G1595.2 Capsicum annuum HOM05D002824 ORTHO05D007162 1.7e-59 232.6 130 93.1
Solyc00g500031.1 Solanum lycopersicum HOM05D002824 ORTHO05D007162 1.7e-59 232.6 130 93.1
Solyc00g500076.1 Solanum lycopersicum HOM05D002824 ORTHO05D007162 1.7e-59 232.6 130 93.1
Gohir.A12G024800 Gossypium hirsutum HOM05D002824 ORTHO05D007162 1.1e-58 229.9 130 90.8
CAN.G327.20 Capsicum annuum HOM05D002824 ORTHO05D007162 7.1e-58 227.3 130 91.5
Nn021s41522 Nelumbo nucifera HOM05D002824 ORTHO05D007162 6.0e-57 224.2 130 90.8
RcHm_v2.0_CPg0501871 Rosa chinensis HOM05D002824 ORTHO05D007162 7.9e-57 223.8 130 90.0
ATCG00770 Arabidopsis thaliana HOM05D002824 ORTHO05D007162 1.0e-56 223.4 130 88.5
BNapus_Darmor_BZH_scaffold_253p00350 Brassica napus HOM05D002824 ORTHO05D007162 1.0e-56 223.4 130 88.5
BraSC58t46441Z Brassica rapa HOM05D002824 ORTHO05D007162 1.3e-56 223.0 130 87.7
CARHR282250 Cardamine hirsuta HOM05D002824 ORTHO05D007162 1.3e-56 223.0 130 87.7
Gohir.A06G056900 Gossypium hirsutum HOM05D002824 ORTHO05D007162 1.3e-56 223.0 130 88.5
PSO548G0051 Papaver somniferum HOM05D002824 ORTHO05D007162 1.3e-56 223.0 130 92.3
Migut.D01328 Erythranthe guttata HOM05D002824 ORTHO05D007162 2.3e-56 222.2 130 89.2
TAR375G0295 Trochodendron aralioides HOM05D002824 ORTHO05D007162 2.3e-56 222.2 130 90.0
BolSC29t60529H Brassica oleracea HOM05D002824 ORTHO05D007162 3.0e-56 221.9 130 87.7
BolSC29t60610H Brassica oleracea HOM05D002824 ORTHO05D007162 3.0e-56 221.9 130 87.7
BolSC35t60729H Brassica oleracea HOM05D002824 ORTHO05D007162 3.0e-56 221.9 130 87.7
BraSC103t45445Z Brassica rapa HOM05D002824 ORTHO05D007162 3.0e-56 221.9 130 87.7
BraSC138t45553Z Brassica rapa HOM05D002824 ORTHO05D007162 3.0e-56 221.9 130 87.7
AL2G20560 Arabidopsis lyrata HOM05D002824 ORTHO05D007162 3.9e-56 221.5 130 87.7
AL2G21720 Arabidopsis lyrata HOM05D002824 ORTHO05D007162 3.9e-56 221.5 130 87.7
Peaxi162Scf00299g00114 Petunia axillaris HOM05D002824 ORTHO05D007162 5.1e-56 221.1 125 92.8
BNapus_Darmor_BZH_scaffold_287p00270 Brassica napus HOM05D002824 ORTHO05D007162 1.5e-55 219.5 130 86.9
HanXRQChr00c0394g0574541 Helianthus annuus HOM05D002824 ORTHO05D007162 5.6e-55 217.6 130 86.9
HanXRQChr01g0020211 Helianthus annuus HOM05D002824 ORTHO05D007162 5.6e-55 217.6 130 86.9
HanXRQChr10g0284391 Helianthus annuus HOM05D002824 ORTHO05D007162 5.6e-55 217.6 130 86.9
HanXRQChr10g0318051 Helianthus annuus HOM05D002824 ORTHO05D007162 5.6e-55 217.6 130 86.9
HanXRQChr11g0326971 Helianthus annuus HOM05D002824 ORTHO05D007162 5.6e-55 217.6 130 86.9
HanXRQChr12g0369861 Helianthus annuus HOM05D002824 ORTHO05D007162 5.6e-55 217.6 130 86.9
HanXRQCPg0580191 Helianthus annuus HOM05D002824 ORTHO05D007162 5.6e-55 217.6 130 86.9
C02p60170 Brassica napus HOM05D002824 ORTHO05D007162 9.6e-55 216.9 130 86.2
DCAR_032521 Daucus carota HOM05D002824 ORTHO05D007162 3.7e-54 214.9 130 86.9
ClCG00G003160 Citrullus lanatus HOM05D002824 ORTHO05D007162 1.4e-53 213.0 126 88.9
BraA06t25384Z Brassica rapa HOM05D002824 ORTHO05D007162 3.1e-53 211.8 121 89.3
Gohir.D01G102138 Gossypium hirsutum HOM05D002824 ORTHO05D007162 9.0e-53 210.3 117 92.3
Hund04057 Selenicereus undatus HOM05D002824 ORTHO05D007162 2.2e-51 205.7 129 86.0
Hund08802 Selenicereus undatus HOM05D002824 ORTHO05D007162 2.2e-51 205.7 129 86.0
Hund12527 Selenicereus undatus HOM05D002824 ORTHO05D007162 2.2e-51 205.7 129 86.0
Hund19320 Selenicereus undatus HOM05D002824 ORTHO05D007162 2.2e-51 205.7 129 86.0
Hund27962 Selenicereus undatus HOM05D002824 ORTHO05D007162 2.2e-51 205.7 129 86.0
Hund27985 Selenicereus undatus HOM05D002824 ORTHO05D007162 2.2e-51 205.7 129 86.0
Hund28109 Selenicereus undatus HOM05D002824 ORTHO05D007162 2.2e-51 205.7 129 86.0
Hund28268 Selenicereus undatus HOM05D002824 ORTHO05D007162 2.2e-51 205.7 129 86.0
Hund28459 Selenicereus undatus HOM05D002824 ORTHO05D007162 2.2e-51 205.7 129 86.0
Hund28519 Selenicereus undatus HOM05D002824 ORTHO05D007162 2.2e-51 205.7 129 86.0
Hund28529 Selenicereus undatus HOM05D002824 ORTHO05D007162 2.2e-51 205.7 129 86.0
Hund28632 Selenicereus undatus HOM05D002824 ORTHO05D007162 2.2e-51 205.7 129 86.0
Hund28678 Selenicereus undatus HOM05D002824 ORTHO05D007162 2.2e-51 205.7 129 86.0
Hund28746 Selenicereus undatus HOM05D002824 ORTHO05D007162 2.2e-51 205.7 129 86.0
Hund28759 Selenicereus undatus HOM05D002824 ORTHO05D007162 2.2e-51 205.7 129 86.0
Hund28778 Selenicereus undatus HOM05D002824 ORTHO05D007162 2.2e-51 205.7 129 86.0
Hund28846 Selenicereus undatus HOM05D002824 ORTHO05D007162 2.2e-51 205.7 129 86.0
Hund29022 Selenicereus undatus HOM05D002824 ORTHO05D007162 2.2e-51 205.7 129 86.0
Hund29036 Selenicereus undatus HOM05D002824 ORTHO05D007162 2.2e-51 205.7 129 86.0
Hund29164 Selenicereus undatus HOM05D002824 ORTHO05D007162 2.2e-51 205.7 129 86.0
Hund29217 Selenicereus undatus HOM05D002824 ORTHO05D007162 2.2e-51 205.7 129 86.0
Hund29505 Selenicereus undatus HOM05D002824 ORTHO05D007162 2.2e-51 205.7 129 86.0
Hund29525 Selenicereus undatus HOM05D002824 ORTHO05D007162 2.2e-51 205.7 129 86.0
Hund29537 Selenicereus undatus HOM05D002824 ORTHO05D007162 2.2e-51 205.7 129 86.0
Hund29554 Selenicereus undatus HOM05D002824 ORTHO05D007162 2.2e-51 205.7 129 86.0
Hund29593 Selenicereus undatus HOM05D002824 ORTHO05D007162 2.2e-51 205.7 129 86.0
Hund29605 Selenicereus undatus HOM05D002824 ORTHO05D007162 2.2e-51 205.7 129 86.0
Hund29612 Selenicereus undatus HOM05D002824 ORTHO05D007162 2.2e-51 205.7 129 86.0
Hund29682 Selenicereus undatus HOM05D002824 ORTHO05D007162 2.2e-51 205.7 129 86.0
Hund30031 Selenicereus undatus HOM05D002824 ORTHO05D007162 2.2e-51 205.7 129 86.0
Hund30272 Selenicereus undatus HOM05D002824 ORTHO05D007162 2.2e-51 205.7 129 86.0
Hund30490 Selenicereus undatus HOM05D002824 ORTHO05D007162 2.2e-51 205.7 129 86.0
Hund30495 Selenicereus undatus HOM05D002824 ORTHO05D007162 2.2e-51 205.7 129 86.0
Hund30544 Selenicereus undatus HOM05D002824 ORTHO05D007162 2.2e-51 205.7 129 86.0
Hund31501 Selenicereus undatus HOM05D002824 ORTHO05D007162 2.2e-51 205.7 129 86.0
BolC9t57548H Brassica oleracea HOM05D002824 ORTHO05D007162 8.4e-51 203.8 117 88.9
HanXRQChr17g0554561 Helianthus annuus HOM05D002824 ORTHO05D007162 8.4e-51 203.8 130 82.3
Lalb_Chr25g0283371 Lupinus albus HOM05D002824 ORTHO05D007162 8.4e-51 203.8 130 82.3
Hund27578 Selenicereus undatus HOM05D002824 ORTHO05D007162 4.2e-50 201.4 127 85.8
Lalb_Chr03g0039321 Lupinus albus HOM05D002824 ORTHO05D007162 7.1e-50 200.7 130 81.5
Gohir.D11G307000 Gossypium hirsutum HOM05D002824 ORTHO05D007162 2.7e-49 198.7 113 89.4
LjContig00319g0012184 Lotus japonicus HOM05D000964 ORTHO05D004047 4.6e-49 198.0 125 84.8
LjContig00319g0026138 Lotus japonicus HOM05D000964 ORTHO05D004047 4.6e-49 198.0 125 84.8
Gohir.A05G396400 Gossypium hirsutum HOM05D002824 ORTHO05D007162 3.0e-48 195.3 110 90.0
Gorai.003G111500 Gossypium raimondii HOM05D002824 ORTHO05D007162 1.5e-47 193.0 118 84.7
Medtr4g034810 Medicago truncatula HOM05D002824 ORTHO05D007162 1.5e-47 193.0 118 84.7
Gohir.D03G105400 Gossypium hirsutum HOM05D002824 ORTHO05D007162 3.3e-47 191.8 118 83.9
HanXRQChr00c0925g0577901 Helianthus annuus HOM05D002824 ORTHO05D007162 7.4e-47 190.7 113 86.7
Lalb_Chr23g0274241 Lupinus albus HOM05D002824 ORTHO05D007162 2.1e-46 189.1 130 76.2
Hund29957 Selenicereus undatus HOM05D002824 ORTHO05D007162 2.4e-45 185.7 128 79.7
Lsat_1_v5_gn_1_116300 Lactuca sativa HOM05D002824 ORTHO05D007162 1.2e-44 183.3 130 77.7
LjContig00318g0002732 Lotus japonicus HOM05D002824 ORTHO05D007162 5.8e-44 181.0 130 76.9
Medtr4g059910 Medicago truncatula HOM05D002824 ORTHO05D007162 6.5e-43 177.6 101 88.1
HanXRQChr11g0345281 Helianthus annuus HOM05D002824 ORTHO05D007162 1.9e-42 176.0 113 81.4
Eucgr.E03558 Eucalyptus grandis HOM05D002824 ORTHO05D007162 4.6e-41 171.4 95 91.6
Gohir.A12G228400 Gossypium hirsutum HOM05D002824 ORTHO05D007162 1.6e-38 162.9 88 93.2
BolC7t41708H Brassica oleracea HOM05D002824 ORTHO05D007162 4.8e-38 161.4 94 88.3
Gorai.005G065900 Gossypium raimondii HOM05D002824 ORTHO05D007162 1.8e-37 159.5 97 84.5
SEGI_33981 Sequoiadendron giganteum HOM05D002824 ORTHO05D007162 4.1e-37 158.3 130 64.6
GSVIVG01014320001 Vitis vinifera HOM05D002824 ORTHO05D007162 4.5e-36 154.8 93 88.2
Thhalv10027382m.g Eutrema salsugineum HOM05D002824 ORTHO05D007162 6.5e-35 151.0 87 88.5
Nitab4.5_0000173g0110 Nicotiana tabacum HOM05D002824 ORTHO05D007162 1.2e-33 146.7 85 89.4
Nitab4.5_0011882g0040 Nicotiana tabacum HOM05D002824 ORTHO05D007162 2.1e-33 146.0 82 90.2
C09p46990 Brassica napus HOM05D002824 ORTHO05D007162 2.7e-33 145.6 82 90.2
Phvul.001G158000 Phaseolus vulgaris HOM05D002824 ORTHO05D007162 8.7e-32 140.6 99 71.7
Gohir.D08G062280 Gossypium hirsutum HOM05D002824 ORTHO05D007162 1.5e-28 129.8 130 60.0
arahy.Tifrunner.gnm1.ann1.BAD1H7 Arachis hypogaea HOM05D002824 ORTHO05D007162 5.9e-28 127.9 90 77.8
Gohir.D08G194656 Gossypium hirsutum HOM05D002824 ORTHO05D007162 2.2e-27 125.9 130 59.2
Gorai.013G136400 Gossypium raimondii HOM05D002824 ORTHO05D007162 1.9e-26 122.9 70 88.6
MBI05_g05353_MAGBIO Magnolia biondii HOM05D002824 ORTHO05D007162 4.2e-26 121.7 77 83.1
Nitab4.5_0020737g0030 Nicotiana tabacum HOM05D002824 ORTHO05D007162 5.5e-26 121.3 80 80.0
Gohir.D13G121750 Gossypium hirsutum HOM05D002824 ORTHO05D007162 5.1e-24 114.8 70 85.7
Lalb_Chr20g0114531 Lupinus albus HOM05D002824 ORTHO05D007162 7.4e-23 110.9 70 82.9
SMO086G0055 Selaginella moellendorffii HOM05D002824 ORTHO05D007162 1.3e-22 110.2 129 48.1
BolSC56t61248H Brassica oleracea HOM05D002824 ORTHO05D007162 2.4e-21 105.9 58 91.4
BraSC59t46570Z Brassica rapa HOM05D002824 ORTHO05D007162 2.4e-21 105.9 58 91.4
Gohir.A08G063166 Gossypium hirsutum HOM05D002824 ORTHO05D007162 2.6e-20 102.4 58 87.9
MELO3C027652.2 Cucumis melo HOM05D002824 ORTHO05D007162 5.9e-20 101.3 60 88.3
EL10As15g24111 Beta vulgaris HOM05D002824 ORTHO05D007162 1.0e-19 100.5 88 61.4
Hund30069 Selenicereus undatus HOM05D002824 ORTHO05D008771 8.5e-19 97.4 63 82.5
BolSC35t60670H Brassica oleracea HOM05D002824 ORTHO05D007162 1.9e-18 96.3 58 84.5
BolSC49t61163H Brassica oleracea HOM05D002824 ORTHO05D007162 1.9e-18 96.3 53 92.5
Nitab4.5_0000173g0100 Nicotiana tabacum HOM05D000964 ORTHO05D001488 2.5e-18 95.9 55 89.1
HanXRQChr00c0593g0576371 Helianthus annuus HOM05D002824 ORTHO05D007162 2.1e-17 92.8 58 82.8
HanXRQChr04g0127481 Helianthus annuus HOM05D002824 ORTHO05D007162 2.1e-17 92.8 58 82.8
HanXRQChr11g0321101 Helianthus annuus HOM05D002824 ORTHO05D007162 2.1e-17 92.8 58 82.8
MELO3C026355.2 Cucumis melo HOM05D002824 ORTHO05D007162 2.7e-17 92.4 58 82.8
Medtr3g035490 Medicago truncatula HOM05D001133 ORTHO05D000941 8.0e-17 90.9 81 63.0
BraSC103t45484Z Brassica rapa HOM05D002824 ORTHO05D007162 2.3e-16 89.4 59 79.7
BraSC58t46502Z Brassica rapa HOM05D002824 ORTHO05D007162 3.9e-16 88.6 58 79.3
FAN18G2960 Fragaria x ananassa HOM05D015635 ORTHO05D007162 2.6e-15 85.9 56 78.6
MELO3C033570.2 Cucumis melo HOM05D002824 ORTHO05D007162 1.4e-13 80.1 60 76.7
SEGI_01834 Sequoiadendron giganteum HOM05D000964 ORTHO05D003870 9.1e-13 77.4 56 67.9
SEGI_02369 Sequoiadendron giganteum HOM05D000964 ORTHO05D004047 9.1e-13 77.4 56 67.9
SEGI_04931 Sequoiadendron giganteum HOM05D000964 ORTHO05D004047 9.1e-13 77.4 56 67.9
SEGI_09600 Sequoiadendron giganteum HOM05D000964 ORTHO05D003870 9.1e-13 77.4 56 67.9
SEGI_17120 Sequoiadendron giganteum HOM05D000964 ORTHO05D004047 9.1e-13 77.4 56 67.9
SEGI_22757 Sequoiadendron giganteum HOM05D000964 ORTHO05D004047 9.1e-13 77.4 56 67.9
SEGI_27642 Sequoiadendron giganteum HOM05D000964 ORTHO05D003870 9.1e-13 77.4 56 67.9
SGA_v2.0_scaffold208G41997 Striga asiatica HOM05D002824 ORTHO05D007162 9.1e-13 77.4 50 82.0
Hund08020 Selenicereus undatus HOM05D002824 ORTHO05D007162 1.6e-12 76.6 78 56.4
SEGI_30352 Sequoiadendron giganteum HOM05D000964 ORTHO05D003870 2.6e-12 75.9 56 66.1
BraSC143t45637Z Brassica rapa HOM05D002824 ORTHO05D007162 1.5e-10 70.1 39 89.7
arahy.Tifrunner.gnm1.ann1.TW2HF4 Arachis hypogaea HOM05D000216 ORTHO05D000634 7.2e-10 67.8 51 72.5
arahy.Tifrunner.gnm1.ann1.CYZ3KW Arachis hypogaea HOM05D001828 ORTHO05D001745 1.2e-09 67.0 42 81.0
ClCG10G008280 Citrullus lanatus HOM05D002824 ORTHO05D007162 6.7e-08 61.2 36 86.1
Hund15214 Selenicereus undatus HOM05D002824 ORTHO05D007162 3.7e-06 55.5 47 61.7


User provided reference genes

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